Wall clock time and date at job start Tue Mar 31 2020 21:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00078 * 2 1 4 4 C 1.53000 * 109.47055 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.34817 * 126.59418 * 124.99977 * 5 4 3 7 7 C 1.36595 * 106.83595 * 179.97438 * 6 5 4 8 8 C 1.47530 * 125.76852 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99707 * 354.34284 * 8 7 6 10 10 N 1.34767 * 119.99937 * 174.33969 * 8 7 6 11 11 C 1.46924 * 120.63319 * 3.23225 * 10 8 7 12 12 C 1.52769 * 109.00967 * 233.58346 * 11 10 8 13 13 C 1.53042 * 109.38167 * 305.58545 * 12 11 10 14 14 C 1.53045 * 109.53755 * 61.23967 * 13 12 11 15 15 H 1.09003 * 109.52105 * 58.59864 * 14 13 12 16 16 N 1.46491 * 109.49654 * 178.67971 * 14 13 12 17 17 C 1.46500 * 119.99965 * 59.84212 * 16 14 13 18 18 C 1.36936 * 120.00504 * 239.83525 * 16 14 13 19 19 H 1.07997 * 119.99946 * 319.58341 * 18 16 14 20 20 C 1.38809 * 120.00191 * 139.57631 * 18 16 14 21 21 N 1.31615 * 120.00043 * 161.47345 * 20 18 16 22 22 Si 1.86803 * 119.99964 * 341.47137 * 20 18 16 23 23 H 1.48491 * 109.47349 * 95.33562 * 22 20 18 24 24 H 1.48504 * 109.47059 * 215.33448 * 22 20 18 25 25 H 1.48505 * 109.47018 * 335.33430 * 22 20 18 26 26 C 1.46926 * 120.63116 * 183.50989 * 10 8 7 27 27 N 1.34394 * 108.46043 * 0.02562 * 7 6 5 28 28 N 1.28760 * 109.52325 * 359.70765 * 27 7 6 29 29 H 1.09000 * 109.46859 * 60.00032 * 1 2 3 30 30 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47215 * 299.99969 * 1 2 3 32 32 H 1.08997 * 109.47415 * 300.00009 * 3 2 1 33 33 H 1.09000 * 109.47058 * 60.00002 * 3 2 1 34 34 H 1.09003 * 109.47263 * 299.99940 * 4 3 2 35 35 H 1.09000 * 109.47284 * 60.00020 * 4 3 2 36 36 H 1.07997 * 126.58160 * 359.97438 * 6 5 4 37 37 H 1.09003 * 109.58348 * 353.41482 * 11 10 8 38 38 H 1.09002 * 109.58886 * 113.84578 * 11 10 8 39 39 H 1.09002 * 109.56109 * 185.54977 * 12 11 10 40 40 H 1.08999 * 109.38595 * 65.51367 * 12 11 10 41 41 H 1.09000 * 109.46048 * 301.22326 * 13 12 11 42 42 H 1.08997 * 109.45526 * 181.25934 * 13 12 11 43 43 H 1.09003 * 109.47579 * 86.08527 * 17 16 14 44 44 H 1.08999 * 109.47253 * 206.08669 * 17 16 14 45 45 H 1.08999 * 109.47060 * 326.08446 * 17 16 14 46 46 H 0.97001 * 120.00069 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.58835 * 246.15857 * 26 10 8 48 48 H 1.09001 * 109.58734 * 6.58322 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0257 3.0042 0.8866 7 6 5.3069 4.2864 0.5087 8 6 6.2391 5.2023 1.1932 9 8 6.7567 4.8707 2.2423 10 7 6.5170 6.4065 0.6556 11 6 5.8462 6.8503 -0.5739 12 6 6.9037 7.2585 -1.5982 13 6 7.8350 8.3026 -0.9780 14 6 8.5441 7.6989 0.2366 15 1 9.1076 6.8181 -0.0713 16 7 9.4588 8.6887 0.8106 17 6 8.9399 9.9682 1.3004 18 6 10.7988 8.4180 0.8896 19 1 11.1346 7.4311 1.1716 20 6 11.7255 9.4121 0.6070 21 7 12.9690 9.2892 1.0203 22 14 11.2077 10.9242 -0.3599 23 1 10.8603 12.0187 0.5814 24 1 12.3263 11.3597 -1.2342 25 1 10.0249 10.5961 -1.1959 26 6 7.5011 7.2980 1.2846 27 7 4.5899 4.5728 -0.5913 28 7 3.8855 3.5478 -0.9247 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6887 1.8464 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 3.8575 0.6436 0.8891 35 1 3.8567 0.6439 -0.8908 36 1 5.4403 2.4771 1.7331 37 1 5.2449 6.0351 -0.9767 38 1 5.2064 7.7047 -0.3532 39 1 6.4166 7.6815 -2.4768 40 1 7.4824 6.3820 -1.8896 41 1 7.2521 9.1687 -0.6647 42 1 8.5764 8.6112 -1.7150 43 1 8.6085 9.8548 2.3326 44 1 9.7261 10.7216 1.2519 45 1 8.0990 10.2803 0.6811 46 1 13.6167 9.9837 0.8225 47 1 6.9989 8.1896 1.6600 48 1 7.9914 6.7783 2.1077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027408371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:13 Heat of formation + Delta-G solvation = 67.185734 kcal Electronic energy + Delta-G solvation = -29499.051274 eV Core-core repulsion = 25400.492205 eV Total energy + Delta-G solvation = -4098.559069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.56661 -39.72037 -38.66197 -37.46607 -35.54263 -35.02166 -32.30716 -31.51851 -31.42493 -30.54063 -29.13519 -27.07195 -26.11775 -25.52988 -24.64674 -23.79857 -22.77101 -22.18442 -21.51263 -20.00174 -18.86344 -17.88802 -17.06813 -16.96703 -16.74472 -16.37388 -16.25120 -15.77574 -15.54996 -15.26046 -14.84495 -14.76019 -14.25403 -14.04449 -13.90759 -13.71207 -13.48791 -12.97238 -12.82970 -12.70041 -12.48054 -12.40019 -12.28137 -12.16102 -12.10235 -11.95267 -11.61998 -11.01483 -10.91103 -10.77697 -10.45080 -10.40867 -10.34695 -10.15775 -10.07116 -9.89513 -9.64754 -9.55132 -9.51829 -8.61548 -8.28335 -6.73878 -5.95034 -3.42544 0.81897 1.49859 1.52493 3.06657 3.09422 3.32991 3.33907 3.48496 3.54302 3.88591 3.98103 4.15194 4.41593 4.50485 4.54968 4.64643 4.70285 4.71945 4.80442 4.94803 4.98427 5.06773 5.08853 5.19471 5.30245 5.35244 5.46811 5.57030 5.68791 5.85567 5.94748 5.99511 6.13679 6.19087 6.31023 6.34440 6.36424 6.45937 6.48641 6.58521 6.72503 6.79235 6.94454 6.98312 7.53400 7.72495 8.10264 8.27464 8.44444 9.01495 9.73091 10.14225 11.20069 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031998 B = 0.002181 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.856663 B =12833.541103 C =13196.673375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.125 3.875 5 N -0.360 5.360 6 C 0.098 3.902 7 C -0.086 4.086 8 C 0.597 3.403 9 O -0.541 6.541 10 N -0.586 5.586 11 C 0.069 3.931 12 C -0.128 4.128 13 C -0.139 4.139 14 C 0.168 3.832 15 H 0.075 0.925 16 N -0.602 5.602 17 C 0.108 3.892 18 C -0.268 4.268 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.903 5.903 22 Si 0.887 3.113 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.267 1.267 26 C 0.099 3.901 27 N -0.201 5.201 28 N -0.068 5.068 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.208 0.792 37 H 0.138 0.862 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.016 0.984 44 H 0.046 0.954 45 H 0.030 0.970 46 H 0.263 0.737 47 H 0.063 0.937 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.750 -16.479 -3.531 30.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.147 5.147 6 C -0.058 4.058 7 C -0.225 4.225 8 C 0.382 3.618 9 O -0.418 6.418 10 N -0.318 5.318 11 C -0.054 4.054 12 C -0.167 4.167 13 C -0.178 4.178 14 C 0.060 3.940 15 H 0.093 0.907 16 N -0.326 5.326 17 C -0.036 4.036 18 C -0.397 4.397 19 H 0.096 0.904 20 C -0.166 4.166 21 N -0.544 5.544 22 Si 0.718 3.282 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.192 1.192 26 C -0.024 4.024 27 N -0.073 5.073 28 N -0.047 5.047 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.225 0.775 37 H 0.154 0.846 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.979 -16.393 -4.198 31.005 hybrid contribution 0.145 0.940 0.255 0.985 sum -25.834 -15.454 -3.943 30.360 Atomic orbital electron populations 1.22811 0.79599 1.03328 1.00549 1.87783 1.20839 1.26431 1.95633 1.22626 0.91896 0.85825 1.02451 1.21704 0.93174 0.78005 1.06743 1.50233 1.30699 1.13511 1.20284 1.23404 0.91844 0.94879 0.95687 1.21595 1.06606 0.95649 0.98637 1.16785 0.80268 0.80775 0.83928 1.90815 1.53101 1.75458 1.22396 1.47954 1.41073 1.16105 1.26627 1.22740 0.95483 1.02956 0.84246 1.21796 0.97449 0.99689 0.97754 1.22157 0.98466 0.97918 0.99291 1.20751 0.89942 0.93335 0.90018 0.90710 1.44009 1.04233 1.14737 1.69572 1.21334 0.97162 0.88809 0.96304 1.18804 0.79301 0.99737 1.41855 0.90370 1.25548 0.94833 0.98557 0.97623 1.69838 1.03589 1.34974 1.46026 0.86773 0.77563 0.83112 0.80754 1.21590 1.23167 1.19166 1.22386 0.89577 0.92623 0.97818 1.74163 1.04737 1.18007 1.10440 1.82000 1.20212 0.90690 1.11798 0.93528 0.88982 0.93661 0.91219 0.92260 0.86612 0.87249 0.77540 0.84563 0.92042 0.91303 0.91874 0.92580 0.91578 0.96627 0.93566 0.95180 0.92730 0.91861 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -2.33 10.70 -35.23 -0.38 -2.71 16 3 C 0.05 0.26 6.15 37.16 0.23 0.49 16 4 C 0.13 0.60 6.91 -4.04 -0.03 0.57 16 5 N -0.36 -2.98 3.69 -61.06 -0.23 -3.20 16 6 C 0.10 0.91 11.28 -16.83 -0.19 0.72 16 7 C -0.09 -1.11 6.77 -83.55 -0.57 -1.67 16 8 C 0.60 9.59 7.69 -12.48 -0.10 9.50 16 9 O -0.54 -10.08 16.29 5.28 0.09 -10.00 16 10 N -0.59 -9.47 2.98 -174.26 -0.52 -9.99 16 11 C 0.07 0.96 6.28 -3.93 -0.02 0.94 16 12 C -0.13 -1.84 6.07 -26.83 -0.16 -2.00 16 13 C -0.14 -2.45 5.11 -26.69 -0.14 -2.59 16 14 C 0.17 3.41 2.75 -67.81 -0.19 3.22 16 15 H 0.07 1.64 7.89 -51.93 -0.41 1.23 16 16 N -0.60 -14.45 2.33 -173.35 -0.40 -14.85 16 17 C 0.11 2.38 8.33 59.85 0.50 2.88 16 18 C -0.27 -7.62 9.83 -15.06 -0.15 -7.77 16 19 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 20 C 0.03 1.02 5.33 -17.43 -0.09 0.92 16 21 N -0.90 -27.92 13.97 55.49 0.78 -27.14 16 22 Si 0.89 22.54 24.91 -169.99 -4.23 18.30 16 23 H -0.29 -7.14 6.73 56.52 0.38 -6.76 16 24 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.10 1.83 5.79 -3.71 -0.02 1.81 16 27 N -0.20 -2.54 8.63 32.85 0.28 -2.26 16 28 N -0.07 -0.75 13.65 60.35 0.82 0.07 16 29 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.12 0.30 8.08 -51.93 -0.42 -0.12 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.21 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.14 1.82 3.62 -130.49 -0.47 1.34 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.96 6.74 -51.93 -0.35 0.61 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.10 3.57 -51.93 -0.19 0.91 16 45 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.06 1.12 7.51 -51.93 -0.39 0.73 16 48 H 0.09 1.92 7.02 -51.93 -0.36 1.56 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -34.67 382.28 -5.42 -40.10 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.58 Total: -2.35 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 0.19 Total: 8.27 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.73 Total: -57.38 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.29 Total: -12.70 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.23 Total: 18.30 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.67 -5.42 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027408371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.284 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds