Wall clock time and date at job start Tue Mar 31 2020 20:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47054 * 125.41113 * 2 1 4 4 C 1.54104 * 103.86189 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.55057 * 118.59254 * 4 3 2 6 6 C 1.50698 * 110.67033 * 241.34662 * 4 3 2 7 7 O 1.21283 * 120.00548 * 97.91349 * 6 4 3 8 8 N 1.34787 * 119.99671 * 277.91437 * 6 4 3 9 9 C 1.47073 * 120.88194 * 359.72263 * 8 6 4 10 10 C 1.53697 * 108.27748 * 128.75430 * 9 8 6 11 11 N 1.46901 * 109.25298 * 54.08195 * 10 9 8 12 12 C 1.46905 * 110.99394 * 172.60925 * 11 10 9 13 13 C 1.53940 * 113.74723 * 40.97724 * 12 11 10 14 14 N 1.47585 * 86.11822 * 222.04688 * 13 12 11 15 15 C 1.36936 * 134.49185 * 204.63733 * 14 13 12 16 16 H 1.07998 * 120.00059 * 179.97438 * 15 14 13 17 17 C 1.38807 * 119.99820 * 0.02562 * 15 14 13 18 18 N 1.31618 * 120.00593 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00031 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47387 * 59.99440 * 19 17 15 21 21 H 1.48500 * 109.47280 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47015 * 299.99890 * 19 17 15 23 23 C 1.47579 * 91.01314 * 24.63729 * 14 13 12 24 24 C 1.46896 * 111.27023 * 296.75393 * 11 10 9 25 25 C 1.47081 * 120.87829 * 179.97438 * 8 6 4 26 26 N 1.47057 * 103.86175 * 359.97438 * 4 3 2 27 27 C 1.33944 * 109.17993 * 0.02562 * 26 4 3 28 28 O 1.21585 * 123.04143 * 180.02562 * 27 26 4 29 29 H 1.08999 * 109.47295 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47311 * 300.03037 * 1 2 3 31 31 H 1.09008 * 109.46918 * 60.02317 * 1 2 3 32 32 H 1.08995 * 110.55082 * 61.40481 * 3 2 1 33 33 H 1.09007 * 110.54786 * 298.59420 * 3 2 1 34 34 H 1.09000 * 109.63064 * 248.52429 * 9 8 6 35 35 H 1.09004 * 109.62755 * 9.10209 * 9 8 6 36 36 H 1.08998 * 109.64696 * 294.07549 * 10 9 8 37 37 H 1.08996 * 109.44498 * 173.95820 * 10 9 8 38 38 H 1.09000 * 112.94014 * 172.71324 * 12 11 10 39 39 H 1.09001 * 113.76641 * 336.34708 * 13 12 11 40 40 H 1.08999 * 113.77262 * 107.74211 * 13 12 11 41 41 H 0.96999 * 120.00730 * 179.97438 * 18 17 15 42 42 H 1.08999 * 113.77085 * 221.06072 * 23 14 13 43 43 H 1.09006 * 113.87003 * 89.67670 * 23 14 13 44 44 H 1.09001 * 109.49093 * 303.14883 * 24 11 10 45 45 H 1.09003 * 109.51543 * 183.08089 * 24 11 10 46 46 H 1.09002 * 109.62917 * 350.89758 * 25 8 6 47 47 H 1.09006 * 109.62426 * 111.28365 * 25 8 6 48 48 H 0.96999 * 125.40959 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0007 5 1 4.2854 0.9465 -0.8970 6 6 4.4940 1.0656 1.2365 7 8 4.5749 0.3183 2.1883 8 7 5.0691 2.2837 1.2852 9 6 4.9881 3.2031 0.1402 10 6 4.4828 4.5627 0.6485 11 7 5.3415 5.0176 1.7501 12 6 5.0027 6.3901 2.1493 13 6 3.4893 6.6695 2.1855 14 7 3.8144 7.9622 1.5520 15 6 3.2043 9.1871 1.5028 16 1 3.6621 9.9968 0.9539 17 6 1.9980 9.3885 2.1594 18 7 1.4403 8.4020 2.8288 19 14 1.1661 11.0597 2.0931 20 1 0.8685 11.4088 0.6807 21 1 -0.0996 11.0138 2.8684 22 1 2.0678 12.0851 2.6768 23 6 5.0610 7.4044 0.9927 24 6 5.2672 4.1023 2.8966 25 6 5.7989 2.7264 2.4830 26 7 3.5537 -0.8249 -0.0003 27 6 2.2411 -1.0917 -0.0002 28 8 1.7945 -2.2226 0.0006 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5143 0.8897 31 1 -0.3633 0.5135 -0.8903 32 1 2.1407 1.7934 0.8961 33 1 2.1406 1.7934 -0.8962 34 1 5.9756 3.3197 -0.3064 35 1 4.2931 2.8060 -0.5998 36 1 3.4573 4.4629 1.0040 37 1 4.5172 5.2892 -0.1634 38 1 5.5322 6.7151 3.0449 39 1 2.9044 6.0039 1.5507 40 1 3.0838 6.7635 3.1929 41 1 0.5975 8.5428 3.2880 42 1 5.9104 8.0852 1.0477 43 1 4.9397 6.9544 0.0072 44 1 4.2307 4.0090 3.2209 45 1 5.8705 4.4945 3.7154 46 1 5.6402 2.0141 3.2926 47 1 6.8634 2.7947 2.2586 48 1 4.2620 -1.4876 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941515635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:10 Heat of formation + Delta-G solvation = 18.300921 kcal Electronic energy + Delta-G solvation = -30466.592278 eV Core-core repulsion = 26365.913404 eV Total energy + Delta-G solvation = -4100.678874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.55027 -41.16792 -40.15487 -37.99210 -37.42291 -35.22717 -35.15276 -33.80777 -32.30439 -30.60228 -29.63551 -28.38760 -27.50810 -26.57682 -25.14345 -24.72010 -24.15292 -22.49694 -21.66491 -20.75074 -19.75997 -18.93624 -18.69860 -18.58174 -17.52706 -17.34298 -16.90986 -16.71644 -16.40624 -16.28750 -16.08779 -15.64282 -15.51087 -15.24846 -15.22154 -14.86474 -14.55635 -14.44087 -13.90684 -13.78241 -13.53072 -13.36374 -13.28143 -13.24023 -13.12662 -12.97821 -12.75084 -12.65199 -12.27302 -12.18264 -12.04294 -11.79811 -11.72007 -11.58210 -11.34669 -11.33018 -10.81402 -10.41191 -9.81776 -9.64821 -9.20490 -8.81608 -7.88976 -5.22226 1.26403 1.46463 1.48779 1.52466 1.54940 1.74914 2.05086 2.46820 2.80923 2.89284 3.20531 3.25468 3.31656 3.52685 3.81042 3.88037 3.88864 4.01420 4.06330 4.19220 4.29389 4.40233 4.42677 4.46642 4.51956 4.55359 4.65222 4.70466 4.76249 4.82656 4.84554 4.88631 4.94492 5.00820 5.06499 5.16411 5.26821 5.40281 5.42913 5.52817 5.56227 5.93841 5.98618 6.10020 6.18255 6.27839 6.35589 6.93154 6.98521 7.39954 7.62907 8.57884 9.26447 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014420 B = 0.002864 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.217129 B = 9774.110018 C =11096.591702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.637 5.637 3 C 0.102 3.898 4 C 0.109 3.891 5 H 0.165 0.835 6 C 0.504 3.496 7 O -0.574 6.574 8 N -0.602 5.602 9 C 0.114 3.886 10 C 0.031 3.969 11 N -0.515 5.515 12 C 0.064 3.936 13 C 0.134 3.866 14 N -0.640 5.640 15 C -0.231 4.231 16 H 0.085 0.915 17 C -0.067 4.067 18 N -0.954 5.954 19 Si 0.975 3.025 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.277 1.277 23 C 0.130 3.870 24 C 0.045 3.955 25 C 0.125 3.875 26 N -0.712 5.712 27 C 0.693 3.307 28 O -0.633 6.633 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.029 0.971 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.027 0.973 40 H 0.024 0.976 41 H 0.246 0.754 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.120 -12.931 -9.620 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.376 5.376 3 C -0.022 4.022 4 C 0.000 4.000 5 H 0.182 0.818 6 C 0.291 3.709 7 O -0.453 6.453 8 N -0.335 5.335 9 C -0.008 4.008 10 C -0.098 4.098 11 N -0.238 5.238 12 C -0.045 4.045 13 C 0.007 3.993 14 N -0.367 5.367 15 C -0.359 4.359 16 H 0.103 0.897 17 C -0.260 4.260 18 N -0.603 5.603 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.224 1.224 22 H -0.203 1.203 23 C 0.005 3.995 24 C -0.083 4.083 25 C 0.002 3.998 26 N -0.372 5.372 27 C 0.394 3.606 28 O -0.515 6.515 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 8.017 -13.627 -9.228 18.307 hybrid contribution -1.467 0.810 0.981 1.942 sum 6.551 -12.817 -8.247 16.589 Atomic orbital electron populations 1.21618 0.74288 1.03637 1.03353 1.47187 1.07333 1.05594 1.77483 1.22569 0.85281 0.88376 1.05935 1.22151 0.97606 0.81922 0.98339 0.81788 1.21165 0.78915 0.81472 0.89379 1.90733 1.61458 1.54061 1.39024 1.48291 1.52710 1.14932 1.17545 1.22309 1.04659 0.86757 0.87069 1.22769 0.94403 0.97420 0.95180 1.62075 1.52719 1.00834 1.08201 1.23820 0.94261 0.87836 0.98616 1.22814 0.94653 0.85704 0.96148 1.46119 1.23869 1.06869 1.59876 1.19364 1.02281 0.87695 1.26582 0.89735 1.25573 0.98593 1.01130 1.00670 1.70005 1.19394 1.32397 1.38510 0.85203 0.77333 0.79493 0.77629 1.20174 1.22411 1.20343 1.22837 0.88339 0.92633 0.95712 1.22402 0.99384 0.92710 0.93843 1.21665 0.96816 0.93674 0.87649 1.44842 1.06187 1.07361 1.78840 1.16119 0.82599 0.84581 0.77342 1.90910 1.76809 1.22930 1.60837 0.90953 0.91249 0.89082 0.90480 0.84436 0.87660 0.86332 0.95313 0.88542 0.88433 0.95577 0.95701 0.94529 0.92725 0.92169 0.96466 0.88759 0.90171 0.88675 0.72084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.82 11.21 127.77 1.43 3.25 16 2 N -0.64 -12.77 3.36 -863.42 -2.90 -15.67 16 3 C 0.10 1.38 6.73 86.65 0.58 1.96 16 4 C 0.11 1.48 3.14 44.51 0.14 1.62 16 5 H 0.17 0.72 6.95 -2.39 -0.02 0.70 16 6 C 0.50 10.01 6.83 87.65 0.60 10.61 16 7 O -0.57 -17.00 16.03 -3.04 -0.05 -17.05 16 8 N -0.60 -10.13 3.00 -817.11 -2.45 -12.59 16 9 C 0.11 1.31 6.40 86.50 0.55 1.86 16 10 C 0.03 0.62 4.59 86.54 0.40 1.02 16 11 N -0.51 -12.26 4.76 -875.15 -4.17 -16.43 16 12 C 0.06 2.08 4.05 46.67 0.19 2.27 16 13 C 0.13 5.85 6.81 86.48 0.59 6.44 16 14 N -0.64 -30.61 3.70 -717.31 -2.65 -33.26 16 15 C -0.23 -12.38 10.70 84.03 0.90 -11.48 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 18 N -0.95 -56.18 11.38 21.65 0.25 -55.93 16 19 Si 0.97 44.40 29.55 68.60 2.03 46.42 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.13 4.54 8.41 86.48 0.73 5.27 16 24 C 0.05 1.03 5.58 86.37 0.48 1.51 16 25 C 0.12 2.37 6.59 86.33 0.57 2.94 16 26 N -0.71 -13.96 5.61 -460.34 -2.58 -16.55 16 27 C 0.69 18.08 8.60 179.57 1.54 19.63 16 28 O -0.63 -22.10 17.29 -3.98 -0.07 -22.17 16 29 H 0.07 1.39 7.52 -2.39 -0.02 1.37 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 1.26 7.73 -2.39 -0.02 1.24 16 33 H 0.14 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.12 0.56 5.41 -2.39 -0.01 0.54 16 36 H 0.03 0.72 6.40 -2.39 -0.02 0.70 16 37 H 0.10 1.97 5.90 -2.39 -0.01 1.96 16 38 H 0.10 3.25 8.08 -2.39 -0.02 3.23 16 39 H 0.03 1.16 5.71 -2.39 -0.01 1.14 16 40 H 0.02 1.29 7.15 -2.39 -0.02 1.27 16 41 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.87 6.04 -2.38 -0.01 1.86 16 44 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.09 2.01 8.07 -2.39 -0.02 1.99 16 46 H 0.08 1.78 7.06 -2.39 -0.02 1.76 16 47 H 0.10 1.51 8.14 -2.38 -0.02 1.50 16 48 H 0.44 7.78 8.96 -92.71 -0.83 6.95 16 Total: -1.00 -82.28 375.30 -3.26 -85.55 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.16 Total: 14.01 kcal Atomic # 6 Polarization: 34.50 SS G_CDS: 9.17 Total: 43.67 kcal Atomic # 7 Polarization: -135.92 SS G_CDS: -14.51 Total: -150.44 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.12 Total: -39.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -82.28 -3.26 -85.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941515635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.848 kcal (2) G-P(sol) polarization free energy of solvation -82.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds