Wall clock time and date at job start Tue Mar 31 2020 21:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.59139 * 125.00440 * 5 4 3 7 7 C 1.36600 * 106.83782 * 179.97438 * 6 5 4 8 8 C 1.47527 * 125.77152 * 180.02562 * 7 6 5 9 9 O 1.21597 * 119.99676 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00193 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99961 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47637 * 325.00970 * 11 10 8 13 13 C 1.53001 * 109.46882 * 85.00791 * 11 10 8 14 14 C 1.53001 * 109.47349 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46990 * 300.00004 * 14 13 11 16 16 C 1.53002 * 109.47335 * 59.99544 * 15 14 13 17 17 H 1.09005 * 109.46799 * 60.00638 * 16 15 14 18 18 N 1.46507 * 109.47160 * 179.97438 * 16 15 14 19 19 C 1.36934 * 120.00110 * 275.00352 * 18 16 15 20 20 H 1.07996 * 119.99944 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99898 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99924 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46750 * 90.00200 * 23 21 19 25 25 H 1.48494 * 109.47223 * 209.99994 * 23 21 19 26 26 H 1.48497 * 109.47343 * 330.00310 * 23 21 19 27 27 C 1.53001 * 109.47453 * 300.00172 * 16 15 14 28 28 N 1.34403 * 108.45910 * 0.02562 * 7 6 5 29 29 N 1.28759 * 109.52055 * 359.74224 * 28 7 6 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 34 34 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 35 35 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 36 36 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 37 37 H 1.07995 * 126.58202 * 359.97408 * 6 5 4 38 38 H 0.97001 * 119.99713 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.46703 * 299.99737 * 13 11 10 40 40 H 1.08993 * 109.47411 * 59.99966 * 13 11 10 41 41 H 1.09007 * 109.46989 * 59.99465 * 14 13 11 42 42 H 1.09000 * 109.47339 * 179.97438 * 14 13 11 43 43 H 1.09000 * 109.47401 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.47265 * 299.99686 * 15 14 13 45 45 H 0.96995 * 119.99594 * 95.00354 * 18 16 15 46 46 H 0.96997 * 120.00120 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.46857 * 299.99952 * 27 16 15 48 48 H 1.08999 * 109.47193 * 179.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0256 3.0043 0.8866 7 6 5.3067 4.2865 0.5088 8 6 6.2397 5.2021 1.1926 9 8 6.8373 4.8318 2.1847 10 7 6.4306 6.4487 0.7170 11 6 7.3566 7.3580 1.3964 12 1 7.3151 7.1827 2.4714 13 6 8.7795 7.1064 0.8933 14 6 9.7467 8.0565 1.6024 15 6 9.3493 9.5038 1.3055 16 6 7.9264 9.7555 1.8085 17 1 7.8849 9.5807 2.8836 18 7 7.5461 11.1416 1.5247 19 6 7.8906 12.1386 2.3979 20 1 8.4422 11.9031 3.2959 21 6 7.5298 13.4518 2.1292 22 7 6.8562 13.7386 1.0355 23 14 7.9990 14.8118 3.3207 24 1 9.3267 15.3615 2.9462 25 1 6.9820 15.8923 3.2641 26 1 8.0616 14.2626 4.6990 27 6 6.9592 8.8054 1.0994 28 7 4.5896 4.5730 -0.5913 29 7 3.8847 3.5483 -0.9243 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.8574 0.6437 0.8891 36 1 3.8567 0.6441 -0.8909 37 1 5.4402 2.4771 1.7330 38 1 5.9542 6.7439 -0.0747 39 1 9.0624 6.0752 1.1045 40 1 8.8212 7.2818 -0.1816 41 1 9.7051 7.8816 2.6775 42 1 10.7604 7.8769 1.2443 43 1 10.0380 10.1808 1.8109 44 1 9.3908 9.6788 0.2304 45 1 7.0503 11.3530 0.7183 46 1 6.6037 14.6561 0.8479 47 1 7.0008 8.9803 0.0244 48 1 5.9456 8.9844 1.4581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981080594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:27 Heat of formation + Delta-G solvation = 15.856406 kcal Electronic energy + Delta-G solvation = -28302.672626 eV Core-core repulsion = 24201.887750 eV Total energy + Delta-G solvation = -4100.784876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.56405 -39.76224 -38.69356 -37.84088 -35.40065 -34.63993 -33.28493 -31.54444 -31.09328 -30.54615 -29.09479 -27.72974 -27.05160 -24.59210 -24.16631 -23.58257 -22.21140 -21.90846 -21.19341 -20.25331 -19.46799 -18.39353 -17.34713 -17.06854 -16.88853 -16.35550 -16.20549 -16.04454 -15.55158 -14.92289 -14.85525 -14.76213 -14.36808 -14.16661 -13.87285 -13.71313 -13.47839 -13.11420 -12.94612 -12.73158 -12.62388 -12.29174 -12.10701 -12.05023 -12.02653 -11.56043 -10.96622 -10.90290 -10.84619 -10.81338 -10.67608 -10.43228 -10.36835 -10.30649 -10.15761 -10.11218 -9.70961 -9.64924 -9.56915 -8.93949 -8.82398 -6.92371 -5.73360 -3.01812 0.75163 1.44825 1.47125 3.03865 3.09175 3.19036 3.46094 3.51412 3.52873 3.85277 3.93675 4.11815 4.40804 4.46048 4.59018 4.61256 4.67079 4.70428 4.78523 4.91512 5.02081 5.07052 5.08560 5.13796 5.37087 5.46152 5.54537 5.65854 5.73762 5.79513 5.88620 5.92864 6.02047 6.07504 6.18600 6.32729 6.34855 6.37898 6.56370 6.58297 6.66895 6.77651 7.01273 7.17120 7.41575 7.68165 7.74119 8.15279 8.45352 9.56495 10.14378 10.49175 11.49365 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.001813 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.745412 B =15441.024469 C =16311.981150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.363 5.363 6 C 0.098 3.902 7 C -0.097 4.097 8 C 0.603 3.397 9 O -0.540 6.540 10 N -0.706 5.706 11 C 0.149 3.851 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.184 3.816 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.130 4.130 28 N -0.199 5.199 29 N -0.064 5.064 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.207 0.793 38 H 0.407 0.593 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.066 0.934 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 -30.196 -2.950 31.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.149 5.149 6 C -0.059 4.059 7 C -0.237 4.237 8 C 0.387 3.613 9 O -0.417 6.417 10 N -0.355 5.355 11 C 0.045 3.955 12 H 0.108 0.892 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.364 5.364 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.169 4.169 28 N -0.073 5.073 29 N -0.044 5.044 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.224 0.776 38 H 0.243 0.757 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.475 -30.124 -3.334 31.471 hybrid contribution 0.085 0.800 0.736 1.091 sum -8.390 -29.324 -2.597 30.611 Atomic orbital electron populations 1.22820 0.79523 1.03344 1.00625 1.87776 1.20906 1.26399 1.95647 1.22630 0.91833 0.85863 1.02536 1.21695 0.93271 0.77957 1.06659 1.50294 1.30683 1.13621 1.20351 1.23414 0.91881 0.94926 0.95632 1.21592 1.07201 0.95620 0.99243 1.16729 0.80186 0.81372 0.83032 1.90812 1.49221 1.76032 1.25619 1.45971 1.45198 1.12610 1.31704 1.21098 0.88008 0.88586 0.97780 0.89213 1.21891 0.94405 0.99540 1.00467 1.21484 0.97814 0.95760 1.00222 1.22292 1.00065 0.94071 1.01308 1.20101 0.90612 0.85087 0.96893 0.93337 1.42402 1.66844 1.00593 1.26607 1.19251 1.29023 0.87047 1.01474 0.91137 1.24731 1.01107 0.97313 0.97863 1.69659 1.43903 1.18535 1.26088 0.86207 0.77550 0.82142 0.80410 1.21777 1.21854 1.20778 1.22099 1.00884 0.92166 1.01746 1.74671 1.03714 1.18791 1.10129 1.82012 1.20355 0.90472 1.11578 0.93476 0.93617 0.88964 0.91179 0.92219 0.86655 0.87279 0.77625 0.75735 0.92111 0.91940 0.92149 0.92505 0.91910 0.92627 0.78306 0.93577 0.91544 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.26 10.70 -35.23 -0.38 -2.64 16 3 C 0.05 0.25 6.15 37.16 0.23 0.48 16 4 C 0.13 0.54 6.91 -4.04 -0.03 0.52 16 5 N -0.36 -2.80 3.69 -61.06 -0.23 -3.02 16 6 C 0.10 0.81 11.27 -16.83 -0.19 0.62 16 7 C -0.10 -1.12 6.99 -83.55 -0.58 -1.70 16 8 C 0.60 8.10 7.78 -12.48 -0.10 8.01 16 9 O -0.54 -8.45 16.53 5.28 0.09 -8.36 16 10 N -0.71 -9.23 5.07 -54.85 -0.28 -9.50 16 11 C 0.15 2.14 2.45 -67.93 -0.17 1.98 16 12 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 13 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 14 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 15 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 16 C 0.18 3.59 2.77 -67.93 -0.19 3.40 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -17.99 5.12 -53.42 -0.27 -18.26 16 19 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 23 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 C -0.13 -2.12 4.86 -26.73 -0.13 -2.25 16 28 N -0.20 -2.44 12.04 32.85 0.40 -2.04 16 29 N -0.06 -0.70 13.65 60.35 0.82 0.13 16 30 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.12 0.23 8.08 -51.93 -0.42 -0.19 16 36 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.41 4.91 8.29 -40.82 -0.34 4.57 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -33.89 401.29 -6.62 -40.51 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.78 Total: 8.32 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -0.74 Total: -1.15 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 1.17 Total: -60.21 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.29 Total: -10.99 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.89 -6.62 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981080594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.365 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds