Wall clock time and date at job start Tue Mar 31 2020 21:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99613 * 2 1 4 4 C 1.53004 * 109.47129 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47367 * 179.97438 * 4 3 2 6 6 C 1.34816 * 126.59617 * 125.27573 * 5 4 3 7 7 C 1.36587 * 106.84143 * 180.10916 * 6 5 4 8 8 C 1.47522 * 125.77369 * 179.89781 * 7 6 5 9 9 O 1.21596 * 119.99966 * 359.71192 * 8 7 6 10 10 N 1.34775 * 120.00096 * 179.71109 * 8 7 6 11 11 C 1.46499 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47198 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.52492 * 305.08614 * 12 11 10 14 14 C 1.53041 * 109.49962 * 185.00501 * 12 11 10 15 15 C 1.53037 * 109.53035 * 178.67831 * 14 12 11 16 16 C 1.53195 * 109.31561 * 61.36820 * 15 14 12 17 17 N 1.46925 * 108.77578 * 305.37246 * 16 15 14 18 18 C 1.36937 * 120.63104 * 233.63045 * 17 16 15 19 19 H 1.07999 * 120.00511 * 151.83523 * 18 17 16 20 20 C 1.38820 * 119.99588 * 331.82887 * 18 17 16 21 21 N 1.31615 * 119.99827 * 343.07737 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 163.07532 * 20 18 17 23 23 H 1.48499 * 109.47331 * 60.00031 * 22 20 18 24 24 H 1.48500 * 109.46947 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47173 * 299.99718 * 22 20 18 26 26 C 1.46928 * 118.74189 * 53.60084 * 17 16 15 27 27 N 1.34412 * 108.45959 * 359.62918 * 7 6 5 28 28 N 1.28763 * 109.51728 * 0.23224 * 27 7 6 29 29 H 1.08999 * 109.46629 * 60.00593 * 1 2 3 30 30 H 1.09005 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47546 * 300.00348 * 1 2 3 32 32 H 1.09002 * 109.47578 * 60.00203 * 3 2 1 33 33 H 1.09001 * 109.47050 * 299.99162 * 3 2 1 34 34 H 1.09005 * 109.46980 * 59.99517 * 4 3 2 35 35 H 1.09007 * 109.47006 * 299.99773 * 4 3 2 36 36 H 1.07998 * 126.57863 * 359.96178 * 6 5 4 37 37 H 0.96997 * 119.99987 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.46831 * 60.00317 * 11 10 8 39 39 H 1.09000 * 109.47762 * 300.00350 * 11 10 8 40 40 H 1.09002 * 109.46085 * 58.66573 * 14 12 11 41 41 H 1.09000 * 109.45785 * 298.69006 * 14 12 11 42 42 H 1.08997 * 109.50332 * 181.32114 * 15 14 12 43 43 H 1.09001 * 109.49940 * 301.42255 * 15 14 12 44 44 H 1.09001 * 109.58279 * 65.14924 * 16 15 14 45 45 H 1.08996 * 109.59123 * 185.43548 * 16 15 14 46 46 H 0.97000 * 119.99811 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.58728 * 66.18274 * 26 17 16 48 48 H 1.09003 * 109.58835 * 186.46607 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0289 3.0037 0.8837 7 6 5.3064 4.2871 0.5075 8 6 6.2390 5.2034 1.1907 9 8 6.8354 4.8346 2.1842 10 7 6.4301 6.4494 0.7138 11 6 7.3559 7.3596 1.3926 12 6 7.3876 8.6991 0.6540 13 1 7.6328 8.5311 -0.3947 14 6 8.4451 9.6065 1.2868 15 6 8.5003 10.9343 0.5279 16 6 7.1407 11.6328 0.6291 17 7 6.0989 10.7106 0.1568 18 6 5.2230 11.0911 -0.8246 19 1 4.7870 10.3488 -1.4768 20 6 4.8953 12.4309 -0.9810 21 7 5.1438 13.2866 -0.0123 22 14 4.1017 13.0193 -2.5663 23 1 2.8134 12.3090 -2.7684 24 1 3.8537 14.4811 -2.4828 25 1 5.0077 12.7360 -3.7083 26 6 6.0152 9.3721 0.7570 27 7 4.5906 4.5720 -0.5938 28 7 3.8820 3.5485 -0.9231 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 3.8574 0.6436 -0.8891 35 1 3.8567 0.6440 0.8909 36 1 5.4464 2.4760 1.7285 37 1 5.9541 6.7438 -0.0785 38 1 8.3550 6.9237 1.3985 39 1 7.0228 7.5185 2.4182 40 1 9.4187 9.1190 1.2370 41 1 8.1858 9.7944 2.3288 42 1 9.2698 11.5711 0.9642 43 1 8.7349 10.7451 -0.5196 44 1 6.9455 11.9038 1.6667 45 1 7.1442 12.5307 0.0113 46 1 4.9144 14.2227 -0.1214 47 1 5.7283 9.4588 1.8050 48 1 5.2736 8.7779 0.2231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023359764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:00 Heat of formation + Delta-G solvation = 31.306744 kcal Electronic energy + Delta-G solvation = -28624.097963 eV Core-core repulsion = 24523.983064 eV Total energy + Delta-G solvation = -4100.114899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.46779 -39.43395 -38.61546 -37.71036 -35.31823 -34.77704 -32.95494 -31.46951 -30.73273 -30.38743 -29.82355 -27.04400 -25.72647 -25.21946 -24.50881 -23.30503 -22.12861 -22.02303 -20.91894 -20.34352 -19.10588 -18.28302 -17.21045 -16.98197 -16.60314 -16.26850 -16.04832 -15.78795 -15.53441 -15.04516 -14.80510 -14.72767 -14.32593 -14.01209 -13.90006 -13.53961 -13.38241 -12.90175 -12.73510 -12.61682 -12.29698 -12.22444 -12.16999 -12.13003 -11.97928 -11.46385 -11.24338 -10.96710 -10.72205 -10.66771 -10.46452 -10.36340 -10.23792 -10.16701 -10.10734 -9.86405 -9.56387 -9.53600 -9.38335 -8.88380 -8.42098 -6.62679 -5.74944 -3.17516 0.84027 1.53881 1.56706 3.10908 3.20696 3.27285 3.41776 3.46963 3.48763 3.93174 4.02697 4.19093 4.49317 4.52340 4.53768 4.67716 4.75380 4.77189 4.85906 4.98707 5.12195 5.13141 5.17883 5.34044 5.47829 5.50801 5.55746 5.66780 5.86162 5.97280 5.97876 6.04132 6.27897 6.36365 6.39316 6.41393 6.52547 6.64660 6.73958 6.82688 6.89849 7.01321 7.43697 7.49999 7.71272 7.77742 7.83648 8.21882 8.49027 9.25393 9.88703 10.45563 11.33444 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.002301 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.201870 B =12165.055556 C =14094.522597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.049 3.951 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.097 3.903 7 C -0.097 4.097 8 C 0.602 3.398 9 O -0.546 6.546 10 N -0.705 5.705 11 C 0.127 3.873 12 C -0.118 4.118 13 H 0.074 0.926 14 C -0.099 4.099 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.153 3.847 27 N -0.196 5.196 28 N -0.062 5.062 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.207 0.793 37 H 0.412 0.588 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.017 0.983 45 H 0.086 0.914 46 H 0.254 0.746 47 H 0.018 0.982 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -25.532 2.435 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.151 5.151 6 C -0.060 4.060 7 C -0.236 4.236 8 C 0.386 3.614 9 O -0.423 6.423 10 N -0.356 5.356 11 C 0.004 3.996 12 C -0.139 4.139 13 H 0.093 0.907 14 C -0.137 4.137 15 C -0.181 4.181 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.026 3.974 27 N -0.070 5.070 28 N -0.043 5.043 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.223 0.777 37 H 0.248 0.752 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.035 0.965 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.442 -25.377 1.896 25.564 hybrid contribution -0.440 0.296 -0.283 0.601 sum -2.882 -25.081 1.613 25.297 Atomic orbital electron populations 1.22815 0.79553 1.03290 1.00651 1.87769 1.20885 1.26450 1.95656 1.22633 0.91841 0.85817 1.02601 1.21681 0.93267 0.78012 1.06568 1.50310 1.30525 1.13602 1.20620 1.23380 0.92015 0.94889 0.95683 1.21563 1.07274 0.95541 0.99227 1.16717 0.80348 0.81301 0.83077 1.90795 1.49427 1.76436 1.25687 1.45888 1.45380 1.12495 1.31796 1.21534 0.92437 0.89006 0.96631 1.21963 0.99728 0.92512 0.99705 0.90720 1.21337 0.96749 0.96186 0.99431 1.22176 1.00527 0.96010 0.99416 1.20786 0.83662 0.93353 0.97839 1.44021 1.33666 1.10446 1.43163 1.19147 1.20343 0.92046 1.06642 0.91707 1.25042 0.99494 0.97478 0.97645 1.70028 1.51278 1.03087 1.30332 0.86375 0.79316 0.77469 0.83654 1.20874 1.21703 1.21040 1.20914 0.92486 0.87802 0.96193 1.74718 1.03565 1.18682 1.10021 1.82036 1.20201 0.90507 1.11545 0.93464 0.89004 0.93625 0.92207 0.91119 0.87340 0.86714 0.77673 0.75205 0.91657 0.91275 0.93418 0.92456 0.93211 0.92735 0.96495 0.89603 0.93640 0.96373 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.56 10.70 -35.23 -0.38 -2.94 16 3 C 0.05 0.30 6.14 37.16 0.23 0.53 16 4 C 0.13 0.66 6.91 -4.04 -0.03 0.63 16 5 N -0.36 -3.19 3.69 -61.06 -0.23 -3.41 16 6 C 0.10 0.89 11.27 -16.84 -0.19 0.70 16 7 C -0.10 -1.23 6.99 -83.55 -0.58 -1.82 16 8 C 0.60 8.75 7.82 -12.48 -0.10 8.65 16 9 O -0.55 -8.95 16.86 5.28 0.09 -8.86 16 10 N -0.71 -10.24 5.33 -61.35 -0.33 -10.57 16 11 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 12 C -0.12 -1.98 2.37 -90.50 -0.21 -2.20 16 13 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 14 C -0.10 -1.63 5.17 -26.69 -0.14 -1.77 16 15 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 16 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 17 N -0.59 -14.73 2.99 -172.31 -0.52 -15.25 16 18 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -26.36 11.19 55.49 0.62 -25.74 16 22 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.15 3.15 5.60 -3.71 -0.02 3.13 16 27 N -0.20 -2.72 12.04 32.85 0.40 -2.33 16 28 N -0.06 -0.77 13.65 60.35 0.82 0.05 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.31 8.08 -51.92 -0.42 -0.11 16 36 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.41 5.97 7.39 -40.82 -0.30 5.67 16 38 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.05 1.07 7.15 -51.93 -0.37 0.69 16 LS Contribution 396.67 15.07 5.98 5.98 Total: -1.00 -33.58 396.67 -6.65 -40.24 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.72 Total: 0.93 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.36 Total: 5.04 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.77 Total: -57.25 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.29 Total: -11.80 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.58 -6.65 -40.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023359764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.543 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds