Wall clock time and date at job start Tue Mar 31 2020 21:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99613 * 2 1 4 4 C 1.53004 * 109.47129 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47367 * 179.97438 * 4 3 2 6 6 C 1.34816 * 126.59617 * 125.27573 * 5 4 3 7 7 C 1.36587 * 106.84143 * 180.10916 * 6 5 4 8 8 C 1.47522 * 125.77369 * 179.89781 * 7 6 5 9 9 O 1.21596 * 119.99966 * 359.71192 * 8 7 6 10 10 N 1.34775 * 120.00096 * 179.71109 * 8 7 6 11 11 C 1.46499 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47198 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.52492 * 305.08614 * 12 11 10 14 14 C 1.53041 * 109.49962 * 185.00501 * 12 11 10 15 15 C 1.53037 * 109.53035 * 178.67831 * 14 12 11 16 16 C 1.53195 * 109.31561 * 61.36820 * 15 14 12 17 17 N 1.46925 * 108.77578 * 305.37246 * 16 15 14 18 18 C 1.36937 * 120.63104 * 233.63045 * 17 16 15 19 19 H 1.07999 * 120.00511 * 151.83523 * 18 17 16 20 20 C 1.38820 * 119.99588 * 331.82887 * 18 17 16 21 21 N 1.31615 * 119.99827 * 343.07737 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 163.07532 * 20 18 17 23 23 H 1.48499 * 109.47331 * 60.00031 * 22 20 18 24 24 H 1.48500 * 109.46947 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47173 * 299.99718 * 22 20 18 26 26 C 1.46928 * 118.74189 * 53.60084 * 17 16 15 27 27 N 1.34412 * 108.45959 * 359.62918 * 7 6 5 28 28 N 1.28763 * 109.51728 * 0.23224 * 27 7 6 29 29 H 1.08999 * 109.46629 * 60.00593 * 1 2 3 30 30 H 1.09005 * 109.47019 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47546 * 300.00348 * 1 2 3 32 32 H 1.09002 * 109.47578 * 60.00203 * 3 2 1 33 33 H 1.09001 * 109.47050 * 299.99162 * 3 2 1 34 34 H 1.09005 * 109.46980 * 59.99517 * 4 3 2 35 35 H 1.09007 * 109.47006 * 299.99773 * 4 3 2 36 36 H 1.07998 * 126.57863 * 359.96178 * 6 5 4 37 37 H 0.96997 * 119.99987 * 0.02562 * 10 8 7 38 38 H 1.09007 * 109.46831 * 60.00317 * 11 10 8 39 39 H 1.09000 * 109.47762 * 300.00350 * 11 10 8 40 40 H 1.09002 * 109.46085 * 58.66573 * 14 12 11 41 41 H 1.09000 * 109.45785 * 298.69006 * 14 12 11 42 42 H 1.08997 * 109.50332 * 181.32114 * 15 14 12 43 43 H 1.09001 * 109.49940 * 301.42255 * 15 14 12 44 44 H 1.09001 * 109.58279 * 65.14924 * 16 15 14 45 45 H 1.08996 * 109.59123 * 185.43548 * 16 15 14 46 46 H 0.97000 * 119.99811 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.58728 * 66.18274 * 26 17 16 48 48 H 1.09003 * 109.58835 * 186.46607 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0289 3.0037 0.8837 7 6 5.3064 4.2871 0.5075 8 6 6.2390 5.2034 1.1907 9 8 6.8354 4.8346 2.1842 10 7 6.4301 6.4494 0.7138 11 6 7.3559 7.3596 1.3926 12 6 7.3876 8.6991 0.6540 13 1 7.6328 8.5311 -0.3947 14 6 8.4451 9.6065 1.2868 15 6 8.5003 10.9343 0.5279 16 6 7.1407 11.6328 0.6291 17 7 6.0989 10.7106 0.1568 18 6 5.2230 11.0911 -0.8246 19 1 4.7870 10.3488 -1.4768 20 6 4.8953 12.4309 -0.9810 21 7 5.1438 13.2866 -0.0123 22 14 4.1017 13.0193 -2.5663 23 1 2.8134 12.3090 -2.7684 24 1 3.8537 14.4811 -2.4828 25 1 5.0077 12.7360 -3.7083 26 6 6.0152 9.3721 0.7570 27 7 4.5906 4.5720 -0.5938 28 7 3.8820 3.5485 -0.9231 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8901 34 1 3.8574 0.6436 -0.8891 35 1 3.8567 0.6440 0.8909 36 1 5.4464 2.4760 1.7285 37 1 5.9541 6.7438 -0.0785 38 1 8.3550 6.9237 1.3985 39 1 7.0228 7.5185 2.4182 40 1 9.4187 9.1190 1.2370 41 1 8.1858 9.7944 2.3288 42 1 9.2698 11.5711 0.9642 43 1 8.7349 10.7451 -0.5196 44 1 6.9455 11.9038 1.6667 45 1 7.1442 12.5307 0.0113 46 1 4.9144 14.2227 -0.1214 47 1 5.7283 9.4588 1.8050 48 1 5.2736 8.7779 0.2231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023359764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:59 Heat of formation + Delta-G solvation = 6.965625 kcal Electronic energy + Delta-G solvation = -28625.153473 eV Core-core repulsion = 24523.983064 eV Total energy + Delta-G solvation = -4101.170409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.29831 -40.60107 -39.27989 -39.06170 -36.28308 -35.95333 -34.63981 -32.42097 -32.26508 -31.87397 -30.76857 -27.54141 -27.25207 -26.88873 -25.12747 -24.38742 -23.74908 -22.83252 -22.41433 -21.41825 -20.60692 -19.18690 -18.60939 -17.81765 -17.53353 -17.08176 -16.96358 -16.80915 -16.58116 -16.37561 -15.91799 -15.75539 -15.52207 -15.27058 -15.03829 -14.98396 -14.53810 -14.48989 -13.98795 -13.72599 -13.58282 -13.46045 -13.22473 -13.01043 -12.85158 -12.79235 -12.48405 -12.43171 -12.29783 -12.15673 -11.97253 -11.79770 -11.56098 -11.44044 -11.42163 -11.13217 -11.04542 -10.81063 -10.51897 -10.46015 -10.01836 -8.65571 -7.85954 -5.31410 0.08770 0.58418 0.91158 1.46782 1.48947 1.55700 2.14677 2.23069 2.51796 2.65073 3.16306 3.28204 3.44889 3.61429 3.74107 3.78241 3.93064 4.01152 4.04430 4.08538 4.10533 4.18307 4.42661 4.43988 4.46332 4.52299 4.58786 4.60255 4.64837 4.76725 4.80070 4.83211 4.91502 4.93544 5.03637 5.13861 5.24237 5.34524 5.36040 5.40332 5.48433 5.58796 5.68638 5.81161 5.96790 6.39123 6.42233 6.85178 7.11119 7.16676 7.88168 8.39610 9.19897 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.002301 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.201870 B =12165.055556 C =14094.522597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.350 5.350 6 C 0.121 3.879 7 C -0.125 4.125 8 C 0.605 3.395 9 O -0.566 6.566 10 N -0.709 5.709 11 C 0.138 3.862 12 C -0.102 4.102 13 H 0.073 0.927 14 C -0.095 4.095 15 C -0.131 4.131 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.065 0.935 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.278 1.278 26 C 0.152 3.848 27 N -0.225 5.225 28 N -0.088 5.088 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.150 0.850 36 H 0.244 0.756 37 H 0.411 0.589 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.051 0.949 44 H -0.006 1.006 45 H 0.051 0.949 46 H 0.249 0.751 47 H 0.008 0.992 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -28.256 2.610 28.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.002 3.998 5 N -0.136 5.136 6 C -0.036 4.036 7 C -0.265 4.265 8 C 0.390 3.610 9 O -0.445 6.445 10 N -0.359 5.359 11 C 0.014 3.986 12 C -0.122 4.122 13 H 0.091 0.909 14 C -0.133 4.133 15 C -0.170 4.170 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.794 3.206 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.204 1.204 26 C 0.026 3.974 27 N -0.098 5.098 28 N -0.068 5.068 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.168 0.832 36 H 0.260 0.740 37 H 0.247 0.753 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.012 0.988 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.026 0.974 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.690 -28.145 2.051 28.270 hybrid contribution -0.760 1.027 -0.290 1.310 sum -2.450 -27.117 1.761 27.285 Atomic orbital electron populations 1.22981 0.78669 1.04381 1.00922 1.87745 1.21925 1.26476 1.95683 1.22565 0.92499 0.85693 1.01903 1.22046 0.92546 0.76322 1.08899 1.50506 1.29750 1.13965 1.19373 1.23903 0.90530 0.93609 0.95560 1.21518 1.08218 0.96808 0.99918 1.16883 0.80181 0.81217 0.82733 1.90774 1.50414 1.76814 1.26542 1.45909 1.45427 1.12755 1.31771 1.21386 0.93387 0.87906 0.95908 1.21726 0.97108 0.93312 1.00081 0.90892 1.21331 0.98372 0.94757 0.98852 1.22010 0.97658 0.97349 0.99988 1.20636 0.86321 0.92821 0.95475 1.44287 1.33785 1.11940 1.43205 1.19467 1.20247 0.92285 1.07186 0.91720 1.25791 1.00732 0.97694 1.00484 1.70184 1.52852 1.02964 1.32069 0.85371 0.78591 0.76560 0.80116 1.20256 1.22004 1.20393 1.21021 0.95141 0.86154 0.95053 1.74690 1.04374 1.19810 1.10943 1.81959 1.20700 0.91230 1.12912 0.93427 0.87572 0.93165 0.92329 0.92521 0.86177 0.83244 0.73952 0.75347 0.89981 0.91649 0.89810 0.92299 0.91041 0.93020 0.98788 0.93104 0.94162 0.97375 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -4.56 10.70 -148.98 -1.59 -6.16 16 3 C 0.05 0.54 6.14 71.98 0.44 0.99 16 4 C 0.12 0.93 6.91 86.38 0.60 1.53 16 5 N -0.35 -5.39 3.69 -347.09 -1.28 -6.67 16 6 C 0.12 1.92 11.27 83.85 0.95 2.87 16 7 C -0.12 -3.03 6.99 40.81 0.29 -2.75 16 8 C 0.60 16.87 7.82 86.69 0.68 17.55 16 9 O -0.57 -17.57 16.86 -4.02 -0.07 -17.63 16 10 N -0.71 -19.97 5.33 -466.28 -2.48 -22.46 16 11 C 0.14 3.82 5.07 86.38 0.44 4.26 16 12 C -0.10 -3.28 2.37 -10.72 -0.03 -3.30 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C -0.10 -2.91 5.17 30.62 0.16 -2.76 16 15 C -0.13 -4.82 6.08 30.67 0.19 -4.63 16 16 C 0.17 8.45 5.30 86.36 0.46 8.91 16 17 N -0.61 -30.99 2.99 -699.07 -2.09 -33.08 16 18 C -0.26 -14.66 9.58 84.04 0.81 -13.86 16 19 H 0.07 3.55 7.88 -2.91 -0.02 3.52 16 20 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 21 N -0.93 -56.32 11.19 21.65 0.24 -56.08 16 22 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 26 C 0.15 6.32 5.60 86.36 0.48 6.80 16 27 N -0.22 -6.19 12.04 -49.99 -0.60 -6.79 16 28 N -0.09 -2.11 13.65 37.02 0.51 -1.60 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.15 0.17 8.08 -2.38 -0.02 0.15 16 36 H 0.24 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.41 11.85 7.39 -92.71 -0.69 11.17 16 38 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 44 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 46 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.05 2.04 7.15 -2.39 -0.02 2.02 16 Total: -1.00 -74.76 396.67 2.05 -72.72 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.28 Total: 15.36 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 7.12 Total: 14.52 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.71 Total: -126.69 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.66 Total: -23.79 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.76 2.05 -72.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023359764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.682 kcal (2) G-P(sol) polarization free energy of solvation -74.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds