Wall clock time and date at job start Tue Mar 31 2020 21:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99480 * 2 1 4 4 C 1.53005 * 109.46767 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47077 * 180.02562 * 4 3 2 6 6 C 1.34820 * 126.59721 * 125.29210 * 5 4 3 7 7 C 1.36592 * 106.84097 * 180.13463 * 6 5 4 8 8 C 1.47521 * 125.76946 * 179.90224 * 7 6 5 9 9 O 1.21595 * 119.99897 * 5.22678 * 8 7 6 10 10 N 1.34784 * 119.99963 * 185.22463 * 8 7 6 11 11 C 1.46497 * 119.99876 * 5.13955 * 10 8 7 12 12 C 1.46493 * 119.99943 * 185.13438 * 10 8 7 13 13 C 1.53349 * 109.41911 * 240.13185 * 12 10 8 14 14 C 1.53197 * 109.14786 * 178.67722 * 13 12 10 15 15 N 1.46925 * 108.89586 * 54.57688 * 14 13 12 16 16 C 1.36937 * 120.62865 * 126.29830 * 15 14 13 17 17 H 1.07999 * 119.99972 * 322.21190 * 16 15 14 18 18 C 1.38810 * 119.99505 * 142.21654 * 16 15 14 19 19 N 1.31616 * 120.00569 * 347.25343 * 18 16 15 20 20 Si 1.86803 * 119.99803 * 167.25577 * 18 16 15 21 21 H 1.48499 * 109.47193 * 59.99615 * 20 18 16 22 22 H 1.48501 * 109.47320 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46974 * 299.99796 * 20 18 16 24 24 C 1.46927 * 118.73634 * 306.31861 * 15 14 13 25 25 C 1.53036 * 109.46165 * 120.00211 * 12 10 8 26 26 N 1.34405 * 108.45906 * 359.63267 * 7 6 5 27 27 N 1.28758 * 109.52179 * 0.23007 * 26 7 6 28 28 H 1.08997 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47078 * 299.99692 * 1 2 3 30 30 H 1.08994 * 109.47549 * 59.99572 * 1 2 3 31 31 H 1.09000 * 109.47211 * 60.00366 * 3 2 1 32 32 H 1.08995 * 109.47502 * 300.00375 * 3 2 1 33 33 H 1.09000 * 109.47086 * 60.00131 * 4 3 2 34 34 H 1.08995 * 109.47286 * 300.00349 * 4 3 2 35 35 H 1.08003 * 126.57785 * 359.97438 * 6 5 4 36 36 H 1.09003 * 109.46935 * 275.39197 * 11 10 8 37 37 H 1.09001 * 109.47380 * 35.38996 * 11 10 8 38 38 H 1.08996 * 109.47042 * 155.39848 * 11 10 8 39 39 H 1.09002 * 109.46027 * 0.03020 * 12 10 8 40 40 H 1.08995 * 109.68551 * 58.70892 * 13 12 10 41 41 H 1.09002 * 109.47356 * 298.50873 * 13 12 10 42 42 H 1.08998 * 109.58741 * 294.71233 * 14 13 12 43 43 H 1.09005 * 109.58127 * 174.43639 * 14 13 12 44 44 H 0.96997 * 120.00267 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.58218 * 173.39494 * 24 15 14 46 46 H 1.09003 * 109.58683 * 293.68150 * 24 15 14 47 47 H 1.09001 * 109.49903 * 61.43534 * 25 12 10 48 48 H 1.08999 * 109.50093 * 301.33841 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0297 3.0025 0.8834 7 6 5.3064 4.2867 0.5090 8 6 6.2397 5.2021 1.1927 9 8 6.9120 4.8015 2.1233 10 7 6.3471 6.4825 0.7857 11 6 5.4582 6.9959 -0.2596 12 6 7.3526 7.3608 1.3886 13 6 6.6550 8.5549 2.0513 14 6 7.7093 9.4517 2.7080 15 7 8.7142 9.8202 1.7015 16 6 9.0250 11.1344 1.4747 17 1 8.2492 11.8853 1.5019 18 6 10.3372 11.5014 1.2096 19 7 11.3152 10.6461 1.4201 20 14 10.7151 13.2094 0.5542 21 1 10.2474 14.2281 1.5283 22 1 12.1799 13.3503 0.3548 23 1 10.0183 13.4075 -0.7422 24 6 9.3789 8.7519 0.9428 25 6 8.3085 7.8618 0.3036 26 7 4.5892 4.5732 -0.5909 27 7 3.8806 3.5501 -0.9211 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6884 1.8465 -0.8899 33 1 3.8567 0.6440 -0.8909 34 1 3.8574 0.6437 0.8890 35 1 5.4483 2.4736 1.7269 36 1 5.8708 6.7532 -1.2389 37 1 4.4741 6.5387 -0.1565 38 1 5.3685 8.0777 -0.1612 39 1 7.9149 6.8067 2.1403 40 1 5.9575 8.1984 2.8091 41 1 6.1129 9.1240 1.2960 42 1 8.1902 8.9127 3.5243 43 1 7.2328 10.3522 3.0955 44 1 12.2321 10.9028 1.2352 45 1 10.0023 9.1907 0.1638 46 1 9.9980 8.1574 1.6147 47 1 7.7507 8.4372 -0.4353 48 1 8.7857 7.0107 -0.1822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005376879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:55 Heat of formation + Delta-G solvation = 30.351696 kcal Electronic energy + Delta-G solvation = -29183.366100 eV Core-core repulsion = 25083.209787 eV Total energy + Delta-G solvation = -4100.156313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.33006 -40.95029 -39.09099 -38.88563 -36.62830 -35.91919 -34.24939 -32.36129 -31.87214 -31.50278 -30.61430 -27.96766 -27.46215 -26.97145 -25.09422 -24.91765 -23.84685 -23.13465 -22.79012 -20.97985 -20.36246 -18.80105 -18.58029 -17.74103 -17.55469 -17.44792 -16.95641 -16.82215 -16.54756 -16.25782 -15.75974 -15.62958 -15.50144 -15.38235 -14.94597 -14.75248 -14.55588 -14.25838 -14.12306 -13.85223 -13.53483 -13.37241 -13.21496 -13.14390 -12.99428 -12.62221 -12.58275 -12.54198 -12.37733 -12.13414 -12.02353 -11.98229 -11.85940 -11.51210 -11.39014 -11.31699 -11.03729 -10.79174 -10.55390 -10.40724 -9.59392 -8.55640 -7.86524 -5.43988 0.07853 0.58725 0.90336 1.48791 1.50880 1.57711 1.93066 2.17400 2.51883 2.66948 3.09808 3.29657 3.42956 3.64001 3.69467 3.77534 3.89830 3.93609 4.06796 4.09032 4.19099 4.31063 4.35827 4.42628 4.44047 4.48136 4.50796 4.59955 4.66854 4.70044 4.77631 4.81115 4.84831 4.88694 5.05435 5.07012 5.10924 5.16439 5.32408 5.33888 5.42212 5.57743 5.65916 5.68192 5.99159 6.34906 6.45246 6.80392 7.07768 7.17158 7.83083 8.42413 9.19265 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.037028 B = 0.001935 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.011442 B =14468.849445 C =14598.702225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.349 5.349 6 C 0.119 3.881 7 C -0.119 4.119 8 C 0.596 3.404 9 O -0.573 6.573 10 N -0.593 5.593 11 C 0.088 3.912 12 C 0.156 3.844 13 C -0.122 4.122 14 C 0.145 3.855 15 N -0.606 5.606 16 C -0.271 4.271 17 H 0.064 0.936 18 C -0.041 4.041 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.273 1.273 22 H -0.295 1.295 23 H -0.275 1.275 24 C 0.188 3.812 25 C -0.128 4.128 26 N -0.211 5.211 27 N -0.086 5.086 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.119 0.881 34 H 0.145 0.855 35 H 0.238 0.762 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.009 0.991 43 H 0.062 0.938 44 H 0.251 0.749 45 H 0.045 0.955 46 H -0.004 1.004 47 H 0.065 0.935 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.240 -22.374 -3.396 31.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.024 4.024 4 C 0.001 3.999 5 N -0.135 5.135 6 C -0.038 4.038 7 C -0.258 4.258 8 C 0.383 3.617 9 O -0.453 6.453 10 N -0.323 5.323 11 C -0.054 4.054 12 C 0.053 3.947 13 C -0.162 4.162 14 C 0.019 3.981 15 N -0.330 5.330 16 C -0.401 4.401 17 H 0.082 0.918 18 C -0.238 4.238 19 N -0.577 5.577 20 Si 0.796 3.204 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.201 1.201 24 C 0.062 3.938 25 C -0.167 4.167 26 N -0.085 5.085 27 N -0.066 5.066 28 H 0.122 0.878 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.163 0.837 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.027 0.973 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.014 0.986 47 H 0.084 0.916 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.450 -22.366 -4.200 31.966 hybrid contribution 1.068 0.828 0.505 1.443 sum -21.381 -21.538 -3.695 30.573 Atomic orbital electron populations 1.22978 0.78608 1.04332 1.01004 1.87754 1.21996 1.26614 1.95696 1.22552 0.92172 0.85660 1.02057 1.22034 0.92819 0.76370 1.08699 1.50445 1.29685 1.13973 1.19364 1.23816 0.90679 0.93651 0.95663 1.21305 1.08080 0.96394 1.00055 1.17157 0.81006 0.81470 0.82032 1.90776 1.47440 1.76843 1.30238 1.47892 1.35412 1.09915 1.39077 1.21989 0.93819 1.00079 0.89551 1.20936 0.88493 0.90243 0.94995 1.22238 0.98093 0.95685 1.00169 1.20997 0.89800 0.96785 0.90499 1.44182 1.45747 1.02350 1.40683 1.19375 0.91411 0.85167 1.44194 0.91808 1.26095 0.95768 1.01074 1.00815 1.70155 0.98966 1.37162 1.51380 0.85348 0.76237 0.80082 0.78747 1.19861 1.22113 1.20115 1.20397 0.91812 0.88125 0.93514 1.22289 0.97770 0.98813 0.97877 1.74819 1.04251 1.19078 1.10384 1.81934 1.20904 0.91095 1.12643 0.87772 0.93096 0.93233 0.92198 0.92175 0.86284 0.83680 0.74601 0.92287 0.89331 0.90574 0.90717 0.90856 0.91106 0.97251 0.91972 0.94007 0.93641 0.98559 0.91610 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.40 -4.10 10.70 -148.98 -1.59 -5.69 16 3 C 0.05 0.47 6.14 71.98 0.44 0.92 16 4 C 0.12 0.84 6.91 86.38 0.60 1.44 16 5 N -0.35 -5.04 3.69 -347.10 -1.28 -6.32 16 6 C 0.12 1.95 11.28 83.85 0.95 2.90 16 7 C -0.12 -2.92 6.63 40.81 0.27 -2.65 16 8 C 0.60 18.50 7.66 86.69 0.66 19.16 16 9 O -0.57 -20.83 16.21 -4.01 -0.07 -20.89 16 10 N -0.59 -18.42 2.76 -825.65 -2.28 -20.70 16 11 C 0.09 2.28 8.34 127.77 1.07 3.35 16 12 C 0.16 5.66 2.47 45.12 0.11 5.77 16 13 C -0.12 -4.26 5.35 30.78 0.16 -4.10 16 14 C 0.15 6.23 6.50 86.36 0.56 6.79 16 15 N -0.61 -31.01 2.94 -699.09 -2.05 -33.06 16 16 C -0.27 -15.01 9.48 84.03 0.80 -14.21 16 17 H 0.06 3.42 7.86 -2.91 -0.02 3.40 16 18 C -0.04 -2.30 4.96 84.86 0.42 -1.88 16 19 N -0.93 -56.11 11.69 21.65 0.25 -55.86 16 20 Si 0.97 44.92 29.57 68.60 2.03 46.95 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 C 0.19 9.34 5.25 86.36 0.45 9.80 16 25 C -0.13 -5.03 5.34 30.67 0.16 -4.86 16 26 N -0.21 -5.22 9.03 -50.00 -0.45 -5.67 16 27 N -0.09 -1.82 13.65 37.02 0.51 -1.32 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.15 0.20 8.08 -2.39 -0.02 0.18 16 35 H 0.24 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 37 H 0.09 2.15 5.87 -2.39 -0.01 2.14 16 38 H 0.08 1.91 6.47 -2.39 -0.02 1.89 16 39 H 0.07 3.07 6.91 -2.39 -0.02 3.05 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.07 2.37 6.73 -2.39 -0.02 2.36 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.06 2.57 7.93 -2.38 -0.02 2.55 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.05 2.50 6.69 -2.39 -0.02 2.49 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.07 2.51 7.72 -2.39 -0.02 2.49 16 48 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -73.54 389.08 3.92 -69.61 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.96 Total: 9.12 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 7.91 Total: 23.83 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -5.31 Total: -122.92 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.66 Total: -26.59 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -73.54 3.92 -69.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005376879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.965 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds