Wall clock time and date at job start Tue Mar 31 2020 21:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00065 * 2 1 4 4 O 1.21274 * 120.00150 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99735 * 0.02562 * 3 2 1 6 6 N 1.46496 * 109.47124 * 179.97438 * 5 3 2 7 7 N 1.40169 * 126.35168 * 269.68923 * 6 5 3 8 8 C 1.29400 * 108.14082 * 179.87539 * 7 6 5 9 9 N 1.37352 * 108.83115 * 0.38611 * 8 7 6 10 10 C 1.46497 * 125.83570 * 179.77104 * 9 8 7 11 11 C 1.34819 * 108.33588 * 359.75211 * 9 8 7 12 12 O 1.21807 * 126.30635 * 180.02562 * 11 9 8 13 13 C 1.46506 * 119.99936 * 180.02562 * 2 1 3 14 14 C 1.52997 * 109.47289 * 60.00001 * 13 2 1 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47518 * 59.99828 * 15 14 13 17 17 N 1.46496 * 109.47432 * 180.02562 * 16 15 14 18 18 C 1.36939 * 119.99453 * 275.00060 * 17 16 15 19 19 H 1.07995 * 120.00386 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99964 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00299 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99685 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47086 * 90.00424 * 22 20 18 24 24 H 1.48505 * 109.46910 * 210.00406 * 22 20 18 25 25 H 1.48496 * 109.47310 * 330.00109 * 22 20 18 26 26 C 1.53005 * 109.46632 * 300.00318 * 16 15 14 27 27 C 1.52996 * 109.47571 * 60.00168 * 26 16 15 28 28 H 1.08999 * 109.47256 * 269.99474 * 1 2 3 29 29 H 1.08998 * 109.47416 * 29.99577 * 1 2 3 30 30 H 1.09008 * 109.47058 * 150.00176 * 1 2 3 31 31 H 1.09000 * 109.47333 * 299.99429 * 5 3 2 32 32 H 1.09002 * 109.47152 * 59.99956 * 5 3 2 33 33 H 1.08006 * 125.58658 * 180.13734 * 8 7 6 34 34 H 1.08996 * 109.47642 * 269.97462 * 10 9 8 35 35 H 1.09001 * 109.47305 * 29.97645 * 10 9 8 36 36 H 1.09003 * 109.47288 * 149.97282 * 10 9 8 37 37 H 1.09001 * 109.47060 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.46832 * 299.99854 * 14 13 2 39 39 H 1.08996 * 109.46952 * 59.99873 * 14 13 2 40 40 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 41 41 H 1.09004 * 109.47552 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.47194 * 59.99866 * 16 15 14 43 43 H 0.96994 * 120.00546 * 94.99704 * 17 16 15 44 44 H 0.97000 * 120.00229 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.47420 * 299.99415 * 26 16 15 46 46 H 1.09004 * 109.46832 * 179.97438 * 26 16 15 47 47 H 1.08992 * 109.47346 * 180.02562 * 27 26 16 48 48 H 1.09001 * 109.47364 * 59.99212 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4722 0.0006 6 7 2.3373 3.5858 0.0011 7 7 2.8725 4.2208 1.1303 8 6 3.6750 5.1521 0.7263 9 7 3.6850 5.1637 -0.6471 10 6 4.4628 6.0737 -1.4915 11 6 2.8570 4.1942 -1.0855 12 8 2.6218 3.9180 -2.2483 13 6 2.1975 -1.2688 -0.0006 14 6 1.8279 -2.0705 -1.2501 15 6 2.5924 -3.3958 -1.2504 16 6 2.2223 -4.1984 -0.0015 17 7 2.9548 -5.4671 -0.0014 18 6 2.4560 -6.5456 -0.6821 19 1 1.5226 -6.4610 -1.2186 20 6 3.1498 -7.7480 -0.6817 21 7 2.6702 -8.7847 -1.3355 22 14 4.7640 -7.8945 0.2469 23 1 4.4957 -8.3346 1.6396 24 1 5.6346 -8.8904 -0.4280 25 1 5.4450 -6.5750 0.2672 26 6 2.5919 -3.3965 1.2481 27 6 1.8273 -2.0713 1.2484 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8901 -0.5138 31 1 0.7584 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 4.2408 5.8147 1.3645 34 1 3.8745 6.9669 -1.7014 35 1 5.3794 6.3559 -0.9734 36 1 4.7136 5.5755 -2.4280 37 1 3.2692 -1.0696 0.0000 38 1 0.7562 -2.2697 -1.2502 39 1 2.0912 -1.4986 -2.1398 40 1 3.6641 -3.1970 -1.2501 41 1 2.3288 -3.9673 -2.1404 42 1 1.1506 -4.3972 -0.0017 43 1 3.7930 -5.5432 0.4807 44 1 3.1548 -9.6250 -1.3349 45 1 3.6636 -3.1977 1.2484 46 1 2.3278 -3.9681 2.1379 47 1 2.0910 -1.4999 2.1383 48 1 0.7556 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963599436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:49 Heat of formation + Delta-G solvation = 31.662802 kcal Electronic energy + Delta-G solvation = -29587.598701 eV Core-core repulsion = 25487.499242 eV Total energy + Delta-G solvation = -4100.099459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.72945 -40.31124 -38.16873 -37.52370 -35.71882 -35.46495 -33.56122 -32.21457 -31.10634 -30.48356 -29.03448 -28.05609 -27.26425 -26.58707 -23.63504 -22.94004 -22.36249 -21.80404 -21.00603 -19.67926 -19.31833 -18.03522 -17.73270 -17.38880 -16.74158 -16.49716 -16.30688 -15.89430 -15.45001 -15.10608 -14.85676 -14.45044 -14.06982 -13.95735 -13.63000 -13.53820 -13.35140 -13.19566 -12.90467 -12.80893 -12.74790 -12.54256 -12.49415 -12.22913 -12.12990 -11.93070 -11.74648 -10.98536 -10.88369 -10.84016 -10.76780 -10.62777 -10.57412 -10.24725 -10.14025 -9.85388 -9.75150 -9.55276 -8.88727 -8.85882 -8.71514 -7.23952 -5.74813 -3.09872 1.32023 1.62644 2.35582 2.38660 2.68387 2.93884 3.40083 3.43712 3.47653 4.02761 4.18256 4.36111 4.52449 4.61670 4.68901 4.77414 4.83748 4.87794 4.97069 4.98446 5.06528 5.12515 5.23693 5.38975 5.46166 5.46885 5.50978 5.60680 5.62996 5.70457 5.78801 5.80313 5.96189 6.12526 6.16051 6.20201 6.23197 6.30981 6.46975 6.54261 6.62150 6.89874 7.04480 7.18469 7.26264 7.72291 7.96070 8.01943 8.44600 9.23492 9.96407 10.16544 11.43576 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.002165 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.356472 B =12928.797844 C =13179.968098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.497 3.503 4 O -0.527 6.527 5 C 0.146 3.854 6 N -0.438 5.438 7 N -0.274 5.274 8 C 0.256 3.744 9 N -0.562 5.562 10 C 0.099 3.901 11 C 0.652 3.348 12 O -0.551 6.551 13 C 0.140 3.860 14 C -0.122 4.122 15 C -0.133 4.133 16 C 0.183 3.817 17 N -0.750 5.750 18 C -0.241 4.241 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.884 3.116 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.125 4.125 27 C -0.117 4.117 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.232 0.768 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.832 33.682 5.804 34.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.282 3.718 4 O -0.402 6.402 5 C 0.020 3.980 6 N -0.258 5.258 7 N -0.095 5.095 8 C -0.043 4.043 9 N -0.291 5.291 10 C -0.043 4.043 11 C 0.352 3.648 12 O -0.424 6.424 13 C 0.038 3.962 14 C -0.161 4.161 15 C -0.173 4.173 16 C 0.073 3.927 17 N -0.392 5.392 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.164 4.164 27 C -0.156 4.156 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.248 0.752 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.953 32.787 5.617 33.395 hybrid contribution 1.513 0.087 0.009 1.515 sum -1.440 32.873 5.626 33.382 Atomic orbital electron populations 1.21902 0.79514 1.03771 1.02273 1.47954 1.07094 1.05846 1.73100 1.20852 0.88552 0.85520 0.76845 1.90727 1.13725 1.86894 1.48848 1.21281 0.88916 0.81309 1.06475 1.48211 1.42891 1.31438 1.03307 1.76983 1.13372 1.08629 1.10473 1.25923 0.97713 0.97713 0.82978 1.45857 1.42454 1.33319 1.07455 1.21831 0.94967 0.92155 0.95314 1.16649 0.81454 0.81210 0.85529 1.91094 1.66389 1.69739 1.15186 1.21276 0.97889 0.81327 0.95753 1.21868 1.00922 0.96909 0.96439 1.22198 0.99532 0.93954 1.01657 1.20203 0.96098 0.85248 0.91111 1.42805 1.25360 1.08565 1.62426 1.19074 1.05659 0.88096 1.24241 0.89227 1.24676 0.98483 0.95892 1.00242 1.69698 1.39989 1.02037 1.46563 0.86552 0.84920 0.77203 0.79891 1.21133 1.21821 1.20298 1.21813 1.00009 0.94824 0.99750 1.21779 1.00895 0.96145 0.96771 0.91993 0.91252 0.89864 0.85828 0.85738 0.75215 0.90815 0.89243 0.89363 0.88287 0.91756 0.92338 0.92618 0.91149 0.92671 0.80687 0.93118 0.92204 0.91358 0.92128 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 9.30 59.85 0.56 1.04 16 2 N -0.61 -6.86 2.76 -173.93 -0.48 -7.34 16 3 C 0.50 6.51 7.74 -10.99 -0.09 6.43 16 4 O -0.53 -9.33 15.76 5.56 0.09 -9.24 16 5 C 0.15 1.41 5.42 -5.20 -0.03 1.38 16 6 N -0.44 -5.16 3.11 -66.31 -0.21 -5.37 16 7 N -0.27 -2.75 12.53 29.87 0.37 -2.37 16 8 C 0.26 1.65 12.66 -89.13 -1.13 0.52 16 9 N -0.56 -4.73 3.14 -130.11 -0.41 -5.14 16 10 C 0.10 0.43 11.05 59.85 0.66 1.09 16 11 C 0.65 8.42 8.60 -86.73 -0.75 7.67 16 12 O -0.55 -8.94 17.71 5.09 0.09 -8.85 16 13 C 0.14 1.89 2.52 -67.93 -0.17 1.72 16 14 C -0.12 -1.73 5.18 -26.73 -0.14 -1.86 16 15 C -0.13 -2.33 5.50 -26.73 -0.15 -2.48 16 16 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 17 N -0.75 -17.78 4.92 -53.42 -0.26 -18.04 16 18 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 22 Si 0.88 22.45 27.74 -169.99 -4.71 17.74 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 26 C -0.13 -1.95 5.39 -26.73 -0.14 -2.10 16 27 C -0.12 -1.49 5.20 -26.73 -0.14 -1.63 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.33 6.44 -51.93 -0.33 0.00 16 30 H 0.08 0.60 6.43 -51.92 -0.33 0.27 16 31 H 0.12 0.99 7.37 -51.93 -0.38 0.61 16 32 H 0.12 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.23 0.15 8.06 -52.48 -0.42 -0.28 16 34 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.10 1.61 6.90 -51.93 -0.36 1.25 16 38 H 0.06 0.82 6.66 -51.93 -0.35 0.47 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 43 H 0.36 8.50 5.66 -40.82 -0.23 8.27 16 44 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -40.67 388.72 -8.30 -48.97 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.46 Total: 4.48 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.95 Total: 8.08 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.21 Total: -67.03 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.18 Total: -18.09 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -40.67 -8.30 -48.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963599436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.634 kcal (2) G-P(sol) polarization free energy of solvation -40.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds