Wall clock time and date at job start Tue Mar 31 2020 21:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00078 * 2 1 4 4 C 1.53000 * 109.47055 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46856 * 180.02562 * 4 3 2 6 6 C 1.34817 * 126.59418 * 124.99977 * 5 4 3 7 7 C 1.36595 * 106.83595 * 179.97438 * 6 5 4 8 8 C 1.47530 * 125.76852 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99707 * 354.34284 * 8 7 6 10 10 N 1.34767 * 119.99937 * 174.33969 * 8 7 6 11 11 C 1.46924 * 120.63319 * 3.23225 * 10 8 7 12 12 C 1.52769 * 109.00967 * 233.58346 * 11 10 8 13 13 C 1.53042 * 109.38167 * 305.58545 * 12 11 10 14 14 C 1.53045 * 109.53755 * 61.23967 * 13 12 11 15 15 H 1.09003 * 109.52105 * 58.59864 * 14 13 12 16 16 N 1.46491 * 109.49654 * 178.67971 * 14 13 12 17 17 C 1.46500 * 119.99965 * 59.84212 * 16 14 13 18 18 C 1.36936 * 120.00504 * 239.83525 * 16 14 13 19 19 H 1.07997 * 119.99946 * 319.58341 * 18 16 14 20 20 C 1.38809 * 120.00191 * 139.57631 * 18 16 14 21 21 N 1.31615 * 120.00043 * 161.47345 * 20 18 16 22 22 Si 1.86803 * 119.99964 * 341.47137 * 20 18 16 23 23 H 1.48491 * 109.47349 * 95.33562 * 22 20 18 24 24 H 1.48504 * 109.47059 * 215.33448 * 22 20 18 25 25 H 1.48505 * 109.47018 * 335.33430 * 22 20 18 26 26 C 1.46926 * 120.63116 * 183.50989 * 10 8 7 27 27 N 1.34394 * 108.46043 * 0.02562 * 7 6 5 28 28 N 1.28760 * 109.52325 * 359.70765 * 27 7 6 29 29 H 1.09000 * 109.46859 * 60.00032 * 1 2 3 30 30 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47215 * 299.99969 * 1 2 3 32 32 H 1.08997 * 109.47415 * 300.00009 * 3 2 1 33 33 H 1.09000 * 109.47058 * 60.00002 * 3 2 1 34 34 H 1.09003 * 109.47263 * 299.99940 * 4 3 2 35 35 H 1.09000 * 109.47284 * 60.00020 * 4 3 2 36 36 H 1.07997 * 126.58160 * 359.97438 * 6 5 4 37 37 H 1.09003 * 109.58348 * 353.41482 * 11 10 8 38 38 H 1.09002 * 109.58886 * 113.84578 * 11 10 8 39 39 H 1.09002 * 109.56109 * 185.54977 * 12 11 10 40 40 H 1.08999 * 109.38595 * 65.51367 * 12 11 10 41 41 H 1.09000 * 109.46048 * 301.22326 * 13 12 11 42 42 H 1.08997 * 109.45526 * 181.25934 * 13 12 11 43 43 H 1.09003 * 109.47579 * 86.08527 * 17 16 14 44 44 H 1.08999 * 109.47253 * 206.08669 * 17 16 14 45 45 H 1.08999 * 109.47060 * 326.08446 * 17 16 14 46 46 H 0.97001 * 120.00069 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.58835 * 246.15857 * 26 10 8 48 48 H 1.09001 * 109.58734 * 6.58322 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0257 3.0042 0.8866 7 6 5.3069 4.2864 0.5087 8 6 6.2391 5.2023 1.1932 9 8 6.7567 4.8707 2.2423 10 7 6.5170 6.4065 0.6556 11 6 5.8462 6.8503 -0.5739 12 6 6.9037 7.2585 -1.5982 13 6 7.8350 8.3026 -0.9780 14 6 8.5441 7.6989 0.2366 15 1 9.1076 6.8181 -0.0713 16 7 9.4588 8.6887 0.8106 17 6 8.9399 9.9682 1.3004 18 6 10.7988 8.4180 0.8896 19 1 11.1346 7.4311 1.1716 20 6 11.7255 9.4121 0.6070 21 7 12.9690 9.2892 1.0203 22 14 11.2077 10.9242 -0.3599 23 1 10.8603 12.0187 0.5814 24 1 12.3263 11.3597 -1.2342 25 1 10.0249 10.5961 -1.1959 26 6 7.5011 7.2980 1.2846 27 7 4.5899 4.5728 -0.5913 28 7 3.8855 3.5478 -0.9247 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6887 1.8464 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 3.8575 0.6436 0.8891 35 1 3.8567 0.6439 -0.8908 36 1 5.4403 2.4771 1.7331 37 1 5.2449 6.0351 -0.9767 38 1 5.2064 7.7047 -0.3532 39 1 6.4166 7.6815 -2.4768 40 1 7.4824 6.3820 -1.8896 41 1 7.2521 9.1687 -0.6647 42 1 8.5764 8.6112 -1.7150 43 1 8.6085 9.8548 2.3326 44 1 9.7261 10.7216 1.2519 45 1 8.0990 10.2803 0.6811 46 1 13.6167 9.9837 0.8225 47 1 6.9989 8.1896 1.6600 48 1 7.9914 6.7783 2.1077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027408371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:12 Heat of formation + Delta-G solvation = 41.878367 kcal Electronic energy + Delta-G solvation = -29500.148684 eV Core-core repulsion = 25400.492205 eV Total energy + Delta-G solvation = -4099.656479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.40294 -41.00693 -39.08634 -38.93079 -36.91853 -35.97533 -34.08094 -33.11554 -32.31083 -31.48224 -30.39852 -28.04962 -27.45642 -26.76189 -25.59528 -25.07650 -23.89676 -23.12115 -22.72576 -21.26086 -20.21434 -18.98328 -18.64644 -17.77368 -17.61748 -17.46233 -17.18158 -16.90625 -16.51547 -16.38151 -15.85439 -15.77748 -15.43928 -15.34670 -15.16860 -15.04322 -14.60175 -14.43490 -14.17909 -13.97756 -13.94387 -13.78378 -13.47415 -13.23415 -13.02640 -12.75720 -12.57254 -12.46758 -12.27362 -12.15505 -12.05133 -11.86558 -11.67636 -11.48148 -11.39389 -11.33406 -10.88942 -10.78320 -10.63939 -10.44176 -9.70380 -8.70358 -8.19873 -5.65630 0.06073 0.52556 0.86970 1.32049 1.42308 1.55274 1.87773 2.18416 2.42230 2.66547 3.02743 3.07875 3.31836 3.41586 3.64133 3.77888 3.90020 3.96052 4.03003 4.08232 4.14243 4.19507 4.27973 4.35551 4.39382 4.44740 4.50163 4.54262 4.60834 4.65539 4.68464 4.76889 4.81723 4.85567 4.88801 5.00221 5.05398 5.13789 5.22860 5.31997 5.40923 5.46970 5.63815 5.93168 6.00150 6.16860 6.34684 6.78407 6.96427 7.07585 7.59018 8.01670 8.99261 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031998 B = 0.002181 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.856663 B =12833.541103 C =13196.673375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.120 3.880 5 N -0.346 5.346 6 C 0.120 3.880 7 C -0.114 4.114 8 C 0.595 3.405 9 O -0.576 6.576 10 N -0.591 5.591 11 C 0.071 3.929 12 C -0.120 4.120 13 C -0.130 4.130 14 C 0.167 3.833 15 H 0.044 0.956 16 N -0.614 5.614 17 C 0.106 3.894 18 C -0.263 4.263 19 H 0.032 0.968 20 C -0.022 4.022 21 N -0.952 5.952 22 Si 0.958 3.042 23 H -0.274 1.274 24 H -0.310 1.310 25 H -0.249 1.249 26 C 0.114 3.886 27 N -0.213 5.213 28 N -0.077 5.077 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.237 0.763 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.025 0.975 44 H 0.030 0.970 45 H 0.064 0.936 46 H 0.264 0.736 47 H 0.076 0.924 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.095 -16.629 -4.702 33.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.000 4.000 5 N -0.132 5.132 6 C -0.037 4.037 7 C -0.253 4.253 8 C 0.382 3.618 9 O -0.456 6.456 10 N -0.322 5.322 11 C -0.052 4.052 12 C -0.158 4.158 13 C -0.169 4.169 14 C 0.060 3.940 15 H 0.063 0.937 16 N -0.339 5.339 17 C -0.038 4.038 18 C -0.393 4.393 19 H 0.049 0.951 20 C -0.219 4.219 21 N -0.596 5.596 22 Si 0.786 3.214 23 H -0.201 1.201 24 H -0.239 1.239 25 H -0.173 1.173 26 C -0.011 4.011 27 N -0.085 5.085 28 N -0.057 5.057 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.253 0.747 37 H 0.165 0.835 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.048 0.952 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -29.409 -16.569 -5.401 34.184 hybrid contribution 1.107 0.759 0.687 1.508 sum -28.302 -15.810 -4.714 32.759 Atomic orbital electron populations 1.22976 0.78606 1.04315 1.01017 1.87756 1.21995 1.26636 1.95700 1.22562 0.92101 0.85682 1.02140 1.22066 0.92870 0.76254 1.08807 1.50402 1.29806 1.13971 1.18983 1.23793 0.90612 0.93673 0.95638 1.21244 1.07717 0.96536 0.99814 1.17184 0.80194 0.80810 0.83571 1.90788 1.54633 1.76132 1.24022 1.48016 1.40656 1.16104 1.27383 1.22921 0.95244 1.04029 0.82966 1.21761 0.96902 0.98408 0.98761 1.22021 0.98486 0.99147 0.97268 1.20779 0.89688 0.91695 0.91819 0.93716 1.44065 1.03073 1.16208 1.70528 1.21419 0.97574 0.87146 0.97642 1.18611 0.81833 0.97942 1.40922 0.95068 1.26236 0.94689 1.02324 0.98621 1.69982 1.05109 1.36656 1.47869 0.85642 0.77363 0.79248 0.79179 1.20083 1.23877 1.17258 1.21973 0.89663 0.93137 0.96308 1.74027 1.05069 1.18944 1.10494 1.81929 1.20152 0.91084 1.12532 0.93177 0.87830 0.93099 0.92008 0.92176 0.83697 0.86122 0.74652 0.83489 0.90397 0.88172 0.92837 0.91069 0.93238 0.95629 0.95166 0.91738 0.92731 0.90614 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.40 -3.97 10.70 -148.98 -1.59 -5.57 16 3 C 0.05 0.44 6.15 71.98 0.44 0.88 16 4 C 0.12 0.79 6.91 86.38 0.60 1.39 16 5 N -0.35 -4.80 3.69 -347.09 -1.28 -6.08 16 6 C 0.12 1.96 11.28 83.85 0.95 2.90 16 7 C -0.11 -2.78 6.77 40.82 0.28 -2.50 16 8 C 0.60 18.96 7.69 86.70 0.67 19.63 16 9 O -0.58 -21.83 16.29 -4.01 -0.07 -21.90 16 10 N -0.59 -18.70 2.98 -823.49 -2.45 -21.15 16 11 C 0.07 1.80 6.28 86.22 0.54 2.34 16 12 C -0.12 -3.15 6.07 30.53 0.19 -2.97 16 13 C -0.13 -4.33 5.11 30.62 0.16 -4.18 16 14 C 0.17 6.85 2.75 45.07 0.12 6.97 16 15 H 0.04 2.06 7.89 -2.39 -0.02 2.04 16 16 N -0.61 -29.68 2.33 -702.36 -1.64 -31.32 16 17 C 0.11 4.47 8.33 127.77 1.06 5.54 16 18 C -0.26 -15.55 9.83 84.03 0.83 -14.72 16 19 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 20 C -0.02 -1.34 5.33 84.86 0.45 -0.89 16 21 N -0.95 -61.02 13.97 21.65 0.30 -60.72 16 22 Si 0.96 46.78 24.91 68.60 1.71 48.49 16 23 H -0.27 -12.69 6.73 99.48 0.67 -12.02 16 24 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 25 H -0.25 -11.32 7.11 99.48 0.71 -10.61 16 26 C 0.11 4.19 5.79 86.36 0.50 4.69 16 27 N -0.21 -4.99 8.63 -49.99 -0.43 -5.43 16 28 N -0.08 -1.56 13.65 37.02 0.51 -1.05 16 29 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.15 0.18 8.08 -2.39 -0.02 0.16 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.24 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.15 3.59 3.62 -104.04 -0.38 3.22 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.17 6.74 -2.39 -0.02 2.15 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.03 1.37 3.57 -2.39 -0.01 1.36 16 45 H 0.06 2.27 6.46 -2.39 -0.02 2.25 16 46 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 47 H 0.08 2.59 7.51 -2.39 -0.02 2.57 16 48 H 0.06 2.69 7.02 -2.39 -0.02 2.67 16 Total: -1.00 -78.67 382.28 3.64 -75.03 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.56 Total: 9.20 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 8.03 Total: 20.49 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -5.00 Total: -125.74 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.66 Total: -27.47 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.71 Total: 48.49 kcal Total: -78.67 3.64 -75.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027408371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.904 kcal (2) G-P(sol) polarization free energy of solvation -78.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds