Wall clock time and date at job start Tue Mar 31 2020 21:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00065 * 2 1 4 4 O 1.21274 * 120.00150 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99735 * 0.02562 * 3 2 1 6 6 N 1.46496 * 109.47124 * 179.97438 * 5 3 2 7 7 N 1.40169 * 126.35168 * 269.68923 * 6 5 3 8 8 C 1.29400 * 108.14082 * 179.87539 * 7 6 5 9 9 N 1.37352 * 108.83115 * 0.38611 * 8 7 6 10 10 C 1.46497 * 125.83570 * 179.77104 * 9 8 7 11 11 C 1.34819 * 108.33588 * 359.75211 * 9 8 7 12 12 O 1.21807 * 126.30635 * 180.02562 * 11 9 8 13 13 C 1.46506 * 119.99936 * 180.02562 * 2 1 3 14 14 C 1.52997 * 109.47289 * 60.00001 * 13 2 1 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47518 * 59.99828 * 15 14 13 17 17 N 1.46496 * 109.47432 * 180.02562 * 16 15 14 18 18 C 1.36939 * 119.99453 * 275.00060 * 17 16 15 19 19 H 1.07995 * 120.00386 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99964 * 180.02562 * 18 17 16 21 21 N 1.31613 * 120.00299 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99685 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47086 * 90.00424 * 22 20 18 24 24 H 1.48505 * 109.46910 * 210.00406 * 22 20 18 25 25 H 1.48496 * 109.47310 * 330.00109 * 22 20 18 26 26 C 1.53005 * 109.46632 * 300.00318 * 16 15 14 27 27 C 1.52996 * 109.47571 * 60.00168 * 26 16 15 28 28 H 1.08999 * 109.47256 * 269.99474 * 1 2 3 29 29 H 1.08998 * 109.47416 * 29.99577 * 1 2 3 30 30 H 1.09008 * 109.47058 * 150.00176 * 1 2 3 31 31 H 1.09000 * 109.47333 * 299.99429 * 5 3 2 32 32 H 1.09002 * 109.47152 * 59.99956 * 5 3 2 33 33 H 1.08006 * 125.58658 * 180.13734 * 8 7 6 34 34 H 1.08996 * 109.47642 * 269.97462 * 10 9 8 35 35 H 1.09001 * 109.47305 * 29.97645 * 10 9 8 36 36 H 1.09003 * 109.47288 * 149.97282 * 10 9 8 37 37 H 1.09001 * 109.47060 * 180.02562 * 13 2 1 38 38 H 1.09001 * 109.46832 * 299.99854 * 14 13 2 39 39 H 1.08996 * 109.46952 * 59.99873 * 14 13 2 40 40 H 1.09001 * 109.46997 * 299.99574 * 15 14 13 41 41 H 1.09004 * 109.47552 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.47194 * 59.99866 * 16 15 14 43 43 H 0.96994 * 120.00546 * 94.99704 * 17 16 15 44 44 H 0.97000 * 120.00229 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.47420 * 299.99415 * 26 16 15 46 46 H 1.09004 * 109.46832 * 179.97438 * 26 16 15 47 47 H 1.08992 * 109.47346 * 180.02562 * 27 26 16 48 48 H 1.09001 * 109.47364 * 59.99212 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4722 0.0006 6 7 2.3373 3.5858 0.0011 7 7 2.8725 4.2208 1.1303 8 6 3.6750 5.1521 0.7263 9 7 3.6850 5.1637 -0.6471 10 6 4.4628 6.0737 -1.4915 11 6 2.8570 4.1942 -1.0855 12 8 2.6218 3.9180 -2.2483 13 6 2.1975 -1.2688 -0.0006 14 6 1.8279 -2.0705 -1.2501 15 6 2.5924 -3.3958 -1.2504 16 6 2.2223 -4.1984 -0.0015 17 7 2.9548 -5.4671 -0.0014 18 6 2.4560 -6.5456 -0.6821 19 1 1.5226 -6.4610 -1.2186 20 6 3.1498 -7.7480 -0.6817 21 7 2.6702 -8.7847 -1.3355 22 14 4.7640 -7.8945 0.2469 23 1 4.4957 -8.3346 1.6396 24 1 5.6346 -8.8904 -0.4280 25 1 5.4450 -6.5750 0.2672 26 6 2.5919 -3.3965 1.2481 27 6 1.8273 -2.0713 1.2484 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3633 -0.8901 -0.5138 31 1 0.7584 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 4.2408 5.8147 1.3645 34 1 3.8745 6.9669 -1.7014 35 1 5.3794 6.3559 -0.9734 36 1 4.7136 5.5755 -2.4280 37 1 3.2692 -1.0696 0.0000 38 1 0.7562 -2.2697 -1.2502 39 1 2.0912 -1.4986 -2.1398 40 1 3.6641 -3.1970 -1.2501 41 1 2.3288 -3.9673 -2.1404 42 1 1.1506 -4.3972 -0.0017 43 1 3.7930 -5.5432 0.4807 44 1 3.1548 -9.6250 -1.3349 45 1 3.6636 -3.1977 1.2484 46 1 2.3278 -3.9681 2.1379 47 1 2.0910 -1.4999 2.1383 48 1 0.7556 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963599436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:48 Heat of formation + Delta-G solvation = 2.979526 kcal Electronic energy + Delta-G solvation = -29588.842501 eV Core-core repulsion = 25487.499242 eV Total energy + Delta-G solvation = -4101.343260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.43257 -41.32438 -39.44914 -38.44595 -36.94592 -36.23142 -35.19059 -33.30864 -32.69079 -31.75264 -30.16684 -29.01054 -27.88009 -27.45787 -25.28615 -23.84638 -23.62673 -22.76885 -22.18499 -21.05916 -20.31470 -19.55848 -18.77556 -18.41320 -17.59567 -17.27803 -17.15151 -16.87185 -16.65909 -16.29771 -16.18138 -15.52613 -15.29090 -15.09585 -14.84381 -14.58057 -14.38913 -14.30860 -14.20128 -13.66909 -13.59639 -13.50182 -13.42116 -13.35300 -13.14888 -13.07668 -12.92591 -12.88844 -12.43149 -12.16191 -12.09202 -11.98471 -11.79794 -11.55706 -11.50483 -11.44810 -11.18603 -10.91246 -10.71717 -9.68395 -9.66239 -9.31017 -8.02319 -5.34907 0.64708 1.07122 1.36827 1.39289 1.44141 1.46456 1.52559 1.93174 2.27804 2.47806 3.28384 3.37056 3.43816 3.55483 3.73636 3.83127 4.02631 4.07117 4.09171 4.15803 4.24578 4.29161 4.33367 4.38743 4.49191 4.51344 4.54173 4.58231 4.73634 4.77561 4.78203 4.86423 4.87761 4.96268 5.00976 5.09223 5.11001 5.18792 5.21680 5.45265 5.49892 5.55977 5.66652 5.78429 6.22416 6.29002 6.58757 6.89003 7.02797 7.08188 7.85561 8.03781 9.19165 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.002165 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.356472 B =12928.797844 C =13179.968098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.601 5.601 3 C 0.491 3.509 4 O -0.583 6.583 5 C 0.145 3.855 6 N -0.447 5.447 7 N -0.310 5.310 8 C 0.278 3.722 9 N -0.560 5.560 10 C 0.092 3.908 11 C 0.630 3.370 12 O -0.601 6.601 13 C 0.145 3.855 14 C -0.110 4.110 15 C -0.125 4.125 16 C 0.177 3.823 17 N -0.754 5.754 18 C -0.224 4.224 19 H 0.059 0.941 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.298 1.298 25 H -0.258 1.258 26 C -0.117 4.117 27 C -0.104 4.104 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.289 0.711 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.363 0.637 44 H 0.257 0.743 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 36.877 8.271 37.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.333 5.333 3 C 0.278 3.722 4 O -0.462 6.462 5 C 0.021 3.979 6 N -0.266 5.266 7 N -0.131 5.131 8 C -0.020 4.020 9 N -0.287 5.287 10 C -0.049 4.049 11 C 0.329 3.671 12 O -0.478 6.478 13 C 0.042 3.958 14 C -0.149 4.149 15 C -0.166 4.166 16 C 0.070 3.930 17 N -0.397 5.397 18 C -0.355 4.355 19 H 0.077 0.923 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.781 3.219 23 H -0.202 1.202 24 H -0.225 1.225 25 H -0.182 1.182 26 C -0.156 4.156 27 C -0.143 4.143 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.304 0.696 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.196 0.804 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.110 36.065 8.129 37.101 hybrid contribution 1.506 -0.797 -0.795 1.880 sum -1.605 35.268 7.335 36.058 Atomic orbital electron populations 1.22275 0.76525 1.05244 1.04351 1.47976 1.08789 1.04489 1.72033 1.21515 0.88113 0.86863 0.75701 1.90694 1.16232 1.87729 1.51594 1.21501 0.88558 0.79102 1.08769 1.48430 1.43000 1.31575 1.03556 1.76989 1.15589 1.10438 1.10058 1.27119 0.95901 0.96576 0.82391 1.46131 1.41404 1.32504 1.08693 1.22165 0.96517 0.91584 0.94592 1.17086 0.82355 0.82371 0.85303 1.91030 1.68253 1.71462 1.17072 1.20987 0.96682 0.82517 0.95657 1.21726 1.01497 0.94807 0.96870 1.22020 0.99315 0.95434 0.99830 1.20448 0.95420 0.83893 0.93275 1.42873 1.25780 1.09155 1.61874 1.19039 1.04237 0.89318 1.22907 0.92261 1.25480 1.02567 0.95708 1.02069 1.69874 1.41908 1.02700 1.49003 0.85436 0.80293 0.77715 0.78488 1.20191 1.22491 1.18249 1.21709 1.00206 0.95836 0.97841 1.21674 1.01657 0.94261 0.96680 0.89544 0.88649 0.89688 0.84426 0.82217 0.69582 0.88940 0.85253 0.91575 0.91406 0.89668 0.92855 0.93826 0.93794 0.92924 0.80414 0.93461 0.92718 0.90801 0.90854 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 9.30 127.77 1.19 1.81 16 2 N -0.60 -12.49 2.76 -822.58 -2.27 -14.76 16 3 C 0.49 12.44 7.74 87.66 0.68 13.12 16 4 O -0.58 -21.00 15.76 -3.01 -0.05 -21.05 16 5 C 0.15 2.58 5.42 85.63 0.46 3.04 16 6 N -0.45 -10.08 3.11 -481.79 -1.50 -11.58 16 7 N -0.31 -5.59 12.53 -59.42 -0.74 -6.34 16 8 C 0.28 2.75 12.66 179.83 2.28 5.02 16 9 N -0.56 -8.50 3.14 -683.69 -2.15 -10.65 16 10 C 0.09 0.61 11.05 127.77 1.41 2.03 16 11 C 0.63 16.17 8.60 178.99 1.54 17.71 16 12 O -0.60 -20.18 17.71 -4.69 -0.08 -20.27 16 13 C 0.15 3.77 2.52 44.99 0.11 3.88 16 14 C -0.11 -3.04 5.18 30.59 0.16 -2.88 16 15 C -0.13 -4.48 5.50 30.59 0.17 -4.31 16 16 C 0.18 6.61 2.77 44.99 0.12 6.74 16 17 N -0.75 -35.70 4.92 -322.94 -1.59 -37.29 16 18 C -0.22 -12.87 10.41 84.03 0.87 -11.99 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 21 N -0.98 -63.95 13.97 21.65 0.30 -63.64 16 22 Si 0.95 46.77 27.74 68.60 1.90 48.67 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 25 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16 26 C -0.12 -3.47 5.39 30.59 0.16 -3.31 16 27 C -0.10 -2.40 5.20 30.59 0.16 -2.24 16 28 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.57 6.44 -2.39 -0.02 0.55 16 30 H 0.08 0.93 6.43 -2.38 -0.02 0.92 16 31 H 0.14 1.98 7.37 -2.39 -0.02 1.97 16 32 H 0.16 1.58 8.11 -2.39 -0.02 1.56 16 33 H 0.29 -1.12 8.06 -2.91 -0.02 -1.15 16 34 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 37 H 0.07 2.23 6.90 -2.39 -0.02 2.22 16 38 H 0.08 2.01 6.66 -2.39 -0.02 1.99 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 43 H 0.36 16.74 5.66 -92.71 -0.52 16.21 16 44 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.09 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -95.01 388.72 4.00 -91.01 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.39 Total: 20.84 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 9.79 Total: 25.06 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -7.95 Total: -144.26 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.13 Total: -41.32 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.67 kcal Total: -95.01 4.00 -91.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963599436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.988 kcal (2) G-P(sol) polarization free energy of solvation -95.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds