Wall clock time and date at job start Tue Mar 31 2020 21:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99480 * 2 1 4 4 C 1.53005 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47077 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59721 * 125.29210 * 5 4 3 7 7 C 1.36592 * 106.84097 * 180.13463 * 6 5 4 8 8 C 1.47521 * 125.76946 * 179.90224 * 7 6 5 9 9 O 1.21595 * 119.99897 * 5.22678 * 8 7 6 10 10 N 1.34784 * 119.99963 * 185.22463 * 8 7 6 11 11 C 1.46497 * 119.99876 * 5.13955 * 10 8 7 12 12 C 1.46493 * 119.99943 * 185.13438 * 10 8 7 13 13 C 1.53349 * 109.41911 * 240.13185 * 12 10 8 14 14 C 1.53197 * 109.14786 * 178.67722 * 13 12 10 15 15 N 1.46925 * 108.89586 * 54.57688 * 14 13 12 16 16 C 1.36937 * 120.62865 * 126.29830 * 15 14 13 17 17 H 1.07999 * 119.99972 * 322.21190 * 16 15 14 18 18 C 1.38810 * 119.99505 * 142.21654 * 16 15 14 19 19 N 1.31616 * 120.00569 * 347.25343 * 18 16 15 20 20 Si 1.86803 * 119.99803 * 167.25577 * 18 16 15 21 21 H 1.48499 * 109.47193 * 59.99615 * 20 18 16 22 22 H 1.48501 * 109.47320 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46974 * 299.99796 * 20 18 16 24 24 C 1.46927 * 118.73634 * 306.31861 * 15 14 13 25 25 C 1.53036 * 109.46165 * 120.00211 * 12 10 8 26 26 N 1.34405 * 108.45906 * 359.63267 * 7 6 5 27 27 N 1.28758 * 109.52179 * 0.23007 * 26 7 6 28 28 H 1.08997 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47078 * 299.99692 * 1 2 3 30 30 H 1.08994 * 109.47549 * 59.99572 * 1 2 3 31 31 H 1.09000 * 109.47211 * 60.00366 * 3 2 1 32 32 H 1.08995 * 109.47502 * 300.00375 * 3 2 1 33 33 H 1.09000 * 109.47086 * 60.00131 * 4 3 2 34 34 H 1.08995 * 109.47286 * 300.00349 * 4 3 2 35 35 H 1.08003 * 126.57785 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.46935 * 275.39197 * 11 10 8 37 37 H 1.09001 * 109.47380 * 35.38996 * 11 10 8 38 38 H 1.08996 * 109.47042 * 155.39848 * 11 10 8 39 39 H 1.09002 * 109.46027 * 0.03020 * 12 10 8 40 40 H 1.08995 * 109.68551 * 58.70892 * 13 12 10 41 41 H 1.09002 * 109.47356 * 298.50873 * 13 12 10 42 42 H 1.08998 * 109.58741 * 294.71233 * 14 13 12 43 43 H 1.09005 * 109.58127 * 174.43639 * 14 13 12 44 44 H 0.96997 * 120.00267 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.58218 * 173.39494 * 24 15 14 46 46 H 1.09003 * 109.58683 * 293.68150 * 24 15 14 47 47 H 1.09001 * 109.49903 * 61.43534 * 25 12 10 48 48 H 1.08999 * 109.50093 * 301.33841 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0297 3.0025 0.8834 7 6 5.3064 4.2867 0.5090 8 6 6.2397 5.2021 1.1927 9 8 6.9120 4.8015 2.1233 10 7 6.3471 6.4825 0.7857 11 6 5.4582 6.9959 -0.2596 12 6 7.3526 7.3608 1.3886 13 6 6.6550 8.5549 2.0513 14 6 7.7093 9.4517 2.7080 15 7 8.7142 9.8202 1.7015 16 6 9.0250 11.1344 1.4747 17 1 8.2492 11.8853 1.5019 18 6 10.3372 11.5014 1.2096 19 7 11.3152 10.6461 1.4201 20 14 10.7151 13.2094 0.5542 21 1 10.2474 14.2281 1.5283 22 1 12.1799 13.3503 0.3548 23 1 10.0183 13.4075 -0.7422 24 6 9.3789 8.7519 0.9428 25 6 8.3085 7.8618 0.3036 26 7 4.5892 4.5732 -0.5909 27 7 3.8806 3.5501 -0.9211 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6884 1.8465 -0.8899 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6437 0.8890 35 1 5.4483 2.4736 1.7269 36 1 5.8708 6.7532 -1.2389 37 1 4.4741 6.5387 -0.1565 38 1 5.3685 8.0777 -0.1612 39 1 7.9149 6.8067 2.1403 40 1 5.9575 8.1984 2.8091 41 1 6.1129 9.1240 1.2960 42 1 8.1902 8.9127 3.5243 43 1 7.2328 10.3522 3.0955 44 1 12.2321 10.9028 1.2352 45 1 10.0023 9.1907 0.1638 46 1 9.9980 8.1574 1.6147 47 1 7.7507 8.4372 -0.4353 48 1 8.7857 7.0107 -0.1822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005376879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:57 Heat of formation + Delta-G solvation = 52.965567 kcal Electronic energy + Delta-G solvation = -29182.385489 eV Core-core repulsion = 25083.209787 eV Total energy + Delta-G solvation = -4099.175702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48934 -39.64538 -38.65451 -37.30036 -35.44444 -34.88768 -32.44918 -31.40835 -30.53996 -29.95734 -29.38191 -27.06092 -26.72845 -25.26568 -24.52128 -23.56545 -22.12584 -22.09660 -21.64424 -19.71501 -18.83929 -17.91911 -17.07806 -16.94226 -16.61846 -16.35228 -16.24665 -15.72474 -15.54770 -14.93617 -14.73415 -14.67051 -14.20098 -13.97511 -13.60511 -13.43901 -12.96642 -12.94413 -12.77651 -12.61521 -12.58322 -12.44709 -12.27244 -12.07408 -11.88947 -11.39479 -11.13496 -11.07291 -10.78097 -10.71838 -10.68512 -10.40156 -10.32213 -10.16191 -10.08164 -9.89398 -9.72219 -9.51729 -9.45240 -8.47151 -8.24270 -6.49942 -5.76451 -3.29617 0.84473 1.53715 1.59203 3.08036 3.14513 3.31387 3.40153 3.45488 3.46554 3.90464 4.04282 4.16395 4.43781 4.51104 4.51275 4.66305 4.72102 4.73243 4.82223 4.95433 5.08397 5.12932 5.31472 5.41425 5.45746 5.53970 5.58691 5.61094 5.87833 5.92101 5.98203 6.13887 6.14488 6.33272 6.35912 6.39344 6.54996 6.64274 6.68181 6.85136 6.96129 7.03420 7.34272 7.53922 7.64262 7.72427 7.84510 8.28173 8.54773 9.25470 9.85333 10.48997 11.31559 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037028 B = 0.001935 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.011442 B =14468.849445 C =14598.702225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.096 3.904 7 C -0.091 4.091 8 C 0.596 3.404 9 O -0.543 6.543 10 N -0.591 5.591 11 C 0.083 3.917 12 C 0.146 3.854 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.589 5.589 16 C -0.261 4.261 17 H 0.060 0.940 18 C 0.013 3.987 19 N -0.898 5.898 20 Si 0.902 3.098 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.179 3.821 25 C -0.145 4.145 26 N -0.196 5.196 27 N -0.071 5.071 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.057 0.943 44 H 0.255 0.745 45 H 0.076 0.924 46 H 0.023 0.977 47 H 0.059 0.941 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.059 -21.206 -3.053 29.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.150 5.150 6 C -0.060 4.060 7 C -0.230 4.230 8 C 0.381 3.619 9 O -0.420 6.420 10 N -0.321 5.321 11 C -0.060 4.060 12 C 0.045 3.955 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.078 0.922 18 C -0.187 4.187 19 N -0.540 5.540 20 Si 0.731 3.269 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.052 3.948 25 C -0.185 4.185 26 N -0.070 5.070 27 N -0.051 5.051 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.223 0.777 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.078 0.922 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.199 -21.175 -3.834 29.514 hybrid contribution 0.474 0.609 0.366 0.854 sum -19.725 -20.567 -3.468 28.707 Atomic orbital electron populations 1.22811 0.79600 1.03315 1.00567 1.87781 1.20843 1.26461 1.95636 1.22622 0.91905 0.85791 1.02452 1.21674 0.93175 0.78114 1.06603 1.50265 1.30546 1.13520 1.20670 1.23400 0.91976 0.94893 0.95737 1.21601 1.06973 0.95432 0.99001 1.16829 0.81101 0.81476 0.82448 1.90798 1.46087 1.76343 1.28804 1.47970 1.35643 1.09869 1.38609 1.21928 0.93851 0.99952 0.90305 1.21309 0.88198 0.90012 0.96027 1.22441 0.99126 0.96537 0.99731 1.20887 0.89869 0.95948 0.91171 1.43941 1.45085 1.02723 1.39472 1.19020 0.91169 0.84036 1.44895 0.92232 1.25316 0.95897 0.97370 1.00166 1.69993 0.98899 1.35236 1.49872 0.86406 0.76912 0.84409 0.79156 1.20754 1.21634 1.20898 1.20645 0.91066 0.88168 0.94871 1.22558 0.98727 0.99500 0.97712 1.74864 1.03857 1.18104 1.10159 1.81998 1.20843 0.90585 1.11703 0.88992 0.93659 0.93516 0.92278 0.91215 0.87363 0.86728 0.77706 0.92397 0.90355 0.90919 0.88559 0.92866 0.92002 0.96205 0.92472 0.93510 0.90590 0.95860 0.92244 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.39 10.70 -35.23 -0.38 -2.77 16 3 C 0.05 0.28 6.14 37.16 0.23 0.51 16 4 C 0.13 0.64 6.91 -4.04 -0.03 0.61 16 5 N -0.36 -3.12 3.69 -61.06 -0.23 -3.34 16 6 C 0.10 0.92 11.28 -16.83 -0.19 0.73 16 7 C -0.09 -1.19 6.63 -83.55 -0.55 -1.75 16 8 C 0.60 9.55 7.66 -12.47 -0.10 9.45 16 9 O -0.54 -10.02 16.21 5.28 0.09 -9.93 16 10 N -0.59 -9.48 2.76 -174.94 -0.48 -9.96 16 11 C 0.08 1.14 8.34 59.85 0.50 1.64 16 12 C 0.15 2.67 2.47 -67.73 -0.17 2.50 16 13 C -0.14 -2.49 5.35 -26.45 -0.14 -2.63 16 14 C 0.15 3.18 6.50 -3.71 -0.02 3.15 16 15 N -0.59 -14.84 2.94 -172.32 -0.51 -15.35 16 16 C -0.26 -7.18 9.48 -15.06 -0.14 -7.32 16 17 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 18 C 0.01 0.35 4.96 -17.43 -0.09 0.27 16 19 N -0.90 -26.24 11.69 55.49 0.65 -25.59 16 20 Si 0.90 21.66 29.57 -169.99 -5.03 16.64 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.18 4.30 5.25 -3.71 -0.02 4.28 16 25 C -0.14 -2.84 5.34 -26.61 -0.14 -2.98 16 26 N -0.20 -2.57 9.03 32.85 0.30 -2.27 16 27 N -0.07 -0.82 13.65 60.35 0.82 0.00 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.32 8.08 -51.93 -0.42 -0.10 16 35 H 0.21 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 37 H 0.08 1.02 5.87 -51.93 -0.30 0.71 16 38 H 0.07 0.98 6.47 -51.93 -0.34 0.65 16 39 H 0.10 1.95 6.91 -51.93 -0.36 1.59 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.10 6.73 -51.93 -0.35 0.75 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.08 2.01 6.69 -51.93 -0.35 1.66 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 389.08 15.07 5.86 5.86 Total: -1.00 -33.45 389.08 -6.20 -39.65 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.55 Total: -2.63 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 0.25 Total: 9.70 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.55 Total: -56.51 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.29 Total: -12.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.45 -6.20 -39.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005376879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.615 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds