Wall clock time and date at job start Tue Mar 31 2020 21:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00147 * 2 1 4 4 C 1.52997 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47133 * 179.97438 * 4 3 2 6 6 C 1.34819 * 126.59486 * 125.00487 * 5 4 3 7 7 C 1.36594 * 106.84053 * 179.97438 * 6 5 4 8 8 C 1.47526 * 125.76846 * 179.97438 * 7 6 5 9 9 O 1.21587 * 120.00160 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99682 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99793 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 34.99824 * 11 10 8 13 13 C 1.53000 * 109.47023 * 274.99565 * 11 10 8 14 14 C 1.53002 * 109.47233 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46817 * 60.00194 * 14 13 11 16 16 C 1.53005 * 109.47452 * 300.00239 * 15 14 13 17 17 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 18 18 N 1.46496 * 109.47414 * 180.02562 * 16 15 14 19 19 C 1.36936 * 119.99988 * 84.99756 * 18 16 15 20 20 H 1.08001 * 120.00514 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99902 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47017 * 59.99831 * 23 21 19 25 25 H 1.48504 * 109.47007 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46628 * 299.99455 * 23 21 19 27 27 C 1.52997 * 109.47007 * 154.99772 * 11 10 8 28 28 N 1.34407 * 108.45896 * 0.23201 * 7 6 5 29 29 N 1.28758 * 109.51712 * 359.59587 * 28 7 6 30 30 H 1.08996 * 109.47246 * 60.00270 * 1 2 3 31 31 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47377 * 299.99701 * 1 2 3 33 33 H 1.09002 * 109.47106 * 59.99948 * 3 2 1 34 34 H 1.09007 * 109.46575 * 300.00076 * 3 2 1 35 35 H 1.09002 * 109.47204 * 59.99784 * 4 3 2 36 36 H 1.09001 * 109.47331 * 300.00191 * 4 3 2 37 37 H 1.08002 * 126.57989 * 359.93564 * 6 5 4 38 38 H 0.97004 * 119.99983 * 359.97438 * 10 8 7 39 39 H 1.08992 * 109.47399 * 300.00063 * 13 11 10 40 40 H 1.09004 * 109.46724 * 60.00549 * 13 11 10 41 41 H 1.08993 * 109.47662 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.47075 * 300.00932 * 14 13 11 43 43 H 1.09002 * 109.47153 * 60.00231 * 15 14 13 44 44 H 1.09001 * 109.47289 * 180.02562 * 15 14 13 45 45 H 0.96994 * 120.00122 * 265.00254 * 18 16 15 46 46 H 0.97001 * 119.99978 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47853 * 300.00060 * 27 11 10 48 48 H 1.09002 * 109.47153 * 60.00089 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 -0.0013 6 6 5.0257 3.0049 0.8848 7 6 5.3069 4.2868 0.5059 8 6 6.2392 5.2032 1.1894 9 8 6.8353 4.8344 2.1829 10 7 6.4302 6.4493 0.7126 11 6 7.3556 7.3596 1.3918 12 1 8.1957 6.7918 1.7918 13 6 6.6271 8.0672 2.5361 14 6 7.5937 9.0175 3.2458 15 6 8.1100 10.0575 2.2494 16 6 8.8385 9.3499 1.1050 17 1 9.6783 8.7818 1.5051 18 7 9.3333 10.3458 0.1513 19 6 10.5391 10.9586 0.3652 20 1 11.1251 10.7081 1.2371 21 6 11.0077 11.9026 -0.5383 22 7 10.2933 12.2083 -1.6006 23 14 12.6529 12.7381 -0.2470 24 1 13.7279 11.7143 -0.2078 25 1 12.9230 13.6970 -1.3483 26 1 12.6158 13.4667 1.0464 27 6 7.8713 8.3996 0.3951 28 7 4.5863 4.5738 -0.5918 29 7 3.8815 3.5488 -0.9239 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8463 -0.8901 35 1 3.8567 0.6439 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 5.4400 2.4787 1.7321 38 1 5.9549 6.7434 -0.0802 39 1 5.7871 8.6349 2.1361 40 1 6.2597 7.3263 3.2461 41 1 7.0749 9.5213 4.0613 42 1 8.4336 8.4494 3.6458 43 1 7.2702 10.6256 1.8493 44 1 8.7990 10.7342 2.7549 45 1 8.8068 10.5711 -0.6315 46 1 10.6210 12.8677 -2.2321 47 1 8.3903 7.8956 -0.4202 48 1 7.0312 8.9673 -0.0049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981080595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:32 Heat of formation + Delta-G solvation = 16.008911 kcal Electronic energy + Delta-G solvation = -28296.955531 eV Core-core repulsion = 24196.177268 eV Total energy + Delta-G solvation = -4100.778263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.56423 -39.76212 -38.70538 -37.83965 -35.40315 -34.63756 -33.28234 -31.54579 -31.08963 -30.54978 -29.09402 -27.72733 -27.06282 -24.59937 -24.16559 -23.57817 -22.21195 -21.90762 -21.19217 -20.25175 -19.46880 -18.39385 -17.35497 -17.07384 -16.88830 -16.35324 -16.21025 -16.05295 -15.54643 -14.98987 -14.88890 -14.61656 -14.34667 -14.27445 -13.87560 -13.68378 -13.46599 -13.10077 -12.99286 -12.69996 -12.63914 -12.29687 -12.11160 -12.05791 -12.02247 -11.56137 -10.95935 -10.90288 -10.83387 -10.81234 -10.67537 -10.44367 -10.37203 -10.30210 -10.17018 -10.12191 -9.70829 -9.64969 -9.56407 -8.93697 -8.81767 -6.92022 -5.72774 -3.01295 0.75204 1.44488 1.47313 3.03084 3.09149 3.19091 3.47143 3.51521 3.52381 3.84992 3.93691 4.10911 4.40469 4.45705 4.58680 4.61687 4.66435 4.68894 4.77441 4.90533 5.02065 5.05678 5.08234 5.13776 5.37036 5.46160 5.54752 5.65926 5.73830 5.79576 5.88582 5.92776 6.02133 6.07545 6.18488 6.31716 6.34851 6.37979 6.56301 6.58428 6.66944 6.77796 7.01442 7.17295 7.41606 7.68187 7.74019 8.15329 8.45912 9.56964 10.14857 10.49638 11.49844 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026505 B = 0.001746 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.134137 B =16035.506305 C =16526.143061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.363 5.363 6 C 0.098 3.902 7 C -0.097 4.097 8 C 0.603 3.397 9 O -0.540 6.540 10 N -0.706 5.706 11 C 0.149 3.851 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.184 3.816 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.130 4.130 28 N -0.199 5.199 29 N -0.064 5.064 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.207 0.793 38 H 0.407 0.593 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.069 0.931 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.763 -25.021 5.858 32.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.149 5.149 6 C -0.059 4.059 7 C -0.237 4.237 8 C 0.387 3.613 9 O -0.417 6.417 10 N -0.355 5.355 11 C 0.045 3.955 12 H 0.108 0.892 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.364 5.364 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.169 4.169 28 N -0.073 5.073 29 N -0.044 5.044 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.224 0.776 38 H 0.243 0.757 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.836 -25.012 5.344 32.367 hybrid contribution 0.664 0.532 0.308 0.904 sum -19.173 -24.480 5.652 31.604 Atomic orbital electron populations 1.22816 0.79547 1.03352 1.00587 1.87779 1.20884 1.26404 1.95638 1.22626 0.91856 0.85855 1.02486 1.21695 0.93234 0.77977 1.06704 1.50292 1.30676 1.13595 1.20381 1.23415 0.91888 0.94905 0.95650 1.21592 1.07156 0.95663 0.99244 1.16727 0.80277 0.81212 0.83098 1.90809 1.48936 1.76368 1.25561 1.45974 1.45497 1.12555 1.31465 1.21097 0.91600 0.89900 0.92878 0.89205 1.21891 0.98764 0.98402 0.97235 1.21483 0.98479 0.97258 0.98057 1.22295 1.00308 0.97835 0.97304 1.20107 0.93350 0.89465 0.89759 0.93335 1.42390 1.22025 1.45937 1.26079 1.19208 0.95606 1.16183 1.05894 0.91195 1.24732 0.98750 1.00151 0.97323 1.69653 1.38465 1.36561 1.13519 0.86284 0.83912 0.79146 0.76945 1.21305 1.21758 1.21304 1.22108 1.00171 0.96634 0.97988 1.74673 1.03722 1.18859 1.10050 1.82010 1.20370 0.90409 1.11628 0.93482 0.88961 0.93653 0.92268 0.91181 0.87252 0.86642 0.77624 0.75737 0.91948 0.92137 0.92518 0.92143 0.92636 0.91910 0.78302 0.93528 0.91190 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 101.05 1.11 1.23 16 2 O -0.39 -2.21 10.70 -35.23 -0.38 -2.59 16 3 C 0.05 0.25 6.14 37.16 0.23 0.48 16 4 C 0.13 0.54 6.91 -4.05 -0.03 0.51 16 5 N -0.36 -2.80 3.69 -61.07 -0.23 -3.02 16 6 C 0.10 0.81 11.27 -16.83 -0.19 0.62 16 7 C -0.10 -1.12 6.99 -83.55 -0.58 -1.70 16 8 C 0.60 8.11 7.78 -12.47 -0.10 8.01 16 9 O -0.54 -8.45 16.52 5.29 0.09 -8.36 16 10 N -0.71 -9.23 5.07 -54.85 -0.28 -9.51 16 11 C 0.15 2.14 2.45 -67.93 -0.17 1.98 16 12 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 13 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 14 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 15 C -0.14 -2.43 5.50 -26.73 -0.15 -2.57 16 16 C 0.18 3.60 2.77 -67.90 -0.19 3.41 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -18.00 5.12 -53.40 -0.27 -18.28 16 19 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 23 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C -0.13 -2.12 4.86 -26.71 -0.13 -2.25 16 28 N -0.20 -2.44 12.04 32.85 0.40 -2.04 16 29 N -0.06 -0.70 13.65 60.35 0.82 0.13 16 30 H 0.05 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.12 0.23 8.08 -51.93 -0.42 -0.19 16 37 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.41 4.91 8.29 -40.82 -0.34 4.58 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.38 10.13 7.80 -40.82 -0.32 9.81 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 401.29 15.07 6.05 6.05 Total: -1.00 -33.89 401.29 -6.62 -40.51 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.78 Total: 8.31 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.74 Total: -1.17 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 1.17 Total: -60.24 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.29 Total: -10.95 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.89 -6.62 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981080595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.521 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds