Wall clock time and date at job start Tue Mar 31 2020 21:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99622 * 2 1 4 4 C 1.53005 * 109.46774 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47074 * 180.02562 * 4 3 2 6 6 C 1.34812 * 126.59401 * 124.99692 * 5 4 3 7 7 C 1.36591 * 106.84010 * 180.02562 * 6 5 4 8 8 C 1.47526 * 125.77390 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99867 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00441 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00490 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47539 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.49890 * 54.93211 * 12 11 10 14 14 C 1.53042 * 109.49896 * 175.00191 * 12 11 10 15 15 C 1.53043 * 109.53766 * 181.31449 * 14 12 11 16 16 C 1.53189 * 109.31023 * 298.63040 * 15 14 12 17 17 N 1.46928 * 108.77600 * 54.63861 * 16 15 14 18 18 C 1.36933 * 120.63321 * 126.41351 * 17 16 15 19 19 H 1.08002 * 119.99880 * 207.67165 * 18 17 16 20 20 C 1.38811 * 120.00122 * 27.66353 * 18 17 16 21 21 N 1.31617 * 119.99975 * 17.37590 * 20 18 17 22 22 Si 1.86798 * 120.00386 * 197.36851 * 20 18 17 23 23 H 1.48507 * 109.46809 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47229 * 119.99834 * 22 20 18 25 25 H 1.48494 * 109.47589 * 240.00677 * 22 20 18 26 26 C 1.46928 * 118.73889 * 306.38701 * 17 16 15 27 27 N 1.34401 * 108.46015 * 0.02562 * 7 6 5 28 28 N 1.28761 * 109.52255 * 359.97438 * 27 7 6 29 29 H 1.09007 * 109.46791 * 60.00176 * 1 2 3 30 30 H 1.08997 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47101 * 300.00188 * 1 2 3 32 32 H 1.08992 * 109.47227 * 60.00130 * 3 2 1 33 33 H 1.08995 * 109.47447 * 299.99425 * 3 2 1 34 34 H 1.08992 * 109.47114 * 60.00089 * 4 3 2 35 35 H 1.09003 * 109.46956 * 299.99752 * 4 3 2 36 36 H 1.08004 * 126.57839 * 0.26341 * 6 5 4 37 37 H 0.97006 * 119.99657 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47119 * 300.00031 * 11 10 8 39 39 H 1.09001 * 109.47151 * 59.99711 * 11 10 8 40 40 H 1.09003 * 109.45796 * 301.32996 * 14 12 11 41 41 H 1.08994 * 109.46215 * 61.30328 * 14 12 11 42 42 H 1.09001 * 109.49694 * 58.58401 * 15 14 12 43 43 H 1.09001 * 109.49621 * 178.64716 * 15 14 12 44 44 H 1.09004 * 109.58420 * 174.42107 * 16 15 14 45 45 H 1.09000 * 109.59240 * 294.85086 * 16 15 14 46 46 H 0.97000 * 120.00371 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.58512 * 293.82833 * 26 17 16 48 48 H 1.08994 * 109.59074 * 173.39598 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 5.0249 3.0046 0.8885 7 6 5.3056 4.2869 0.5111 8 6 6.2369 5.2033 1.1962 9 8 6.8326 4.8338 2.1898 10 7 6.4275 6.4499 0.7209 11 6 7.3527 7.3597 1.4009 12 6 7.3839 8.7002 0.6640 13 1 6.3706 9.0927 0.5799 14 6 8.2526 9.6909 1.4424 15 6 8.2579 11.0419 0.7233 16 6 8.8574 10.8687 -0.6758 17 7 8.1169 9.8130 -1.3802 18 6 7.5714 10.0479 -2.6140 19 1 6.6982 9.4975 -2.9320 20 6 8.1405 10.9934 -3.4560 21 7 9.3686 11.4139 -3.2386 22 14 7.1635 11.6689 -4.8977 23 1 5.8186 11.0394 -4.9226 24 1 7.0184 13.1396 -4.7517 25 1 7.8761 11.3651 -6.1645 26 6 7.9735 8.5004 -0.7358 27 7 4.5891 4.5733 -0.5894 28 7 3.8811 3.5499 -0.9202 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6437 -0.8891 35 1 3.8567 0.6440 0.8909 36 1 5.4420 2.4762 1.7331 37 1 5.9520 6.7448 -0.0715 38 1 7.0193 7.5171 2.4267 39 1 8.3520 6.9244 1.4065 40 1 7.8492 9.8161 2.4472 41 1 9.2716 9.3092 1.5051 42 1 7.2364 11.4127 0.6381 43 1 8.8572 11.7538 1.2908 44 1 8.7730 11.8048 -1.2279 45 1 9.9064 10.5850 -0.5914 46 1 9.7664 12.0744 -3.8272 47 1 8.9505 8.0237 -0.6561 48 1 7.3060 7.8739 -1.3274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023359763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:55 Heat of formation + Delta-G solvation = 31.446142 kcal Electronic energy + Delta-G solvation = -28595.206956 eV Core-core repulsion = 24495.098102 eV Total energy + Delta-G solvation = -4100.108854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.46960 -39.43500 -38.63319 -37.71239 -35.32294 -34.77991 -32.95720 -31.47137 -30.73709 -30.38896 -29.82684 -27.06224 -25.72871 -25.22253 -24.52020 -23.30687 -22.13150 -22.02578 -20.92107 -20.34461 -19.10769 -18.28435 -17.23112 -16.98466 -16.60067 -16.28571 -16.05009 -15.80028 -15.54035 -15.03046 -14.83134 -14.71478 -14.34066 -14.06965 -13.80404 -13.57642 -13.38765 -12.90334 -12.74706 -12.62575 -12.31120 -12.21699 -12.18303 -12.12880 -11.99565 -11.46595 -11.24081 -10.98129 -10.72507 -10.69012 -10.43968 -10.38348 -10.22613 -10.15396 -10.10222 -9.86362 -9.56357 -9.53972 -9.37636 -8.88524 -8.42686 -6.63393 -5.75004 -3.16986 0.83981 1.53378 1.56775 3.09629 3.20138 3.27563 3.40144 3.48167 3.50788 3.92635 4.02563 4.17574 4.48547 4.52227 4.53488 4.66744 4.73556 4.75453 4.84215 4.97135 5.10468 5.12320 5.17427 5.33852 5.47792 5.50668 5.55618 5.66550 5.86018 5.97071 5.97692 6.04014 6.27814 6.36200 6.37566 6.41274 6.52497 6.64576 6.73772 6.82551 6.89723 7.01204 7.43875 7.49885 7.71280 7.77646 7.84286 8.21762 8.48657 9.25275 9.88776 10.45287 11.33370 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.002206 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.284907 B =12689.859956 C =14364.348649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.097 3.903 7 C -0.097 4.097 8 C 0.602 3.398 9 O -0.546 6.546 10 N -0.705 5.705 11 C 0.127 3.873 12 C -0.118 4.118 13 H 0.074 0.926 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.153 3.847 27 N -0.196 5.196 28 N -0.062 5.062 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.207 0.793 37 H 0.412 0.588 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.252 0.748 47 H 0.019 0.981 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.570 -20.510 11.191 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.151 5.151 6 C -0.060 4.060 7 C -0.236 4.236 8 C 0.386 3.614 9 O -0.424 6.424 10 N -0.356 5.356 11 C 0.004 3.996 12 C -0.139 4.139 13 H 0.093 0.907 14 C -0.137 4.137 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.313 5.313 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.026 3.974 27 N -0.070 5.070 28 N -0.043 5.043 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.223 0.777 37 H 0.248 0.752 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.035 0.965 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.734 -20.438 10.523 26.779 hybrid contribution -0.385 0.299 -0.304 0.575 sum -14.119 -20.139 10.219 26.634 Atomic orbital electron populations 1.22813 0.79588 1.03307 1.00590 1.87778 1.20854 1.26448 1.95644 1.22630 0.91885 0.85809 1.02513 1.21683 0.93205 0.78037 1.06636 1.50311 1.30732 1.13557 1.20452 1.23383 0.92073 0.94868 0.95641 1.21561 1.07264 0.95654 0.99126 1.16718 0.80342 0.81284 0.83099 1.90797 1.49384 1.76356 1.25813 1.45889 1.45319 1.12585 1.31767 1.21534 0.92938 0.89369 0.95766 1.21965 1.00998 0.92842 0.98100 0.90729 1.21338 0.99142 0.96020 0.97212 1.22174 1.01148 0.95252 0.99536 1.20801 0.92365 0.94307 0.88220 1.44051 1.63705 1.06348 1.17233 1.19234 1.06487 1.20639 0.91611 0.91579 1.25031 0.95224 1.01849 0.97667 1.70051 1.11887 1.33377 1.39395 0.86243 0.79684 0.78741 0.82260 1.20200 1.21628 1.21797 1.20917 0.97147 0.88960 0.90393 1.74712 1.03588 1.18835 1.09848 1.82038 1.20238 0.90418 1.11595 0.93479 0.88993 0.93671 0.92287 0.91131 0.87273 0.86715 0.77669 0.75204 0.91675 0.91258 0.93428 0.92450 0.92741 0.93207 0.89540 0.96480 0.93754 0.96339 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.48 10.70 -35.23 -0.38 -2.86 16 3 C 0.05 0.29 6.14 37.16 0.23 0.52 16 4 C 0.13 0.65 6.91 -4.04 -0.03 0.63 16 5 N -0.36 -3.18 3.69 -61.06 -0.23 -3.41 16 6 C 0.10 0.89 11.27 -16.84 -0.19 0.70 16 7 C -0.10 -1.23 6.99 -83.55 -0.58 -1.82 16 8 C 0.60 8.74 7.82 -12.48 -0.10 8.65 16 9 O -0.55 -8.94 16.86 5.28 0.09 -8.85 16 10 N -0.71 -10.23 5.33 -61.35 -0.33 -10.56 16 11 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 12 C -0.12 -1.98 2.37 -90.50 -0.21 -2.19 16 13 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 14 C -0.10 -1.63 5.17 -26.69 -0.14 -1.77 16 15 C -0.14 -2.68 6.08 -26.61 -0.16 -2.85 16 16 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 17 N -0.59 -14.74 2.99 -172.31 -0.52 -15.25 16 18 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 19 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 21 N -0.90 -26.38 11.19 55.49 0.62 -25.76 16 22 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.15 3.15 5.60 -3.71 -0.02 3.13 16 27 N -0.20 -2.72 12.04 32.85 0.40 -2.33 16 28 N -0.06 -0.77 13.65 60.35 0.82 0.05 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.11 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.21 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.41 5.97 7.39 -40.82 -0.30 5.67 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 1.07 7.14 -51.93 -0.37 0.70 16 LS Contribution 396.63 15.07 5.98 5.98 Total: -1.00 -33.68 396.63 -6.65 -40.33 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.72 Total: 0.77 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -0.36 Total: 5.02 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.77 Total: -57.26 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.29 Total: -11.71 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.68 -6.65 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023359763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.779 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds