Wall clock time and date at job start Tue Mar 31 2020 21:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00207 * 2 1 4 4 O 1.21278 * 120.00272 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99908 * 0.02562 * 3 2 1 6 6 N 1.46493 * 109.47273 * 179.97438 * 5 3 2 7 7 N 1.40173 * 126.35490 * 270.03054 * 6 5 3 8 8 C 1.29395 * 108.14190 * 179.97438 * 7 6 5 9 9 N 1.37357 * 108.83311 * 359.97438 * 8 7 6 10 10 C 1.46504 * 125.83659 * 180.02562 * 9 8 7 11 11 C 1.34820 * 108.33116 * 359.73562 * 9 8 7 12 12 O 1.21819 * 126.30387 * 180.28232 * 11 9 8 13 13 C 1.46496 * 119.99852 * 180.02562 * 2 1 3 14 14 H 1.09004 * 108.44799 * 182.30618 * 13 2 1 15 15 C 1.52568 * 108.51400 * 64.76569 * 13 2 1 16 16 C 1.50882 * 109.35418 * 153.72873 * 15 13 2 17 17 C 1.53954 * 110.09652 * 91.89265 * 16 15 13 18 18 N 1.47600 * 112.13562 * 319.43381 * 17 16 15 19 19 C 1.36934 * 118.64647 * 137.87287 * 18 17 16 20 20 H 1.08004 * 120.00349 * 206.50172 * 19 18 17 21 21 C 1.38817 * 119.99845 * 26.49519 * 19 18 17 22 22 N 1.31617 * 120.00005 * 15.68619 * 21 19 18 23 23 Si 1.86798 * 119.99984 * 195.68137 * 21 19 18 24 24 H 1.48494 * 109.47385 * 60.00403 * 23 21 19 25 25 H 1.48505 * 109.47147 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47297 * 300.00109 * 23 21 19 27 27 C 1.44666 * 122.54269 * 317.85353 * 18 17 16 28 28 C 1.47092 * 108.51252 * 299.99315 * 13 2 1 29 29 H 1.09007 * 109.46782 * 269.99941 * 1 2 3 30 30 H 1.09005 * 109.47099 * 29.99335 * 1 2 3 31 31 H 1.08997 * 109.47493 * 150.00115 * 1 2 3 32 32 H 1.08998 * 109.47475 * 300.00427 * 5 3 2 33 33 H 1.09008 * 109.46725 * 59.99952 * 5 3 2 34 34 H 1.08006 * 125.58412 * 179.97438 * 8 7 6 35 35 H 1.09004 * 109.46876 * 359.97355 * 10 9 8 36 36 H 1.08992 * 109.47195 * 119.97568 * 10 9 8 37 37 H 1.08997 * 109.46884 * 239.97606 * 10 9 8 38 38 H 1.09002 * 109.49043 * 273.69335 * 15 13 2 39 39 H 1.08998 * 109.49045 * 33.76509 * 15 13 2 40 40 H 1.09003 * 109.36460 * 212.08061 * 16 15 13 41 41 H 1.08995 * 109.37081 * 331.82248 * 16 15 13 42 42 H 1.09002 * 108.94956 * 80.11638 * 17 16 15 43 43 H 1.08995 * 108.94803 * 198.75206 * 17 16 15 44 44 H 0.96996 * 120.00022 * 179.97438 * 22 21 19 45 45 H 1.08994 * 109.62081 * 330.84429 * 27 18 17 46 46 H 1.09004 * 109.32197 * 210.89974 * 27 18 17 47 47 H 1.08999 * 109.33378 * 304.31751 * 28 13 2 48 48 H 1.09008 * 109.32552 * 63.97073 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5858 0.0011 7 7 2.8778 4.2165 1.1303 8 6 3.6768 5.1507 0.7263 9 7 3.6866 5.1624 -0.6472 10 6 4.4651 6.0720 -1.4917 11 6 2.8623 4.1897 -1.0855 12 8 2.6313 3.9098 -2.2484 13 6 2.1974 -1.2687 -0.0006 14 1 3.2647 -1.0509 0.0411 15 6 1.9055 -1.9961 -1.3096 16 6 3.0583 -2.9114 -1.6408 17 6 2.8031 -4.3146 -1.0611 18 7 2.2087 -4.2590 0.2888 19 6 1.1931 -5.1249 0.5951 20 1 0.4685 -4.8616 1.3515 21 6 1.0947 -6.3412 -0.0667 22 7 2.1201 -6.8030 -0.7507 23 14 -0.4927 -7.3224 0.0135 24 1 -1.6029 -6.5151 -0.5530 25 1 -0.3408 -8.5746 -0.7702 26 1 -0.7964 -7.6580 1.4279 27 6 2.6579 -3.3260 1.2991 28 6 1.8271 -2.0223 1.2071 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 0.7584 2.5303 -0.8891 33 1 0.7591 2.5298 0.8909 34 1 4.2432 5.8128 1.3645 35 1 5.0431 6.7477 -0.8612 36 1 5.1418 5.4939 -2.1207 37 1 3.7894 6.6510 -2.1211 38 1 0.9935 -2.5835 -1.2036 39 1 1.7782 -1.2673 -2.1100 40 1 3.1646 -2.9815 -2.7234 41 1 3.9756 -2.5069 -1.2131 42 1 2.1262 -4.8537 -1.7239 43 1 3.7490 -4.8535 -1.0093 44 1 2.0515 -7.6530 -1.2128 45 1 3.7119 -3.0965 1.1426 46 1 2.5265 -3.7714 2.2853 47 1 2.0188 -1.4095 2.0879 48 1 0.7669 -2.2724 1.1653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948566405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:29 Heat of formation + Delta-G solvation = 28.439936 kcal Electronic energy + Delta-G solvation = -30422.283768 eV Core-core repulsion = 26322.044554 eV Total energy + Delta-G solvation = -4100.239213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.42100 -41.37971 -39.31164 -38.42930 -36.90802 -36.21541 -34.66459 -33.37444 -32.99597 -31.98339 -29.43564 -28.14390 -27.86515 -27.41483 -25.77427 -25.01302 -23.69877 -22.51095 -21.49742 -21.06350 -20.32874 -18.80740 -18.54076 -18.45094 -17.60316 -17.23704 -17.09846 -16.89065 -16.70215 -16.32000 -15.80573 -15.68370 -15.35011 -15.19902 -14.90558 -14.50210 -14.27032 -14.16263 -14.00088 -13.65465 -13.57193 -13.49295 -13.33579 -13.19493 -13.09994 -12.96692 -12.92309 -12.66216 -12.40765 -12.13260 -11.98104 -11.81368 -11.61809 -11.50917 -11.44776 -11.40499 -11.38744 -10.70304 -10.42985 -9.70612 -9.65785 -8.65875 -7.83035 -5.29884 0.65501 1.08966 1.47126 1.49149 1.50878 1.54113 1.57529 1.97011 2.29016 2.53917 3.30969 3.38023 3.44600 3.65538 3.77705 4.02482 4.06400 4.08830 4.10666 4.19625 4.35007 4.39223 4.40970 4.41902 4.47905 4.64159 4.67987 4.72154 4.78143 4.85893 4.88418 4.95634 4.97834 5.01051 5.09564 5.12402 5.21114 5.27312 5.43678 5.54187 5.55596 5.68068 5.68713 5.78644 6.34028 6.42578 6.60210 6.90284 7.05027 7.19660 7.94253 8.36681 9.22730 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.002487 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.103230 B =11257.231102 C =11450.570824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.606 5.606 3 C 0.490 3.510 4 O -0.583 6.583 5 C 0.147 3.853 6 N -0.446 5.446 7 N -0.312 5.312 8 C 0.278 3.722 9 N -0.559 5.559 10 C 0.094 3.906 11 C 0.630 3.370 12 O -0.601 6.601 13 C 0.163 3.837 14 H 0.060 0.940 15 C -0.097 4.097 16 C -0.130 4.130 17 C 0.192 3.808 18 N -0.601 5.601 19 C -0.260 4.260 20 H 0.071 0.929 21 C -0.050 4.050 22 N -0.939 5.939 23 Si 0.965 3.035 24 H -0.275 1.275 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.157 3.843 28 C -0.131 4.131 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.291 0.709 35 H 0.144 0.856 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.046 0.954 43 H -0.009 1.009 44 H 0.248 0.752 45 H 0.030 0.970 46 H 0.047 0.953 47 H 0.065 0.935 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 29.225 3.403 29.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.338 5.338 3 C 0.277 3.723 4 O -0.463 6.463 5 C 0.022 3.978 6 N -0.265 5.265 7 N -0.133 5.133 8 C -0.020 4.020 9 N -0.287 5.287 10 C -0.047 4.047 11 C 0.329 3.671 12 O -0.478 6.478 13 C 0.060 3.940 14 H 0.079 0.921 15 C -0.136 4.136 16 C -0.170 4.170 17 C 0.066 3.934 18 N -0.323 5.323 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.246 4.246 22 N -0.585 5.585 23 Si 0.794 3.206 24 H -0.201 1.201 25 H -0.226 1.226 26 H -0.202 1.202 27 C 0.030 3.970 28 C -0.171 4.171 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.306 0.694 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.009 0.991 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.084 0.916 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.095 28.384 3.296 28.596 hybrid contribution -0.038 -1.061 -0.936 1.416 sum -1.133 27.322 2.360 27.447 Atomic orbital electron populations 1.22140 0.77013 1.04729 1.03844 1.48276 1.08688 1.04919 1.71906 1.21520 0.88168 0.86775 0.75812 1.90674 1.16095 1.87707 1.51814 1.21472 0.88577 0.79139 1.08630 1.48427 1.42687 1.31754 1.03631 1.76984 1.15637 1.10488 1.10149 1.27173 0.95907 0.96522 0.82357 1.46139 1.41555 1.32296 1.08685 1.22163 0.95179 0.91861 0.95449 1.17090 0.82308 0.82421 0.85278 1.91029 1.68377 1.71305 1.17076 1.19835 0.96214 0.82361 0.95546 0.92146 1.21130 0.99406 0.97278 0.95752 1.21840 0.97743 0.96963 1.00412 1.20735 0.95271 0.91695 0.85664 1.43857 1.40858 1.39087 1.08503 1.19473 1.03287 0.95811 1.20459 0.91139 1.25797 0.99958 0.97525 1.01276 1.70237 1.30137 1.20167 1.37935 0.85374 0.80137 0.77496 0.77617 1.20134 1.22579 1.20172 1.20716 0.94961 0.89326 0.92031 1.21562 1.01923 0.97352 0.96310 0.90160 0.88312 0.90761 0.84454 0.82445 0.69392 0.83792 0.91788 0.90299 0.91550 0.92381 0.91415 0.93606 0.93540 0.99109 0.94310 0.95166 0.93493 0.91618 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.20 9.20 127.77 1.18 2.38 16 2 N -0.61 -16.95 2.59 -833.81 -2.16 -19.11 16 3 C 0.49 14.94 7.74 87.66 0.68 15.62 16 4 O -0.58 -23.60 15.72 -3.02 -0.05 -23.65 16 5 C 0.15 3.21 5.42 85.64 0.46 3.67 16 6 N -0.45 -11.42 3.11 -481.77 -1.50 -12.92 16 7 N -0.31 -6.45 12.53 -59.42 -0.74 -7.20 16 8 C 0.28 3.29 12.61 179.83 2.27 5.56 16 9 N -0.56 -9.56 3.14 -683.67 -2.15 -11.71 16 10 C 0.09 0.76 11.08 127.77 1.42 2.18 16 11 C 0.63 17.72 8.61 178.99 1.54 19.26 16 12 O -0.60 -21.62 17.77 -4.73 -0.08 -21.71 16 13 C 0.16 5.65 1.96 43.01 0.08 5.74 16 14 H 0.06 2.45 6.02 -2.39 -0.01 2.43 16 15 C -0.10 -3.55 4.34 29.76 0.13 -3.42 16 16 C -0.13 -5.29 5.70 30.23 0.17 -5.12 16 17 C 0.19 9.54 4.66 86.49 0.40 9.94 16 18 N -0.60 -29.82 2.27 -698.15 -1.59 -31.41 16 19 C -0.26 -13.90 9.45 84.04 0.79 -13.10 16 20 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 21 C -0.05 -2.79 4.87 84.86 0.41 -2.38 16 22 N -0.94 -55.76 11.01 21.65 0.24 -55.52 16 23 Si 0.97 44.37 29.58 68.60 2.03 46.40 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 27 C 0.16 6.65 5.65 87.36 0.49 7.14 16 28 C -0.13 -4.53 4.89 29.40 0.14 -4.39 16 29 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.10 1.20 6.44 -2.38 -0.02 1.18 16 31 H 0.07 1.56 7.25 -2.39 -0.02 1.54 16 32 H 0.14 2.53 7.37 -2.39 -0.02 2.51 16 33 H 0.16 2.26 8.11 -2.38 -0.02 2.24 16 34 H 0.29 -0.71 8.06 -2.91 -0.02 -0.73 16 35 H 0.14 -0.33 8.07 -2.38 -0.02 -0.35 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 2.61 7.23 -2.39 -0.02 2.59 16 39 H 0.06 1.99 8.05 -2.39 -0.02 1.97 16 40 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.05 1.86 7.31 -2.39 -0.02 1.84 16 42 H 0.05 2.56 6.33 -2.39 -0.02 2.54 16 43 H -0.01 -0.51 8.03 -2.39 -0.02 -0.53 16 44 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 45 H 0.03 1.28 8.05 -2.39 -0.02 1.26 16 46 H 0.05 1.98 7.99 -2.39 -0.02 1.97 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.07 2.36 7.62 -2.38 -0.02 2.34 16 Total: -1.00 -88.07 384.08 5.14 -82.93 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.96 Total: 10.81 kcal Atomic # 6 Polarization: 32.90 SS G_CDS: 10.18 Total: 43.08 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -7.90 Total: -137.87 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.13 Total: -45.36 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -88.07 5.14 -82.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948566405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.374 kcal (2) G-P(sol) polarization free energy of solvation -88.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds