Wall clock time and date at job start Tue Mar 31 2020 21:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46892 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.59139 * 125.00440 * 5 4 3 7 7 C 1.36600 * 106.83782 * 179.97438 * 6 5 4 8 8 C 1.47527 * 125.77152 * 180.02562 * 7 6 5 9 9 O 1.21597 * 119.99676 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00193 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99961 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.47637 * 325.00970 * 11 10 8 13 13 C 1.53001 * 109.46882 * 85.00791 * 11 10 8 14 14 C 1.53001 * 109.47349 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46990 * 300.00004 * 14 13 11 16 16 C 1.53002 * 109.47335 * 59.99544 * 15 14 13 17 17 H 1.09005 * 109.46799 * 60.00638 * 16 15 14 18 18 N 1.46507 * 109.47160 * 179.97438 * 16 15 14 19 19 C 1.36934 * 120.00110 * 275.00352 * 18 16 15 20 20 H 1.07996 * 119.99944 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99898 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99924 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46750 * 90.00200 * 23 21 19 25 25 H 1.48494 * 109.47223 * 209.99994 * 23 21 19 26 26 H 1.48497 * 109.47343 * 330.00310 * 23 21 19 27 27 C 1.53001 * 109.47453 * 300.00172 * 16 15 14 28 28 N 1.34403 * 108.45910 * 0.02562 * 7 6 5 29 29 N 1.28759 * 109.52055 * 359.74224 * 28 7 6 30 30 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 31 31 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 34 34 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 35 35 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 36 36 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 37 37 H 1.07995 * 126.58202 * 359.97408 * 6 5 4 38 38 H 0.97001 * 119.99713 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.46703 * 299.99737 * 13 11 10 40 40 H 1.08993 * 109.47411 * 59.99966 * 13 11 10 41 41 H 1.09007 * 109.46989 * 59.99465 * 14 13 11 42 42 H 1.09000 * 109.47339 * 179.97438 * 14 13 11 43 43 H 1.09000 * 109.47401 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.47265 * 299.99686 * 15 14 13 45 45 H 0.96995 * 119.99594 * 95.00354 * 18 16 15 46 46 H 0.96997 * 120.00120 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.46857 * 299.99952 * 27 16 15 48 48 H 1.08999 * 109.47193 * 179.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0256 3.0043 0.8866 7 6 5.3067 4.2865 0.5088 8 6 6.2397 5.2021 1.1926 9 8 6.8373 4.8318 2.1847 10 7 6.4306 6.4487 0.7170 11 6 7.3566 7.3580 1.3964 12 1 7.3151 7.1827 2.4714 13 6 8.7795 7.1064 0.8933 14 6 9.7467 8.0565 1.6024 15 6 9.3493 9.5038 1.3055 16 6 7.9264 9.7555 1.8085 17 1 7.8849 9.5807 2.8836 18 7 7.5461 11.1416 1.5247 19 6 7.8906 12.1386 2.3979 20 1 8.4422 11.9031 3.2959 21 6 7.5298 13.4518 2.1292 22 7 6.8562 13.7386 1.0355 23 14 7.9990 14.8118 3.3207 24 1 9.3267 15.3615 2.9462 25 1 6.9820 15.8923 3.2641 26 1 8.0616 14.2626 4.6990 27 6 6.9592 8.8054 1.0994 28 7 4.5896 4.5730 -0.5913 29 7 3.8847 3.5483 -0.9243 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.8574 0.6437 0.8891 36 1 3.8567 0.6441 -0.8909 37 1 5.4402 2.4771 1.7330 38 1 5.9542 6.7439 -0.0747 39 1 9.0624 6.0752 1.1045 40 1 8.8212 7.2818 -0.1816 41 1 9.7051 7.8816 2.6775 42 1 10.7604 7.8769 1.2443 43 1 10.0380 10.1808 1.8109 44 1 9.3908 9.6788 0.2304 45 1 7.0503 11.3530 0.7183 46 1 6.6037 14.6561 0.8479 47 1 7.0008 8.9803 0.0244 48 1 5.9456 8.9844 1.4581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981080594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:26 Heat of formation + Delta-G solvation = -9.297285 kcal Electronic energy + Delta-G solvation = -28303.763372 eV Core-core repulsion = 24201.887750 eV Total energy + Delta-G solvation = -4101.875622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.30519 -40.88872 -39.21277 -39.03556 -36.24568 -35.97439 -34.76939 -32.92824 -32.27322 -31.27448 -30.30398 -29.30347 -27.41654 -25.71722 -25.13088 -24.94600 -23.18224 -22.83772 -22.44829 -21.33365 -20.79475 -19.40819 -18.86885 -17.84012 -17.54060 -17.40394 -16.90326 -16.76971 -16.41050 -16.14288 -15.92250 -15.66519 -15.52596 -15.36464 -15.12371 -14.96774 -14.71277 -14.57748 -14.16656 -13.56557 -13.49236 -13.38079 -13.23430 -12.89684 -12.80684 -12.78539 -12.43848 -12.25274 -12.17348 -12.13730 -12.01114 -11.95155 -11.62430 -11.55615 -11.43966 -11.36191 -11.02610 -10.84758 -10.80652 -10.45039 -10.01531 -8.97802 -7.91752 -5.19664 0.08159 0.58015 0.89947 1.48532 1.49826 1.58161 2.07866 2.22242 2.58429 2.65380 3.14566 3.41519 3.44189 3.64983 3.73582 3.77721 3.89286 3.92672 4.07548 4.08526 4.18266 4.28038 4.34300 4.42781 4.43631 4.47676 4.53912 4.57324 4.59010 4.60783 4.69780 4.77921 4.79439 4.83809 5.05615 5.14454 5.20533 5.26027 5.33356 5.38474 5.46475 5.53037 5.55964 5.68942 5.97435 6.30588 6.42667 6.85279 7.12711 7.36781 8.13145 8.36563 9.31733 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.001813 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.745412 B =15441.024469 C =16311.981150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.120 3.880 7 C -0.123 4.123 8 C 0.606 3.394 9 O -0.564 6.564 10 N -0.704 5.704 11 C 0.160 3.840 12 H 0.079 0.921 13 C -0.117 4.117 14 C -0.105 4.105 15 C -0.127 4.127 16 C 0.177 3.823 17 H 0.040 0.960 18 N -0.736 5.736 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.970 5.970 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.270 1.270 27 C -0.117 4.117 28 N -0.221 5.221 29 N -0.086 5.086 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.242 0.758 38 H 0.412 0.588 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.070 0.930 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 -32.667 -2.239 33.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.026 4.026 4 C 0.001 3.999 5 N -0.136 5.136 6 C -0.038 4.038 7 C -0.263 4.263 8 C 0.391 3.609 9 O -0.443 6.443 10 N -0.353 5.353 11 C 0.055 3.945 12 H 0.097 0.903 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.069 3.931 17 H 0.059 0.941 18 N -0.376 5.376 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.799 3.201 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.156 4.156 28 N -0.095 5.095 29 N -0.066 5.066 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.139 0.861 37 H 0.258 0.742 38 H 0.248 0.752 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.204 0.796 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.055 -32.656 -2.630 33.737 hybrid contribution -0.108 1.412 0.525 1.510 sum -8.163 -31.244 -2.105 32.361 Atomic orbital electron populations 1.22981 0.78644 1.04361 1.00958 1.87750 1.21949 1.26548 1.95687 1.22570 0.92417 0.85684 1.01953 1.22042 0.92615 0.76353 1.08854 1.50477 1.29928 1.13991 1.19165 1.23896 0.90534 0.93764 0.95559 1.21470 1.08120 0.96705 1.00000 1.16913 0.80011 0.81318 0.82633 1.90792 1.50336 1.76496 1.26660 1.45871 1.45057 1.12595 1.31754 1.20849 0.88862 0.87411 0.97356 0.90279 1.21825 0.93391 0.99603 1.00713 1.21410 0.99038 0.93246 1.00660 1.22100 0.97965 0.96131 1.00527 1.20320 0.92564 0.83303 0.96936 0.94150 1.42593 1.66880 1.02298 1.25816 1.19617 1.27739 0.87881 1.01628 0.90746 1.25513 1.01997 0.99632 0.99703 1.69812 1.45731 1.18520 1.27988 0.85186 0.76882 0.79107 0.78894 1.21491 1.22356 1.19533 1.21891 0.99374 0.92853 1.01443 1.74645 1.04316 1.19754 1.10774 1.81946 1.20776 0.91123 1.12785 0.93312 0.93158 0.87677 0.92359 0.92318 0.83435 0.86149 0.74229 0.75155 0.91391 0.91242 0.91837 0.90486 0.93831 0.93092 0.79571 0.94158 0.91094 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.40 -3.98 10.70 -148.98 -1.59 -5.57 16 3 C 0.05 0.45 6.15 71.99 0.44 0.89 16 4 C 0.12 0.72 6.91 86.38 0.60 1.32 16 5 N -0.35 -4.62 3.69 -347.10 -1.28 -5.90 16 6 C 0.12 1.67 11.27 83.85 0.95 2.62 16 7 C -0.12 -2.67 6.99 40.82 0.29 -2.38 16 8 C 0.61 15.61 7.78 86.69 0.67 16.28 16 9 O -0.56 -16.84 16.53 -4.02 -0.07 -16.90 16 10 N -0.70 -17.86 5.07 -445.70 -2.26 -20.12 16 11 C 0.16 4.45 2.45 44.99 0.11 4.56 16 12 H 0.08 2.42 7.58 -2.39 -0.02 2.40 16 13 C -0.12 -2.99 5.49 30.59 0.17 -2.82 16 14 C -0.10 -2.83 5.92 30.59 0.18 -2.65 16 15 C -0.13 -4.44 5.50 30.59 0.17 -4.27 16 16 C 0.18 6.98 2.77 44.99 0.12 7.11 16 17 H 0.04 1.65 8.08 -2.38 -0.02 1.63 16 18 N -0.74 -37.24 5.12 -322.92 -1.65 -38.89 16 19 C -0.24 -13.24 9.93 84.03 0.83 -12.41 16 20 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 21 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 22 N -0.97 -59.82 13.06 21.65 0.28 -59.53 16 23 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 27 C -0.12 -3.79 4.86 30.60 0.15 -3.64 16 28 N -0.22 -5.28 12.04 -49.99 -0.60 -5.88 16 29 N -0.09 -1.80 13.65 37.02 0.51 -1.29 16 30 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.15 -0.01 8.08 -2.39 -0.02 -0.03 16 36 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.24 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.41 9.76 8.29 -92.71 -0.77 8.99 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 46 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -73.63 401.29 1.24 -72.40 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.52 Total: 30.93 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.40 Total: 2.06 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -5.01 Total: -131.62 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.66 Total: -22.47 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -73.63 1.24 -72.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981080594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.101 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds