Wall clock time and date at job start Tue Mar 31 2020 20:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47054 * 125.41113 * 2 1 4 4 C 1.54104 * 103.86189 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.55057 * 118.59254 * 4 3 2 6 6 C 1.50698 * 110.67033 * 241.34662 * 4 3 2 7 7 O 1.21283 * 120.00548 * 97.91349 * 6 4 3 8 8 N 1.34787 * 119.99671 * 277.91437 * 6 4 3 9 9 C 1.47073 * 120.88194 * 359.72263 * 8 6 4 10 10 C 1.53697 * 108.27748 * 128.75430 * 9 8 6 11 11 N 1.46901 * 109.25298 * 54.08195 * 10 9 8 12 12 C 1.46905 * 110.99394 * 172.60925 * 11 10 9 13 13 C 1.53940 * 113.74723 * 40.97724 * 12 11 10 14 14 N 1.47585 * 86.11822 * 222.04688 * 13 12 11 15 15 C 1.36936 * 134.49185 * 204.63733 * 14 13 12 16 16 H 1.07998 * 120.00059 * 179.97438 * 15 14 13 17 17 C 1.38807 * 119.99820 * 0.02562 * 15 14 13 18 18 N 1.31618 * 120.00593 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00031 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47387 * 59.99440 * 19 17 15 21 21 H 1.48500 * 109.47280 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47015 * 299.99890 * 19 17 15 23 23 C 1.47579 * 91.01314 * 24.63729 * 14 13 12 24 24 C 1.46896 * 111.27023 * 296.75393 * 11 10 9 25 25 C 1.47081 * 120.87829 * 179.97438 * 8 6 4 26 26 N 1.47057 * 103.86175 * 359.97438 * 4 3 2 27 27 C 1.33944 * 109.17993 * 0.02562 * 26 4 3 28 28 O 1.21585 * 123.04143 * 180.02562 * 27 26 4 29 29 H 1.08999 * 109.47295 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47311 * 300.03037 * 1 2 3 31 31 H 1.09008 * 109.46918 * 60.02317 * 1 2 3 32 32 H 1.08995 * 110.55082 * 61.40481 * 3 2 1 33 33 H 1.09007 * 110.54786 * 298.59420 * 3 2 1 34 34 H 1.09000 * 109.63064 * 248.52429 * 9 8 6 35 35 H 1.09004 * 109.62755 * 9.10209 * 9 8 6 36 36 H 1.08998 * 109.64696 * 294.07549 * 10 9 8 37 37 H 1.08996 * 109.44498 * 173.95820 * 10 9 8 38 38 H 1.09000 * 112.94014 * 172.71324 * 12 11 10 39 39 H 1.09001 * 113.76641 * 336.34708 * 13 12 11 40 40 H 1.08999 * 113.77262 * 107.74211 * 13 12 11 41 41 H 0.96999 * 120.00730 * 179.97438 * 18 17 15 42 42 H 1.08999 * 113.77085 * 221.06072 * 23 14 13 43 43 H 1.09006 * 113.87003 * 89.67670 * 23 14 13 44 44 H 1.09001 * 109.49093 * 303.14883 * 24 11 10 45 45 H 1.09003 * 109.51543 * 183.08089 * 24 11 10 46 46 H 1.09002 * 109.62917 * 350.89758 * 25 8 6 47 47 H 1.09006 * 109.62426 * 111.28365 * 25 8 6 48 48 H 0.96999 * 125.40959 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2854 0.9465 -0.8970 6 6 4.4940 1.0656 1.2365 7 8 4.5749 0.3183 2.1883 8 7 5.0691 2.2837 1.2852 9 6 4.9881 3.2031 0.1402 10 6 4.4828 4.5627 0.6485 11 7 5.3415 5.0176 1.7501 12 6 5.0027 6.3901 2.1493 13 6 3.4893 6.6695 2.1855 14 7 3.8144 7.9622 1.5520 15 6 3.2043 9.1871 1.5028 16 1 3.6621 9.9968 0.9539 17 6 1.9980 9.3885 2.1594 18 7 1.4403 8.4020 2.8288 19 14 1.1661 11.0597 2.0931 20 1 0.8685 11.4088 0.6807 21 1 -0.0996 11.0138 2.8684 22 1 2.0678 12.0851 2.6768 23 6 5.0610 7.4044 0.9927 24 6 5.2672 4.1023 2.8966 25 6 5.7989 2.7264 2.4830 26 7 3.5537 -0.8249 -0.0003 27 6 2.2411 -1.0917 -0.0002 28 8 1.7945 -2.2226 0.0006 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5135 -0.8903 32 1 2.1407 1.7934 0.8961 33 1 2.1406 1.7934 -0.8962 34 1 5.9756 3.3197 -0.3064 35 1 4.2931 2.8060 -0.5998 36 1 3.4573 4.4629 1.0040 37 1 4.5172 5.2892 -0.1634 38 1 5.5322 6.7151 3.0449 39 1 2.9044 6.0039 1.5507 40 1 3.0838 6.7635 3.1929 41 1 0.5975 8.5428 3.2880 42 1 5.9104 8.0852 1.0477 43 1 4.9397 6.9544 0.0072 44 1 4.2307 4.0090 3.2209 45 1 5.8705 4.4945 3.7154 46 1 5.6402 2.0141 3.2926 47 1 6.8634 2.7947 2.2586 48 1 4.2620 -1.4876 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941515635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:11 Heat of formation + Delta-G solvation = 47.348117 kcal Electronic energy + Delta-G solvation = -30465.332697 eV Core-core repulsion = 26365.913404 eV Total energy + Delta-G solvation = -4099.419293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70608 -40.12398 -38.91950 -36.80951 -36.41451 -34.37593 -33.94954 -32.05053 -31.33917 -29.75583 -28.22684 -27.43698 -26.28253 -24.96275 -24.25726 -23.75423 -22.67282 -21.44199 -20.80801 -19.61057 -18.59554 -18.09813 -17.68273 -16.93015 -16.58784 -16.39255 -15.60239 -15.51660 -15.34346 -15.07391 -14.91102 -14.58886 -14.36589 -14.32580 -13.99508 -13.80685 -13.74479 -13.38201 -12.77217 -12.61197 -12.46653 -12.37382 -12.25420 -12.16336 -11.94043 -11.70823 -11.28590 -11.09213 -10.94379 -10.78724 -10.66173 -10.54063 -10.38841 -10.25617 -9.98261 -9.58543 -9.48308 -8.94946 -8.89492 -8.83379 -7.94679 -6.94360 -5.84592 -3.17656 2.07937 2.35101 2.55637 2.97750 3.33772 3.38216 3.39479 3.53888 3.89613 3.97784 4.02727 4.39789 4.41992 4.65002 4.76857 4.88353 4.96753 5.02522 5.10484 5.13846 5.20501 5.26590 5.27570 5.37706 5.42147 5.49183 5.54810 5.59303 5.62374 5.73548 5.87257 5.98708 6.03709 6.20573 6.25005 6.35851 6.45004 6.53747 6.78368 6.87529 7.09570 7.11801 7.17500 7.26492 7.42940 7.51783 7.82296 7.90105 8.32951 8.96277 9.62910 10.50563 11.31803 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.002864 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.217129 B = 9774.110018 C =11096.591702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.635 5.635 3 C 0.105 3.895 4 C 0.104 3.896 5 H 0.117 0.883 6 C 0.505 3.495 7 O -0.526 6.526 8 N -0.605 5.605 9 C 0.108 3.892 10 C 0.034 3.966 11 N -0.529 5.529 12 C 0.035 3.965 13 C 0.133 3.867 14 N -0.608 5.608 15 C -0.224 4.224 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.125 3.875 24 C 0.042 3.958 25 C 0.118 3.882 26 N -0.716 5.716 27 C 0.705 3.295 28 O -0.584 6.584 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.029 0.971 40 H 0.069 0.931 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -13.624 -7.206 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.375 5.375 3 C -0.019 4.019 4 C -0.006 4.006 5 H 0.135 0.865 6 C 0.290 3.710 7 O -0.402 6.402 8 N -0.339 5.339 9 C -0.015 4.015 10 C -0.095 4.095 11 N -0.253 5.253 12 C -0.074 4.074 13 C 0.006 3.994 14 N -0.335 5.335 15 C -0.352 4.352 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.210 1.210 23 C -0.001 4.001 24 C -0.087 4.087 25 C -0.004 4.004 26 N -0.377 5.377 27 C 0.406 3.594 28 O -0.462 6.462 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.094 0.906 48 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 6.348 -14.365 -6.772 17.103 hybrid contribution -1.014 1.009 0.214 1.446 sum 5.334 -13.356 -6.558 15.806 Atomic orbital electron populations 1.21467 0.75118 1.04067 1.01770 1.46997 1.06583 1.05456 1.78427 1.22299 0.85955 0.89130 1.04516 1.21870 0.97343 0.83365 0.98053 0.86538 1.20692 0.79471 0.81718 0.89161 1.90742 1.59718 1.52605 1.37121 1.48218 1.53500 1.14956 1.17261 1.22145 1.02506 0.89383 0.87505 1.22687 0.95555 0.95208 0.96004 1.62023 1.53016 1.02612 1.07649 1.24313 0.98235 0.85586 0.99254 1.22883 0.91491 0.86185 0.98812 1.45746 1.22062 1.06895 1.58762 1.18955 1.02342 0.86141 1.27722 0.90221 1.24779 0.97524 0.97832 1.00180 1.69802 1.19357 1.30587 1.37113 0.86206 0.78814 0.83245 0.77523 1.21151 1.21552 1.21024 1.22679 0.90415 0.92542 0.94486 1.22389 1.00497 0.91897 0.93868 1.21775 0.95878 0.95380 0.87384 1.44833 1.07002 1.06070 1.79806 1.15796 0.81646 0.84669 0.77303 1.90958 1.75788 1.20901 1.58548 0.89467 0.91795 0.91758 0.89367 0.88450 0.89978 0.89891 0.93249 0.88659 0.88157 0.95390 0.91296 0.93604 0.93635 0.94545 0.94065 0.89504 0.88967 0.90569 0.72444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.01 11.21 59.85 0.67 1.68 16 2 N -0.64 -6.81 3.36 -186.73 -0.63 -7.44 16 3 C 0.11 0.87 6.73 -3.16 -0.02 0.85 16 4 C 0.10 0.88 3.14 -68.20 -0.21 0.66 16 5 H 0.12 0.60 6.95 -51.93 -0.36 0.24 16 6 C 0.50 5.57 6.83 -10.98 -0.08 5.49 16 7 O -0.53 -7.94 16.03 5.56 0.09 -7.85 16 8 N -0.61 -5.98 3.00 -172.20 -0.52 -6.50 16 9 C 0.11 0.87 6.40 -3.37 -0.02 0.84 16 10 C 0.03 0.39 4.59 -3.46 -0.02 0.38 16 11 N -0.53 -6.89 4.76 -227.97 -1.09 -7.98 16 12 C 0.03 0.58 4.05 -69.92 -0.28 0.30 16 13 C 0.13 2.87 6.81 -2.98 -0.02 2.85 16 14 N -0.61 -14.62 3.70 -178.08 -0.66 -15.28 16 15 C -0.22 -6.02 10.70 -15.06 -0.16 -6.19 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -26.39 11.38 55.49 0.63 -25.76 16 19 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.13 2.32 8.41 -2.98 -0.03 2.30 16 24 C 0.04 0.51 5.58 -3.73 -0.02 0.49 16 25 C 0.12 1.24 6.59 -3.62 -0.02 1.22 16 26 N -0.72 -7.57 5.61 -59.33 -0.33 -7.90 16 27 C 0.71 9.39 8.60 -88.40 -0.76 8.63 16 28 O -0.58 -9.96 17.29 5.29 0.09 -9.87 16 29 H 0.09 0.82 7.52 -51.93 -0.39 0.43 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 32 H 0.09 0.81 7.73 -51.93 -0.40 0.41 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.45 5.41 -51.93 -0.28 0.16 16 36 H 0.05 0.66 6.40 -51.93 -0.33 0.33 16 37 H 0.10 1.15 5.90 -51.93 -0.31 0.85 16 38 H 0.10 1.72 8.08 -51.93 -0.42 1.30 16 39 H 0.03 0.61 5.71 -51.93 -0.30 0.31 16 40 H 0.07 1.71 7.15 -51.93 -0.37 1.34 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.63 6.04 -51.93 -0.31 0.32 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 46 H 0.09 1.06 7.06 -51.93 -0.37 0.69 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.43 4.09 8.96 -40.82 -0.37 3.72 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -35.87 375.30 -9.98 -45.84 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.13 Total: 1.44 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: -1.07 Total: 19.21 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -2.59 Total: -70.85 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.18 Total: -17.72 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.87 -9.98 -45.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941515635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.189 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds