Wall clock time and date at job start Tue Mar 31 2020 21:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00207 * 2 1 4 4 O 1.21278 * 120.00272 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99908 * 0.02562 * 3 2 1 6 6 N 1.46493 * 109.47273 * 179.97438 * 5 3 2 7 7 N 1.40173 * 126.35490 * 270.03054 * 6 5 3 8 8 C 1.29395 * 108.14190 * 179.97438 * 7 6 5 9 9 N 1.37357 * 108.83311 * 359.97438 * 8 7 6 10 10 C 1.46504 * 125.83659 * 180.02562 * 9 8 7 11 11 C 1.34820 * 108.33116 * 359.73562 * 9 8 7 12 12 O 1.21819 * 126.30387 * 180.28232 * 11 9 8 13 13 C 1.46496 * 119.99852 * 180.02562 * 2 1 3 14 14 H 1.09004 * 108.44799 * 182.30618 * 13 2 1 15 15 C 1.52568 * 108.51400 * 64.76569 * 13 2 1 16 16 C 1.50882 * 109.35418 * 153.72873 * 15 13 2 17 17 C 1.53954 * 110.09652 * 91.89265 * 16 15 13 18 18 N 1.47600 * 112.13562 * 319.43381 * 17 16 15 19 19 C 1.36934 * 118.64647 * 137.87287 * 18 17 16 20 20 H 1.08004 * 120.00349 * 206.50172 * 19 18 17 21 21 C 1.38817 * 119.99845 * 26.49519 * 19 18 17 22 22 N 1.31617 * 120.00005 * 15.68619 * 21 19 18 23 23 Si 1.86798 * 119.99984 * 195.68137 * 21 19 18 24 24 H 1.48494 * 109.47385 * 60.00403 * 23 21 19 25 25 H 1.48505 * 109.47147 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47297 * 300.00109 * 23 21 19 27 27 C 1.44666 * 122.54269 * 317.85353 * 18 17 16 28 28 C 1.47092 * 108.51252 * 299.99315 * 13 2 1 29 29 H 1.09007 * 109.46782 * 269.99941 * 1 2 3 30 30 H 1.09005 * 109.47099 * 29.99335 * 1 2 3 31 31 H 1.08997 * 109.47493 * 150.00115 * 1 2 3 32 32 H 1.08998 * 109.47475 * 300.00427 * 5 3 2 33 33 H 1.09008 * 109.46725 * 59.99952 * 5 3 2 34 34 H 1.08006 * 125.58412 * 179.97438 * 8 7 6 35 35 H 1.09004 * 109.46876 * 359.97355 * 10 9 8 36 36 H 1.08992 * 109.47195 * 119.97568 * 10 9 8 37 37 H 1.08997 * 109.46884 * 239.97606 * 10 9 8 38 38 H 1.09002 * 109.49043 * 273.69335 * 15 13 2 39 39 H 1.08998 * 109.49045 * 33.76509 * 15 13 2 40 40 H 1.09003 * 109.36460 * 212.08061 * 16 15 13 41 41 H 1.08995 * 109.37081 * 331.82248 * 16 15 13 42 42 H 1.09002 * 108.94956 * 80.11638 * 17 16 15 43 43 H 1.08995 * 108.94803 * 198.75206 * 17 16 15 44 44 H 0.96996 * 120.00022 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.62081 * 330.84429 * 27 18 17 46 46 H 1.09004 * 109.32197 * 210.89974 * 27 18 17 47 47 H 1.08999 * 109.33378 * 304.31751 * 28 13 2 48 48 H 1.09008 * 109.32552 * 63.97073 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5858 0.0011 7 7 2.8778 4.2165 1.1303 8 6 3.6768 5.1507 0.7263 9 7 3.6866 5.1624 -0.6472 10 6 4.4651 6.0720 -1.4917 11 6 2.8623 4.1897 -1.0855 12 8 2.6313 3.9098 -2.2484 13 6 2.1974 -1.2687 -0.0006 14 1 3.2647 -1.0509 0.0411 15 6 1.9055 -1.9961 -1.3096 16 6 3.0583 -2.9114 -1.6408 17 6 2.8031 -4.3146 -1.0611 18 7 2.2087 -4.2590 0.2888 19 6 1.1931 -5.1249 0.5951 20 1 0.4685 -4.8616 1.3515 21 6 1.0947 -6.3412 -0.0667 22 7 2.1201 -6.8030 -0.7507 23 14 -0.4927 -7.3224 0.0135 24 1 -1.6029 -6.5151 -0.5530 25 1 -0.3408 -8.5746 -0.7702 26 1 -0.7964 -7.6580 1.4279 27 6 2.6579 -3.3260 1.2991 28 6 1.8271 -2.0223 1.2071 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 0.7584 2.5303 -0.8891 33 1 0.7591 2.5298 0.8909 34 1 4.2432 5.8128 1.3645 35 1 5.0431 6.7477 -0.8612 36 1 5.1418 5.4939 -2.1207 37 1 3.7894 6.6510 -2.1211 38 1 0.9935 -2.5835 -1.2036 39 1 1.7782 -1.2673 -2.1100 40 1 3.1646 -2.9815 -2.7234 41 1 3.9756 -2.5069 -1.2131 42 1 2.1262 -4.8537 -1.7239 43 1 3.7490 -4.8535 -1.0093 44 1 2.0515 -7.6530 -1.2128 45 1 3.7119 -3.0965 1.1426 46 1 2.5265 -3.7714 2.2853 47 1 2.0188 -1.4095 2.0879 48 1 0.7669 -2.2724 1.1653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948566405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:31 Heat of formation + Delta-G solvation = 52.808877 kcal Electronic energy + Delta-G solvation = -30421.227051 eV Core-core repulsion = 26322.044554 eV Total energy + Delta-G solvation = -4099.182497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.60565 -40.10389 -37.76271 -37.39177 -35.53591 -35.26110 -33.04925 -32.01391 -31.60608 -30.35596 -28.52605 -27.13268 -26.87564 -25.86295 -24.13749 -23.35117 -22.76890 -21.59977 -20.15808 -19.24185 -19.04268 -17.87968 -17.46195 -16.74237 -16.53792 -16.34402 -15.94634 -15.65950 -15.24509 -15.06772 -14.79149 -14.13301 -13.87509 -13.65029 -13.51210 -13.34757 -13.15641 -13.12305 -12.84057 -12.69496 -12.47153 -12.37236 -12.19331 -12.06464 -11.91815 -11.34397 -11.20499 -10.81292 -10.71214 -10.58464 -10.46845 -10.42241 -10.14934 -10.13436 -9.81457 -9.72377 -9.58486 -9.53527 -8.72124 -8.47809 -8.36666 -6.64466 -5.75797 -3.19703 1.45371 1.74801 2.49602 2.63426 2.83355 3.19421 3.38168 3.44494 3.44739 4.12839 4.41781 4.46063 4.51030 4.63398 4.86458 4.88668 5.06636 5.13673 5.16542 5.24963 5.37187 5.42362 5.54258 5.56493 5.67245 5.71430 5.82379 5.83969 6.05159 6.06214 6.22469 6.26558 6.36411 6.49948 6.58615 6.68426 6.79454 6.82482 6.88503 6.96161 7.00585 7.38699 7.47176 7.51565 7.74505 7.84412 7.85179 8.22357 8.49158 9.26188 9.93104 10.39319 11.31505 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.002487 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.103230 B =11257.231102 C =11450.570824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.494 3.506 4 O -0.531 6.531 5 C 0.144 3.856 6 N -0.436 5.436 7 N -0.273 5.273 8 C 0.253 3.747 9 N -0.562 5.562 10 C 0.102 3.898 11 C 0.652 3.348 12 O -0.552 6.552 13 C 0.156 3.844 14 H 0.086 0.914 15 C -0.109 4.109 16 C -0.141 4.141 17 C 0.178 3.822 18 N -0.589 5.589 19 C -0.258 4.258 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.162 3.838 28 C -0.152 4.152 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.231 0.769 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.024 0.976 44 H 0.254 0.746 45 H 0.034 0.966 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 26.176 1.984 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C 0.280 3.720 4 O -0.407 6.407 5 C 0.019 3.981 6 N -0.256 5.256 7 N -0.093 5.093 8 C -0.046 4.046 9 N -0.292 5.292 10 C -0.040 4.040 11 C 0.351 3.649 12 O -0.425 6.425 13 C 0.055 3.945 14 H 0.104 0.896 15 C -0.148 4.148 16 C -0.180 4.180 17 C 0.053 3.947 18 N -0.311 5.311 19 C -0.388 4.388 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.033 3.967 28 C -0.193 4.193 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.247 0.753 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.213 25.271 1.827 25.338 hybrid contribution -0.545 -0.203 -0.554 0.803 sum -0.332 25.068 1.273 25.102 Atomic orbital electron populations 1.21831 0.79800 1.03403 1.02068 1.48304 1.07091 1.06208 1.72530 1.20792 0.88555 0.85537 0.77138 1.90705 1.13709 1.86927 1.49408 1.21316 0.88926 0.81526 1.06321 1.48242 1.42512 1.31676 1.03206 1.76972 1.13251 1.08503 1.10614 1.25924 0.97963 0.97810 0.82911 1.45866 1.42653 1.33197 1.07442 1.21794 0.95354 0.92138 0.94698 1.16643 0.81409 0.81256 0.85557 1.91092 1.66548 1.69591 1.15223 1.20196 0.97135 0.80988 0.96202 0.89595 1.21273 1.01013 0.97662 0.94811 1.21985 0.96989 0.99144 0.99924 1.21024 0.97837 0.90015 0.85817 1.43682 1.40976 1.38656 1.07761 1.19137 1.02988 0.95713 1.20942 0.91796 1.25036 0.97147 0.96274 1.00961 1.70062 1.28209 1.19930 1.36561 0.86407 0.83626 0.79313 0.77600 1.21114 1.21716 1.20954 1.20582 0.94525 0.88505 0.93078 1.21851 1.02797 0.99161 0.95493 0.92203 0.91685 0.89924 0.85974 0.85869 0.75272 0.88851 0.90454 0.90501 0.90375 0.93461 0.92688 0.93507 0.90745 0.95749 0.93634 0.94789 0.93220 0.93187 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 9.20 59.85 0.55 1.33 16 2 N -0.61 -8.98 2.59 -177.48 -0.46 -9.44 16 3 C 0.49 7.80 7.74 -10.98 -0.09 7.71 16 4 O -0.53 -10.69 15.72 5.56 0.09 -10.60 16 5 C 0.14 1.72 5.42 -5.20 -0.03 1.69 16 6 N -0.44 -5.88 3.11 -66.31 -0.21 -6.08 16 7 N -0.27 -3.14 12.53 29.87 0.37 -2.76 16 8 C 0.25 1.93 12.61 -89.13 -1.12 0.81 16 9 N -0.56 -5.40 3.14 -130.10 -0.41 -5.81 16 10 C 0.10 0.54 11.08 59.85 0.66 1.20 16 11 C 0.65 9.36 8.61 -86.73 -0.75 8.61 16 12 O -0.55 -9.76 17.77 5.08 0.09 -9.67 16 13 C 0.16 2.74 1.96 -70.99 -0.14 2.60 16 14 H 0.09 1.72 6.02 -51.93 -0.31 1.41 16 15 C -0.11 -2.00 4.34 -28.02 -0.12 -2.13 16 16 C -0.14 -2.81 5.70 -27.30 -0.16 -2.96 16 17 C 0.18 4.27 4.66 -2.94 -0.01 4.25 16 18 N -0.59 -14.36 2.27 -172.02 -0.39 -14.75 16 19 C -0.26 -6.86 9.45 -15.06 -0.14 -7.00 16 20 H 0.06 1.67 7.88 -52.48 -0.41 1.25 16 21 C 0.00 0.12 4.87 -17.43 -0.08 0.04 16 22 N -0.90 -26.00 11.01 55.49 0.61 -25.39 16 23 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.16 3.41 5.65 -4.04 -0.02 3.38 16 28 C -0.15 -2.71 4.89 -28.58 -0.14 -2.85 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 6.44 -51.93 -0.33 0.18 16 31 H 0.08 0.97 7.25 -51.93 -0.38 0.59 16 32 H 0.12 1.25 7.37 -51.93 -0.38 0.87 16 33 H 0.12 1.08 8.11 -51.92 -0.42 0.66 16 34 H 0.23 0.38 8.06 -52.48 -0.42 -0.04 16 35 H 0.09 0.11 8.07 -51.93 -0.42 -0.31 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 1.55 7.23 -51.93 -0.38 1.18 16 39 H 0.05 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.93 7.31 -51.93 -0.38 0.55 16 42 H 0.07 1.97 6.33 -51.93 -0.33 1.64 16 43 H 0.02 0.64 8.03 -51.93 -0.42 0.22 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.03 0.71 8.05 -51.93 -0.42 0.29 16 46 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.07 1.20 7.62 -51.92 -0.40 0.81 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -37.93 384.08 -8.61 -46.54 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.48 Total: -0.90 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: -1.59 Total: 16.69 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.48 Total: -64.24 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.18 Total: -20.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.93 -8.61 -46.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948566405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.347 kcal (2) G-P(sol) polarization free energy of solvation -37.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds