Wall clock time and date at job start Tue Mar 31 2020 21:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99622 * 2 1 4 4 C 1.53005 * 109.46774 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47074 * 180.02562 * 4 3 2 6 6 C 1.34812 * 126.59401 * 124.99692 * 5 4 3 7 7 C 1.36591 * 106.84010 * 180.02562 * 6 5 4 8 8 C 1.47526 * 125.77390 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99867 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00441 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00490 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47539 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.49890 * 54.93211 * 12 11 10 14 14 C 1.53042 * 109.49896 * 175.00191 * 12 11 10 15 15 C 1.53043 * 109.53766 * 181.31449 * 14 12 11 16 16 C 1.53189 * 109.31023 * 298.63040 * 15 14 12 17 17 N 1.46928 * 108.77600 * 54.63861 * 16 15 14 18 18 C 1.36933 * 120.63321 * 126.41351 * 17 16 15 19 19 H 1.08002 * 119.99880 * 207.67165 * 18 17 16 20 20 C 1.38811 * 120.00122 * 27.66353 * 18 17 16 21 21 N 1.31617 * 119.99975 * 17.37590 * 20 18 17 22 22 Si 1.86798 * 120.00386 * 197.36851 * 20 18 17 23 23 H 1.48507 * 109.46809 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47229 * 119.99834 * 22 20 18 25 25 H 1.48494 * 109.47589 * 240.00677 * 22 20 18 26 26 C 1.46928 * 118.73889 * 306.38701 * 17 16 15 27 27 N 1.34401 * 108.46015 * 0.02562 * 7 6 5 28 28 N 1.28761 * 109.52255 * 359.97438 * 27 7 6 29 29 H 1.09007 * 109.46791 * 60.00176 * 1 2 3 30 30 H 1.08997 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47101 * 300.00188 * 1 2 3 32 32 H 1.08992 * 109.47227 * 60.00130 * 3 2 1 33 33 H 1.08995 * 109.47447 * 299.99425 * 3 2 1 34 34 H 1.08992 * 109.47114 * 60.00089 * 4 3 2 35 35 H 1.09003 * 109.46956 * 299.99752 * 4 3 2 36 36 H 1.08004 * 126.57839 * 0.26341 * 6 5 4 37 37 H 0.97006 * 119.99657 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47119 * 300.00031 * 11 10 8 39 39 H 1.09001 * 109.47151 * 59.99711 * 11 10 8 40 40 H 1.09003 * 109.45796 * 301.32996 * 14 12 11 41 41 H 1.08994 * 109.46215 * 61.30328 * 14 12 11 42 42 H 1.09001 * 109.49694 * 58.58401 * 15 14 12 43 43 H 1.09001 * 109.49621 * 178.64716 * 15 14 12 44 44 H 1.09004 * 109.58420 * 174.42107 * 16 15 14 45 45 H 1.09000 * 109.59240 * 294.85086 * 16 15 14 46 46 H 0.97000 * 120.00371 * 179.97438 * 21 20 18 47 47 H 1.09004 * 109.58512 * 293.82833 * 26 17 16 48 48 H 1.08994 * 109.59074 * 173.39598 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5231 0.0013 6 6 5.0249 3.0046 0.8885 7 6 5.3056 4.2869 0.5111 8 6 6.2369 5.2033 1.1962 9 8 6.8326 4.8338 2.1898 10 7 6.4275 6.4499 0.7209 11 6 7.3527 7.3597 1.4009 12 6 7.3839 8.7002 0.6640 13 1 6.3706 9.0927 0.5799 14 6 8.2526 9.6909 1.4424 15 6 8.2579 11.0419 0.7233 16 6 8.8574 10.8687 -0.6758 17 7 8.1169 9.8130 -1.3802 18 6 7.5714 10.0479 -2.6140 19 1 6.6982 9.4975 -2.9320 20 6 8.1405 10.9934 -3.4560 21 7 9.3686 11.4139 -3.2386 22 14 7.1635 11.6689 -4.8977 23 1 5.8186 11.0394 -4.9226 24 1 7.0184 13.1396 -4.7517 25 1 7.8761 11.3651 -6.1645 26 6 7.9735 8.5004 -0.7358 27 7 4.5891 4.5733 -0.5894 28 7 3.8811 3.5499 -0.9202 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8574 0.6437 -0.8891 35 1 3.8567 0.6440 0.8909 36 1 5.4420 2.4762 1.7331 37 1 5.9520 6.7448 -0.0715 38 1 7.0193 7.5171 2.4267 39 1 8.3520 6.9244 1.4065 40 1 7.8492 9.8161 2.4472 41 1 9.2716 9.3092 1.5051 42 1 7.2364 11.4127 0.6381 43 1 8.8572 11.7538 1.2908 44 1 8.7730 11.8048 -1.2279 45 1 9.9064 10.5850 -0.5914 46 1 9.7664 12.0744 -3.8272 47 1 8.9505 8.0237 -0.6561 48 1 7.3060 7.8739 -1.3274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023359763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:54 Heat of formation + Delta-G solvation = 7.013035 kcal Electronic energy + Delta-G solvation = -28596.266455 eV Core-core repulsion = 24495.098102 eV Total energy + Delta-G solvation = -4101.168353 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.29898 -40.60060 -39.28090 -39.05818 -36.28517 -35.95397 -34.64078 -32.42015 -32.26689 -31.87256 -30.76649 -27.53782 -27.25554 -26.88870 -25.12550 -24.38737 -23.75094 -22.83250 -22.41528 -21.41741 -20.60689 -19.18474 -18.61360 -17.81915 -17.52449 -17.07980 -16.93819 -16.85417 -16.57153 -16.36107 -15.95573 -15.66907 -15.54995 -15.31686 -15.04996 -14.92857 -14.56820 -14.47574 -13.99814 -13.72808 -13.57305 -13.47024 -13.21881 -12.99995 -12.89180 -12.79319 -12.51805 -12.42579 -12.23382 -12.15429 -11.94683 -11.79878 -11.56202 -11.44113 -11.42325 -11.13131 -11.04240 -10.80409 -10.53176 -10.46041 -10.01816 -8.66437 -7.86182 -5.31016 0.08849 0.58445 0.91063 1.45605 1.47559 1.58309 2.14496 2.23207 2.51591 2.65721 3.16353 3.27956 3.45006 3.61317 3.74251 3.78250 3.93061 4.01039 4.04466 4.08678 4.10579 4.18554 4.43064 4.44121 4.46731 4.52577 4.59025 4.60338 4.64892 4.76891 4.80279 4.83808 4.91455 4.93606 5.03702 5.13892 5.24278 5.34496 5.36001 5.40360 5.48489 5.59143 5.68889 5.81115 5.97727 6.39021 6.42152 6.85200 7.11140 7.16454 7.88084 8.39207 9.19910 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.002206 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.284907 B =12689.859956 C =14364.348649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.350 5.350 6 C 0.121 3.879 7 C -0.125 4.125 8 C 0.605 3.395 9 O -0.566 6.566 10 N -0.709 5.709 11 C 0.138 3.862 12 C -0.102 4.102 13 H 0.073 0.927 14 C -0.095 4.095 15 C -0.131 4.131 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.066 0.934 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.152 3.848 27 N -0.225 5.225 28 N -0.088 5.088 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.244 0.756 37 H 0.411 0.589 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.071 0.929 44 H 0.051 0.949 45 H -0.006 1.006 46 H 0.249 0.751 47 H 0.009 0.991 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 -22.289 12.992 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.025 4.025 4 C 0.001 3.999 5 N -0.136 5.136 6 C -0.036 4.036 7 C -0.265 4.265 8 C 0.390 3.610 9 O -0.446 6.446 10 N -0.359 5.359 11 C 0.014 3.986 12 C -0.122 4.122 13 H 0.091 0.909 14 C -0.133 4.133 15 C -0.170 4.170 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.389 4.389 19 H 0.083 0.917 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.221 1.221 26 C 0.026 3.974 27 N -0.098 5.098 28 N -0.068 5.068 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.168 0.832 36 H 0.260 0.740 37 H 0.247 0.753 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.012 0.988 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.110 -22.250 12.324 29.585 hybrid contribution 0.003 0.713 -0.857 1.115 sum -15.106 -21.537 11.467 28.698 Atomic orbital electron populations 1.22981 0.78630 1.04365 1.00964 1.87752 1.21974 1.26532 1.95690 1.22557 0.92322 0.85683 1.01978 1.22048 0.92714 0.76328 1.08819 1.50506 1.29960 1.13914 1.19201 1.23905 0.90568 0.93590 0.95547 1.21516 1.08214 0.96923 0.99801 1.16884 0.80169 0.81190 0.82773 1.90776 1.50364 1.76708 1.26705 1.45909 1.45286 1.12893 1.31770 1.21387 0.93008 0.88076 0.96120 1.21727 1.00484 0.94347 0.95667 0.90868 1.21332 0.99450 0.94073 0.98462 1.22008 1.00757 0.97537 0.96686 1.20648 0.91569 0.92418 0.90664 1.44313 1.63675 1.08193 1.17047 1.19537 1.06362 1.20358 0.92618 0.91659 1.25776 0.96101 1.02543 1.00411 1.70200 1.13340 1.34061 1.40525 0.85244 0.78635 0.77835 0.78983 1.19144 1.21582 1.22063 1.21024 0.96816 0.87012 0.92547 1.74684 1.04406 1.19978 1.10743 1.81961 1.20751 0.91147 1.12950 0.93434 0.87665 0.93011 0.92086 0.92516 0.86409 0.83245 0.73955 0.75344 0.89985 0.91650 0.89808 0.92312 0.92986 0.91050 0.93058 0.98785 0.94190 0.97347 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.43 16 2 O -0.40 -4.40 10.70 -148.98 -1.59 -6.00 16 3 C 0.05 0.52 6.14 71.98 0.44 0.97 16 4 C 0.12 0.93 6.91 86.38 0.60 1.52 16 5 N -0.35 -5.39 3.69 -347.09 -1.28 -6.67 16 6 C 0.12 1.92 11.27 83.85 0.95 2.86 16 7 C -0.12 -3.03 6.99 40.82 0.29 -2.74 16 8 C 0.60 16.85 7.82 86.69 0.68 17.53 16 9 O -0.57 -17.55 16.86 -4.04 -0.07 -17.62 16 10 N -0.71 -19.93 5.33 -466.28 -2.48 -22.42 16 11 C 0.14 3.81 5.07 86.38 0.44 4.25 16 12 C -0.10 -3.27 2.37 -10.71 -0.03 -3.29 16 13 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 15 C -0.13 -4.80 6.08 30.67 0.19 -4.62 16 16 C 0.17 8.42 5.31 86.36 0.46 8.88 16 17 N -0.61 -30.97 2.99 -699.08 -2.09 -33.06 16 18 C -0.26 -14.49 9.58 84.03 0.81 -13.68 16 19 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 20 C -0.05 -3.03 4.91 84.86 0.42 -2.62 16 21 N -0.93 -56.40 11.19 21.65 0.24 -56.16 16 22 Si 0.96 45.92 29.59 68.60 2.03 47.95 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 C 0.15 6.30 5.60 86.36 0.48 6.78 16 27 N -0.22 -6.18 12.04 -50.00 -0.60 -6.78 16 28 N -0.09 -2.11 13.65 37.02 0.51 -1.61 16 29 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.15 0.17 8.08 -2.39 -0.02 0.15 16 36 H 0.24 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.41 11.83 7.39 -92.70 -0.69 11.15 16 38 H 0.08 2.05 8.14 -2.38 -0.02 2.04 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.05 2.85 6.04 -2.38 -0.01 2.83 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 47 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 48 H 0.05 2.04 7.14 -2.39 -0.02 2.02 16 Total: -1.00 -74.94 396.63 2.05 -72.90 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.28 Total: 14.94 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 7.12 Total: 14.53 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -5.71 Total: -126.70 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -1.66 Total: -23.62 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.94 2.05 -72.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023359763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.911 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds