Wall clock time and date at job start Tue Mar 31 2020 21:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47356 * 180.02562 * 4 3 2 6 6 C 1.34814 * 126.60096 * 125.00196 * 5 4 3 7 7 C 1.36586 * 106.84343 * 179.97438 * 6 5 4 8 8 C 1.47522 * 125.77127 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00107 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00099 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46961 * 324.99831 * 11 10 8 13 13 C 1.53001 * 109.47116 * 84.99596 * 11 10 8 14 14 C 1.53000 * 109.46659 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47406 * 300.00046 * 14 13 11 16 16 C 1.52997 * 109.47180 * 59.99951 * 15 14 13 17 17 H 1.09003 * 109.47307 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.46701 * 60.00140 * 16 15 14 19 19 C 1.36944 * 119.99672 * 85.00276 * 18 16 15 20 20 H 1.07996 * 120.00111 * 359.97438 * 19 18 16 21 21 C 1.38807 * 119.99608 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00351 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47124 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47137 * 120.00111 * 23 21 19 26 26 H 1.48505 * 109.47192 * 239.99914 * 23 21 19 27 27 C 1.52999 * 109.47516 * 300.00367 * 16 15 14 28 28 N 1.34404 * 108.45823 * 359.97438 * 7 6 5 29 29 N 1.28757 * 109.52140 * 359.73869 * 28 7 6 30 30 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 32 32 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 34 34 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 35 35 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 36 36 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 37 37 H 1.08007 * 126.57324 * 359.97074 * 6 5 4 38 38 H 0.97000 * 120.00298 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47233 * 299.99935 * 13 11 10 40 40 H 1.08998 * 109.47014 * 60.00268 * 13 11 10 41 41 H 1.09001 * 109.46447 * 180.02562 * 14 13 11 42 42 H 1.08998 * 109.47350 * 60.00277 * 14 13 11 43 43 H 1.09012 * 109.47142 * 300.00420 * 15 14 13 44 44 H 1.08998 * 109.47412 * 180.02562 * 15 14 13 45 45 H 0.96993 * 120.00113 * 264.99660 * 18 16 15 46 46 H 0.97005 * 120.00455 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47035 * 299.99733 * 27 16 15 48 48 H 1.08998 * 109.47437 * 179.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0251 3.0044 0.8883 7 6 5.3067 4.2863 0.5103 8 6 6.2385 5.2024 1.1950 9 8 6.8337 4.8331 2.1889 10 7 6.4299 6.4487 0.7190 11 6 7.3557 7.3583 1.3987 12 1 7.3129 7.1836 2.4738 13 6 8.7790 7.1060 0.8972 14 6 9.7457 8.0555 1.6076 15 6 9.3494 9.5031 1.3106 16 6 7.9261 9.7554 1.8120 17 1 7.6439 10.7869 1.6008 18 7 7.8685 9.5200 3.2569 19 6 8.2119 10.5196 4.1276 20 1 8.5255 11.4812 3.7493 21 6 8.1569 10.2967 5.4966 22 7 7.7742 9.1248 5.9577 23 14 8.6259 11.6599 6.6844 24 1 9.0179 12.8705 5.9188 25 1 7.4660 11.9784 7.5554 26 1 9.7673 11.2144 7.5235 27 6 6.9592 8.8059 1.1017 28 7 4.5914 4.5720 -0.5912 29 7 3.8872 3.5469 -0.9248 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 -0.8899 34 1 1.6887 1.8463 0.8900 35 1 3.8568 0.6438 0.8908 36 1 3.8575 0.6435 -0.8891 37 1 5.4390 2.4775 1.7355 38 1 5.9554 6.7432 -0.0741 39 1 9.0615 6.0748 1.1093 40 1 8.8217 7.2807 -0.1778 41 1 10.7596 7.8761 1.2500 42 1 9.7029 7.8804 2.6826 43 1 9.3922 9.6783 0.2355 44 1 10.0384 10.1796 1.8163 45 1 7.5872 8.6562 3.5967 46 1 7.7361 8.9689 6.9144 47 1 7.0021 8.9810 0.0267 48 1 5.9453 8.9853 1.4593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981080596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:37 Heat of formation + Delta-G solvation = 20.362724 kcal Electronic energy + Delta-G solvation = -28859.812394 eV Core-core repulsion = 24759.222926 eV Total energy + Delta-G solvation = -4100.589468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.45563 -39.62872 -38.63176 -37.83732 -35.30383 -34.39721 -32.96989 -31.43193 -30.88747 -30.43950 -28.96567 -27.93139 -26.99201 -24.50857 -24.03447 -23.51987 -22.10251 -21.82363 -21.50371 -20.23338 -18.84359 -18.03895 -17.24676 -17.10099 -16.94830 -16.26814 -15.98920 -15.85595 -15.45927 -14.77747 -14.69338 -14.61423 -14.51190 -14.05910 -13.78575 -13.55504 -13.50835 -13.04902 -12.85133 -12.63120 -12.28083 -12.21076 -11.99041 -11.96605 -11.70549 -11.47807 -11.32254 -10.85598 -10.77790 -10.71567 -10.67019 -10.36972 -10.22324 -10.12714 -10.00960 -9.96787 -9.54644 -9.51303 -9.43981 -8.85695 -8.67016 -6.87726 -5.68779 -2.97515 0.85961 1.54591 1.59694 3.11103 3.25869 3.37180 3.47622 3.53106 3.55404 3.94620 4.05132 4.19236 4.51535 4.57071 4.65166 4.68453 4.75841 4.77775 4.85168 4.98551 5.11883 5.15820 5.21143 5.30001 5.53482 5.61478 5.66257 5.78284 5.80919 5.92513 5.98328 5.99086 6.15719 6.19277 6.27258 6.38979 6.44669 6.51451 6.68792 6.75973 6.87314 6.92332 7.08873 7.17703 7.55857 7.77594 7.81638 8.35961 8.49299 9.60423 10.18671 10.53003 11.53517 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002110 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.916714 B =13269.130131 C =14220.259949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.098 3.902 7 C -0.094 4.094 8 C 0.599 3.401 9 O -0.530 6.530 10 N -0.708 5.708 11 C 0.146 3.854 12 H 0.101 0.899 13 C -0.121 4.121 14 C -0.109 4.109 15 C -0.135 4.135 16 C 0.179 3.821 17 H 0.051 0.949 18 N -0.721 5.721 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.128 4.128 28 N -0.201 5.201 29 N -0.067 5.067 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.208 0.792 38 H 0.403 0.597 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.061 0.939 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.062 0.938 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 -17.845 -15.867 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.058 4.058 7 C -0.233 4.233 8 C 0.382 3.618 9 O -0.405 6.405 10 N -0.357 5.357 11 C 0.042 3.958 12 H 0.119 0.881 13 C -0.159 4.159 14 C -0.147 4.147 15 C -0.175 4.175 16 C 0.068 3.932 17 H 0.069 0.931 18 N -0.364 5.364 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.167 4.167 28 N -0.075 5.075 29 N -0.048 5.048 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.224 0.776 38 H 0.237 0.763 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.220 0.780 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.836 -17.747 -16.298 26.419 hybrid contribution 0.176 0.295 1.325 1.369 sum -10.661 -17.451 -14.973 25.345 Atomic orbital electron populations 1.22815 0.79585 1.03308 1.00591 1.87777 1.20856 1.26448 1.95643 1.22628 0.91889 0.85815 1.02503 1.21681 0.93207 0.78030 1.06637 1.50258 1.30821 1.13606 1.20340 1.23447 0.91785 0.94998 0.95593 1.21642 1.07041 0.95631 0.99013 1.16747 0.80374 0.81485 0.83175 1.90867 1.48790 1.75830 1.25020 1.45960 1.45527 1.12772 1.31448 1.21126 0.87741 0.88152 0.98736 0.88120 1.21854 0.94748 0.99850 0.99471 1.21359 0.96696 0.94626 1.02063 1.22175 1.00397 0.96477 0.98498 1.20166 0.91459 0.95917 0.85626 0.93070 1.42520 1.80375 1.14786 0.98716 1.19274 1.36939 0.93173 0.87361 0.91176 1.24732 1.02563 0.96859 0.96881 1.69678 1.53930 1.21645 1.12608 0.86165 0.77581 0.81272 0.81451 1.20648 1.22045 1.22019 1.22079 1.00846 0.93621 1.00149 1.74634 1.03842 1.18780 1.10287 1.81966 1.20543 0.90589 1.11673 0.93602 0.93546 0.88991 0.91240 0.92191 0.86637 0.87355 0.77561 0.76255 0.92254 0.92686 0.93299 0.90299 0.93857 0.92032 0.78031 0.93623 0.91913 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.55 10.70 -35.23 -0.38 -2.93 16 3 C 0.05 0.30 6.15 37.16 0.23 0.52 16 4 C 0.13 0.67 6.91 -4.05 -0.03 0.65 16 5 N -0.36 -3.21 3.69 -61.07 -0.23 -3.43 16 6 C 0.10 0.96 11.27 -16.84 -0.19 0.77 16 7 C -0.09 -1.22 6.99 -83.55 -0.58 -1.81 16 8 C 0.60 9.39 7.78 -12.48 -0.10 9.30 16 9 O -0.53 -10.02 16.53 5.28 0.09 -9.93 16 10 N -0.71 -10.43 5.07 -54.85 -0.28 -10.71 16 11 C 0.15 2.45 2.28 -67.93 -0.15 2.30 16 12 H 0.10 2.11 5.94 -51.93 -0.31 1.80 16 13 C -0.12 -1.93 5.50 -26.73 -0.15 -2.08 16 14 C -0.11 -1.92 5.76 -26.73 -0.15 -2.07 16 15 C -0.14 -2.38 5.61 -26.73 -0.15 -2.53 16 16 C 0.18 3.47 3.10 -67.93 -0.21 3.26 16 17 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 18 N -0.72 -17.73 4.28 -53.42 -0.23 -17.96 16 19 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 23 Si 0.90 22.59 29.55 -169.99 -5.02 17.56 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 C -0.13 -2.08 5.08 -26.73 -0.14 -2.22 16 28 N -0.20 -2.63 12.04 32.84 0.40 -2.24 16 29 N -0.07 -0.79 13.65 60.35 0.82 0.04 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.12 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.21 1.46 8.06 -52.48 -0.42 1.03 16 38 H 0.40 5.12 8.29 -40.82 -0.34 4.78 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.66 7.60 -51.93 -0.39 1.27 16 43 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.38 10.21 6.06 -40.82 -0.25 9.96 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -34.14 396.86 -6.47 -40.61 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.59 Total: 10.49 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -0.76 Total: 0.20 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 1.21 Total: -61.98 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.29 Total: -12.86 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.14 -6.47 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981080596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.973 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds