Wall clock time and date at job start Tue Mar 31 2020 21:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00147 * 2 1 4 4 C 1.52997 * 109.47425 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47133 * 179.97438 * 4 3 2 6 6 C 1.34819 * 126.59486 * 125.00487 * 5 4 3 7 7 C 1.36594 * 106.84053 * 179.97438 * 6 5 4 8 8 C 1.47526 * 125.76846 * 179.97438 * 7 6 5 9 9 O 1.21587 * 120.00160 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99682 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99793 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47092 * 34.99824 * 11 10 8 13 13 C 1.53000 * 109.47023 * 274.99565 * 11 10 8 14 14 C 1.53002 * 109.47233 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.46817 * 60.00194 * 14 13 11 16 16 C 1.53005 * 109.47452 * 300.00239 * 15 14 13 17 17 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 18 18 N 1.46496 * 109.47414 * 180.02562 * 16 15 14 19 19 C 1.36936 * 119.99988 * 84.99756 * 18 16 15 20 20 H 1.08001 * 120.00514 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99902 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99987 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47017 * 59.99831 * 23 21 19 25 25 H 1.48504 * 109.47007 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46628 * 299.99455 * 23 21 19 27 27 C 1.52997 * 109.47007 * 154.99772 * 11 10 8 28 28 N 1.34407 * 108.45896 * 0.23201 * 7 6 5 29 29 N 1.28758 * 109.51712 * 359.59587 * 28 7 6 30 30 H 1.08996 * 109.47246 * 60.00270 * 1 2 3 31 31 H 1.09003 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47377 * 299.99701 * 1 2 3 33 33 H 1.09002 * 109.47106 * 59.99948 * 3 2 1 34 34 H 1.09007 * 109.46575 * 300.00076 * 3 2 1 35 35 H 1.09002 * 109.47204 * 59.99784 * 4 3 2 36 36 H 1.09001 * 109.47331 * 300.00191 * 4 3 2 37 37 H 1.08002 * 126.57989 * 359.93564 * 6 5 4 38 38 H 0.97004 * 119.99983 * 359.97438 * 10 8 7 39 39 H 1.08992 * 109.47399 * 300.00063 * 13 11 10 40 40 H 1.09004 * 109.46724 * 60.00549 * 13 11 10 41 41 H 1.08993 * 109.47662 * 180.02562 * 14 13 11 42 42 H 1.09002 * 109.47075 * 300.00932 * 14 13 11 43 43 H 1.09002 * 109.47153 * 60.00231 * 15 14 13 44 44 H 1.09001 * 109.47289 * 180.02562 * 15 14 13 45 45 H 0.96994 * 120.00122 * 265.00254 * 18 16 15 46 46 H 0.97001 * 119.99978 * 180.02562 * 22 21 19 47 47 H 1.08996 * 109.47853 * 300.00060 * 27 11 10 48 48 H 1.09002 * 109.47153 * 60.00089 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 -0.0013 6 6 5.0257 3.0049 0.8848 7 6 5.3069 4.2868 0.5059 8 6 6.2392 5.2032 1.1894 9 8 6.8353 4.8344 2.1829 10 7 6.4302 6.4493 0.7126 11 6 7.3556 7.3596 1.3918 12 1 8.1957 6.7918 1.7918 13 6 6.6271 8.0672 2.5361 14 6 7.5937 9.0175 3.2458 15 6 8.1100 10.0575 2.2494 16 6 8.8385 9.3499 1.1050 17 1 9.6783 8.7818 1.5051 18 7 9.3333 10.3458 0.1513 19 6 10.5391 10.9586 0.3652 20 1 11.1251 10.7081 1.2371 21 6 11.0077 11.9026 -0.5383 22 7 10.2933 12.2083 -1.6006 23 14 12.6529 12.7381 -0.2470 24 1 13.7279 11.7143 -0.2078 25 1 12.9230 13.6970 -1.3483 26 1 12.6158 13.4667 1.0464 27 6 7.8713 8.3996 0.3951 28 7 4.5863 4.5738 -0.5918 29 7 3.8815 3.5488 -0.9239 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6885 1.8463 -0.8901 35 1 3.8567 0.6439 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 5.4400 2.4787 1.7321 38 1 5.9549 6.7434 -0.0802 39 1 5.7871 8.6349 2.1361 40 1 6.2597 7.3263 3.2461 41 1 7.0749 9.5213 4.0613 42 1 8.4336 8.4494 3.6458 43 1 7.2702 10.6256 1.8493 44 1 8.7990 10.7342 2.7549 45 1 8.8068 10.5711 -0.6315 46 1 10.6210 12.8677 -2.2321 47 1 8.3903 7.8956 -0.4202 48 1 7.0312 8.9673 -0.0049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981080595.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:30 Heat of formation + Delta-G solvation = -9.150409 kcal Electronic energy + Delta-G solvation = -28298.046521 eV Core-core repulsion = 24196.177268 eV Total energy + Delta-G solvation = -4101.869253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.30553 -40.88873 -39.21165 -39.03376 -36.24358 -35.97414 -34.76765 -32.92567 -32.27373 -31.27344 -30.30196 -29.30164 -27.41293 -25.71288 -25.13026 -24.94450 -23.18203 -22.83712 -22.44698 -21.33248 -20.79584 -19.40610 -18.86608 -17.84528 -17.52792 -17.40857 -16.91638 -16.73665 -16.43026 -16.12647 -15.96162 -15.64320 -15.49273 -15.36586 -15.11281 -14.95708 -14.82932 -14.47958 -14.18115 -13.58580 -13.46970 -13.38154 -13.23293 -12.88253 -12.80316 -12.77194 -12.43157 -12.26656 -12.17678 -12.14684 -12.02527 -11.94479 -11.61993 -11.55717 -11.43912 -11.36200 -11.02621 -10.83728 -10.80109 -10.45089 -10.01535 -8.97527 -7.91265 -5.19260 0.08199 0.57987 0.89876 1.48675 1.51426 1.57324 2.07808 2.22273 2.58882 2.65783 3.14561 3.41803 3.44321 3.65096 3.73758 3.77713 3.89305 3.92661 4.07521 4.08640 4.18479 4.28099 4.34290 4.43027 4.43692 4.48088 4.54052 4.57425 4.59183 4.60710 4.69722 4.77993 4.79456 4.84260 5.05609 5.14381 5.20369 5.25996 5.33366 5.38378 5.46487 5.52983 5.55951 5.68948 5.98194 6.30821 6.42664 6.85264 7.12704 7.37094 8.13520 8.36943 9.31958 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026505 B = 0.001746 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.134137 B =16035.506305 C =16526.143061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.120 3.880 5 N -0.350 5.350 6 C 0.120 3.880 7 C -0.123 4.123 8 C 0.606 3.394 9 O -0.564 6.564 10 N -0.704 5.704 11 C 0.160 3.840 12 H 0.079 0.921 13 C -0.117 4.117 14 C -0.105 4.105 15 C -0.127 4.127 16 C 0.178 3.822 17 H 0.040 0.960 18 N -0.736 5.736 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.075 4.075 22 N -0.969 5.969 23 Si 0.970 3.030 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.278 1.278 27 C -0.117 4.117 28 N -0.221 5.221 29 N -0.086 5.086 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.242 0.758 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.059 0.941 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.461 -26.968 7.427 34.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.001 3.999 5 N -0.136 5.136 6 C -0.038 4.038 7 C -0.263 4.263 8 C 0.391 3.609 9 O -0.443 6.443 10 N -0.353 5.353 11 C 0.055 3.945 12 H 0.097 0.903 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.069 3.931 17 H 0.058 0.942 18 N -0.376 5.376 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.799 3.201 24 H -0.206 1.206 25 H -0.223 1.223 26 H -0.204 1.204 27 C -0.156 4.156 28 N -0.095 5.095 29 N -0.066 5.066 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.166 0.834 37 H 0.258 0.742 38 H 0.248 0.752 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.204 0.796 46 H 0.058 0.942 47 H 0.078 0.922 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.573 -27.004 6.931 34.648 hybrid contribution 0.798 0.989 -0.152 1.280 sum -19.775 -26.015 6.779 33.373 Atomic orbital electron populations 1.22978 0.78620 1.04347 1.00988 1.87752 1.21981 1.26592 1.95691 1.22562 0.92286 0.85675 1.02011 1.22041 0.92736 0.76359 1.08797 1.50475 1.29926 1.13962 1.19188 1.23898 0.90531 0.93740 0.95593 1.21469 1.08069 0.96756 1.00000 1.16911 0.80089 0.81125 0.82744 1.90789 1.50049 1.76786 1.26653 1.45873 1.45208 1.12593 1.31610 1.20848 0.91766 0.89404 0.92465 0.90293 1.21824 0.98549 0.98280 0.96860 1.21409 0.98894 0.96449 0.97600 1.22101 0.99407 0.98172 0.97040 1.20325 0.94007 0.89033 0.89751 0.94158 1.42582 1.21410 1.46848 1.26746 1.19584 0.96379 1.15584 1.05489 0.90773 1.25514 1.02273 1.01478 0.97494 1.69810 1.40176 1.37481 1.14556 0.85262 0.80056 0.78027 0.76737 1.20551 1.22275 1.20437 1.21900 0.99394 0.96423 0.97848 1.74647 1.04328 1.19836 1.10671 1.81943 1.20802 0.91062 1.12825 0.93324 0.87744 0.93046 0.92132 0.92367 0.86336 0.83413 0.74229 0.75155 0.91226 0.91395 0.90486 0.91842 0.93087 0.93858 0.79571 0.94157 0.92248 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -3.87 10.70 -148.98 -1.59 -5.46 16 3 C 0.05 0.44 6.14 71.98 0.44 0.88 16 4 C 0.12 0.72 6.91 86.38 0.60 1.32 16 5 N -0.35 -4.63 3.69 -347.11 -1.28 -5.91 16 6 C 0.12 1.67 11.27 83.85 0.95 2.62 16 7 C -0.12 -2.67 6.99 40.82 0.29 -2.39 16 8 C 0.61 15.62 7.78 86.69 0.67 16.29 16 9 O -0.56 -16.85 16.52 -3.99 -0.07 -16.91 16 10 N -0.70 -17.87 5.07 -445.71 -2.26 -20.13 16 11 C 0.16 4.46 2.45 44.99 0.11 4.57 16 12 H 0.08 2.42 7.58 -2.39 -0.02 2.40 16 13 C -0.12 -2.98 5.49 30.60 0.17 -2.81 16 14 C -0.10 -2.83 5.92 30.59 0.18 -2.65 16 15 C -0.13 -4.44 5.50 30.60 0.17 -4.27 16 16 C 0.18 7.00 2.77 45.01 0.12 7.12 16 17 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 18 N -0.74 -37.29 5.12 -322.85 -1.65 -38.94 16 19 C -0.24 -13.35 9.93 84.04 0.83 -12.52 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 22 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 23 Si 0.97 46.67 29.55 68.60 2.03 48.70 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C -0.12 -3.80 4.86 30.61 0.15 -3.65 16 28 N -0.22 -5.28 12.04 -49.99 -0.60 -5.88 16 29 N -0.09 -1.80 13.65 37.02 0.51 -1.30 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.15 -0.01 8.08 -2.39 -0.02 -0.03 16 37 H 0.24 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.41 9.77 8.29 -92.71 -0.77 9.00 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.37 20.21 7.80 -92.71 -0.72 19.49 16 46 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -73.65 401.29 1.24 -72.41 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.52 Total: 30.97 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 6.40 Total: 2.00 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -5.01 Total: -131.70 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -1.66 Total: -22.37 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.65 1.24 -72.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981080595.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.264 kcal (2) G-P(sol) polarization free energy of solvation -73.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds