Wall clock time and date at job start Tue Mar 31 2020 21:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47356 * 180.02562 * 4 3 2 6 6 C 1.34814 * 126.60096 * 125.00196 * 5 4 3 7 7 C 1.36586 * 106.84343 * 179.97438 * 6 5 4 8 8 C 1.47522 * 125.77127 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00107 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00099 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46961 * 324.99831 * 11 10 8 13 13 C 1.53001 * 109.47116 * 84.99596 * 11 10 8 14 14 C 1.53000 * 109.46659 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47406 * 300.00046 * 14 13 11 16 16 C 1.52997 * 109.47180 * 59.99951 * 15 14 13 17 17 H 1.09003 * 109.47307 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.46701 * 60.00140 * 16 15 14 19 19 C 1.36944 * 119.99672 * 85.00276 * 18 16 15 20 20 H 1.07996 * 120.00111 * 359.97438 * 19 18 16 21 21 C 1.38807 * 119.99608 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00351 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47124 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47137 * 120.00111 * 23 21 19 26 26 H 1.48505 * 109.47192 * 239.99914 * 23 21 19 27 27 C 1.52999 * 109.47516 * 300.00367 * 16 15 14 28 28 N 1.34404 * 108.45823 * 359.97438 * 7 6 5 29 29 N 1.28757 * 109.52140 * 359.73869 * 28 7 6 30 30 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 32 32 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 34 34 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 35 35 H 1.09002 * 109.47184 * 300.00269 * 4 3 2 36 36 H 1.09003 * 109.47090 * 59.99900 * 4 3 2 37 37 H 1.08007 * 126.57324 * 359.97074 * 6 5 4 38 38 H 0.97000 * 120.00298 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47233 * 299.99935 * 13 11 10 40 40 H 1.08998 * 109.47014 * 60.00268 * 13 11 10 41 41 H 1.09001 * 109.46447 * 180.02562 * 14 13 11 42 42 H 1.08998 * 109.47350 * 60.00277 * 14 13 11 43 43 H 1.09012 * 109.47142 * 300.00420 * 15 14 13 44 44 H 1.08998 * 109.47412 * 180.02562 * 15 14 13 45 45 H 0.96993 * 120.00113 * 264.99660 * 18 16 15 46 46 H 0.97005 * 120.00455 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.47035 * 299.99733 * 27 16 15 48 48 H 1.08998 * 109.47437 * 179.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0251 3.0044 0.8883 7 6 5.3067 4.2863 0.5103 8 6 6.2385 5.2024 1.1950 9 8 6.8337 4.8331 2.1889 10 7 6.4299 6.4487 0.7190 11 6 7.3557 7.3583 1.3987 12 1 7.3129 7.1836 2.4738 13 6 8.7790 7.1060 0.8972 14 6 9.7457 8.0555 1.6076 15 6 9.3494 9.5031 1.3106 16 6 7.9261 9.7554 1.8120 17 1 7.6439 10.7869 1.6008 18 7 7.8685 9.5200 3.2569 19 6 8.2119 10.5196 4.1276 20 1 8.5255 11.4812 3.7493 21 6 8.1569 10.2967 5.4966 22 7 7.7742 9.1248 5.9577 23 14 8.6259 11.6599 6.6844 24 1 9.0179 12.8705 5.9188 25 1 7.4660 11.9784 7.5554 26 1 9.7673 11.2144 7.5235 27 6 6.9592 8.8059 1.1017 28 7 4.5914 4.5720 -0.5912 29 7 3.8872 3.5469 -0.9248 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6887 1.8463 -0.8899 34 1 1.6887 1.8463 0.8900 35 1 3.8568 0.6438 0.8908 36 1 3.8575 0.6435 -0.8891 37 1 5.4390 2.4775 1.7355 38 1 5.9554 6.7432 -0.0741 39 1 9.0615 6.0748 1.1093 40 1 8.8217 7.2807 -0.1778 41 1 10.7596 7.8761 1.2500 42 1 9.7029 7.8804 2.6826 43 1 9.3922 9.6783 0.2355 44 1 10.0384 10.1796 1.8163 45 1 7.5872 8.6562 3.5967 46 1 7.7361 8.9689 6.9144 47 1 7.0021 8.9810 0.0267 48 1 5.9453 8.9853 1.4593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981080596.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:35 Heat of formation + Delta-G solvation = -5.324277 kcal Electronic energy + Delta-G solvation = -28860.926266 eV Core-core repulsion = 24759.222926 eV Total energy + Delta-G solvation = -4101.703339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.31582 -40.92966 -39.30319 -39.05154 -36.10032 -35.89328 -34.66256 -32.69757 -32.27301 -31.26262 -30.30607 -29.50994 -27.41720 -25.68883 -25.12805 -24.97092 -23.26872 -22.84532 -22.76053 -21.40189 -20.16716 -19.20557 -19.05948 -17.85186 -17.53678 -17.26412 -16.91134 -16.72728 -16.50782 -16.14902 -15.90953 -15.64787 -15.56675 -15.28104 -15.24667 -15.12652 -14.64306 -14.57635 -13.74293 -13.51310 -13.41560 -13.38128 -13.24179 -12.86145 -12.83370 -12.80631 -12.56128 -12.44227 -12.19759 -12.14301 -12.08127 -11.76893 -11.58048 -11.50537 -11.44061 -11.21046 -10.93768 -10.80864 -10.80133 -10.45457 -9.97613 -8.92011 -7.87477 -5.14810 0.05915 0.57822 0.87783 1.48139 1.48826 1.58639 2.10259 2.22856 2.60138 2.64782 3.13679 3.42524 3.45825 3.71077 3.76427 3.81812 3.91709 3.95895 4.07215 4.10790 4.17277 4.22310 4.39390 4.42969 4.45849 4.48834 4.52232 4.58577 4.61355 4.72798 4.76817 4.80382 4.83654 4.85486 5.05550 5.14269 5.23038 5.31187 5.34195 5.46273 5.47761 5.56594 5.65859 5.71225 5.97463 6.34603 6.45268 6.85073 7.18218 7.40129 8.19470 8.40485 9.36242 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002110 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.916714 B =13269.130131 C =14220.259949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.349 5.349 6 C 0.116 3.884 7 C -0.119 4.119 8 C 0.599 3.401 9 O -0.571 6.571 10 N -0.698 5.698 11 C 0.153 3.847 12 H 0.051 0.949 13 C -0.110 4.110 14 C -0.105 4.105 15 C -0.126 4.126 16 C 0.168 3.832 17 H 0.054 0.946 18 N -0.733 5.733 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.082 4.082 22 N -0.972 5.972 23 Si 0.968 3.032 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.299 1.299 27 C -0.117 4.117 28 N -0.215 5.215 29 N -0.081 5.081 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.235 0.765 38 H 0.415 0.585 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.371 0.629 46 H 0.247 0.753 47 H 0.105 0.895 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 -18.246 -18.155 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.025 4.025 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.042 4.042 7 C -0.259 4.259 8 C 0.384 3.616 9 O -0.449 6.449 10 N -0.348 5.348 11 C 0.049 3.951 12 H 0.070 0.930 13 C -0.149 4.149 14 C -0.144 4.144 15 C -0.166 4.166 16 C 0.060 3.940 17 H 0.072 0.928 18 N -0.374 5.374 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.799 3.201 24 H -0.188 1.188 25 H -0.225 1.225 26 H -0.226 1.226 27 C -0.155 4.155 28 N -0.089 5.089 29 N -0.061 5.061 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.252 0.748 38 H 0.252 0.748 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.204 0.796 46 H 0.056 0.944 47 H 0.123 0.877 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.092 -18.123 -18.681 28.292 hybrid contribution 0.176 0.329 1.937 1.973 sum -10.916 -17.794 -16.744 26.761 Atomic orbital electron populations 1.22985 0.78607 1.04373 1.00980 1.87752 1.21994 1.26531 1.95691 1.22559 0.92273 0.85709 1.02000 1.22044 0.92734 0.76333 1.08810 1.50433 1.29929 1.14072 1.19052 1.23835 0.90758 0.93978 0.95597 1.21364 1.08009 0.96484 0.99996 1.17073 0.80172 0.81764 0.82641 1.90844 1.50569 1.76648 1.26856 1.45789 1.45146 1.12354 1.31538 1.20831 0.88994 0.88999 0.96272 0.93031 1.21759 0.93403 0.98727 1.00974 1.21288 0.98458 0.95217 0.99400 1.22053 0.98156 0.95794 1.00610 1.20483 0.93541 0.96923 0.83100 0.92825 1.42738 1.80167 1.13593 1.00910 1.19686 1.34558 0.93796 0.87953 0.90409 1.25524 1.04064 0.99039 0.98790 1.69856 1.56447 1.23817 1.12240 0.85128 0.76629 0.79206 0.79165 1.18816 1.22501 1.22629 1.21963 0.99229 0.92197 1.02129 1.74601 1.04203 1.19635 1.10481 1.81894 1.20617 0.91057 1.12549 0.93275 0.93128 0.87667 0.92013 0.92517 0.83817 0.85897 0.74848 0.74786 0.93369 0.89395 0.91247 0.94965 0.89797 0.93946 0.79605 0.94422 0.87678 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.59 10.70 -148.98 -1.59 -6.18 16 3 C 0.05 0.54 6.15 71.98 0.44 0.99 16 4 C 0.12 0.99 6.91 86.38 0.60 1.58 16 5 N -0.35 -5.47 3.69 -347.11 -1.28 -6.75 16 6 C 0.12 2.09 11.27 83.85 0.95 3.03 16 7 C -0.12 -3.01 6.99 40.81 0.29 -2.72 16 8 C 0.60 18.88 7.78 86.69 0.67 19.56 16 9 O -0.57 -22.30 16.53 -4.00 -0.07 -22.37 16 10 N -0.70 -20.24 5.07 -445.70 -2.26 -22.50 16 11 C 0.15 5.15 2.28 44.99 0.10 5.26 16 12 H 0.05 2.29 5.94 -2.39 -0.01 2.27 16 13 C -0.11 -3.39 5.50 30.59 0.17 -3.22 16 14 C -0.11 -3.63 5.76 30.59 0.18 -3.45 16 15 C -0.13 -4.23 5.61 30.59 0.17 -4.05 16 16 C 0.17 6.38 3.10 44.99 0.14 6.52 16 17 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 18 N -0.73 -36.91 4.28 -322.93 -1.38 -38.29 16 19 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 20 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 21 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 22 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 23 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 26 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 27 C -0.12 -3.62 5.08 30.59 0.16 -3.47 16 28 N -0.22 -5.41 12.04 -50.00 -0.60 -6.02 16 29 N -0.08 -1.78 13.65 37.02 0.51 -1.27 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.14 0.43 8.08 -2.39 -0.02 0.41 16 36 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.24 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.42 9.95 8.29 -92.71 -0.77 9.18 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.03 1.40 7.60 -2.39 -0.02 1.38 16 43 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.37 20.71 6.06 -92.71 -0.56 20.15 16 46 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 47 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -77.46 396.86 1.69 -75.77 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.35 Total: 34.46 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.41 Total: 5.21 kcal Atomic # 7 Polarization: -131.59 SS G_CDS: -4.74 Total: -136.33 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.66 Total: -28.55 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -77.46 1.69 -75.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981080596.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.446 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds