Wall clock time and date at job start Tue Mar 31 2020 21:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00323 * 2 1 4 4 H 1.07995 * 119.99783 * 201.99917 * 3 2 1 5 5 C 1.38809 * 120.00154 * 21.99568 * 3 2 1 6 6 N 1.31624 * 119.99767 * 12.68709 * 5 3 2 7 7 Si 1.86799 * 120.00208 * 192.68539 * 5 3 2 8 8 H 1.48496 * 109.46936 * 90.00321 * 7 5 3 9 9 H 1.48500 * 109.46928 * 210.00227 * 7 5 3 10 10 H 1.48498 * 109.46845 * 330.00281 * 7 5 3 11 11 C 1.46501 * 119.99633 * 179.97438 * 2 1 3 12 12 H 1.08995 * 109.52534 * 180.08314 * 11 2 1 13 13 C 1.53048 * 109.49663 * 300.16161 * 11 2 1 14 14 C 1.53046 * 109.53525 * 181.31961 * 13 11 2 15 15 C 1.53630 * 109.23844 * 298.50824 * 14 13 11 16 16 N 1.46924 * 108.54457 * 54.86126 * 15 14 13 17 17 C 1.34771 * 120.63180 * 126.36262 * 16 15 14 18 18 O 1.21284 * 119.99868 * 179.44433 * 17 16 15 19 19 C 1.50704 * 120.00012 * 359.72316 * 17 16 15 20 20 C 1.52994 * 109.46830 * 179.97438 * 19 17 16 21 21 N 1.46508 * 109.47004 * 180.02562 * 20 19 17 22 22 N 1.40171 * 126.34517 * 269.69228 * 21 20 19 23 23 C 1.29406 * 108.13388 * 179.87791 * 22 21 20 24 24 N 1.37351 * 108.83224 * 0.37880 * 23 22 21 25 25 C 1.46502 * 125.83369 * 179.77464 * 24 23 22 26 26 C 1.34816 * 108.33538 * 359.75465 * 24 23 22 27 27 O 1.21813 * 126.30438 * 180.02562 * 26 24 23 28 28 C 1.46928 * 118.73499 * 306.09000 * 16 15 14 29 29 H 1.09001 * 109.47068 * 274.33512 * 1 2 3 30 30 H 1.09005 * 109.46854 * 34.33063 * 1 2 3 31 31 H 1.09003 * 109.47390 * 154.32891 * 1 2 3 32 32 H 0.97002 * 120.00153 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.46039 * 301.33497 * 13 11 2 34 34 H 1.09001 * 109.46069 * 61.29840 * 13 11 2 35 35 H 1.08994 * 109.49825 * 58.58914 * 14 13 11 36 36 H 1.09000 * 109.49350 * 178.65176 * 14 13 11 37 37 H 1.08998 * 109.74202 * 295.11903 * 15 14 13 38 38 H 1.08999 * 109.65955 * 174.55256 * 15 14 13 39 39 H 1.08998 * 109.46962 * 299.99532 * 19 17 16 40 40 H 1.09003 * 109.46719 * 59.99874 * 19 17 16 41 41 H 1.08998 * 109.47740 * 299.99526 * 20 19 17 42 42 H 1.08994 * 109.47471 * 60.00413 * 20 19 17 43 43 H 1.08001 * 125.58142 * 180.13780 * 23 22 21 44 44 H 1.08992 * 109.47484 * 269.97725 * 25 24 23 45 45 H 1.09006 * 109.46965 * 29.97976 * 25 24 23 46 46 H 1.09000 * 109.46989 * 149.97088 * 25 24 23 47 47 H 1.09000 * 109.58501 * 173.64670 * 28 16 15 48 48 H 1.08999 * 109.58926 * 294.07110 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1707 1.2198 -0.3504 5 6 1.5316 2.3443 0.4502 6 7 0.3916 2.2704 1.1041 7 14 2.3175 4.0080 0.1282 8 1 1.8261 4.5454 -1.1659 9 1 1.9575 4.9455 1.2222 10 1 3.7936 3.8557 0.0725 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0707 0.0020 13 6 1.8250 -2.0730 1.2483 14 6 2.6144 -3.3841 1.2666 15 6 2.2448 -4.2148 0.0282 16 7 2.4680 -3.3932 -1.1692 17 6 3.2409 -3.8440 -2.1770 18 8 3.4093 -3.1605 -3.1646 19 6 3.8908 -5.2002 -2.0796 20 6 4.7062 -5.4671 -3.3463 21 7 5.3376 -6.7858 -3.2518 22 7 6.6039 -7.0643 -2.7193 23 6 6.8072 -8.3392 -2.8093 24 7 5.7114 -8.9225 -3.3971 25 6 5.5494 -10.3503 -3.6823 26 6 4.8102 -7.9566 -3.6665 27 8 3.7203 -8.1123 -4.1878 28 6 1.8277 -2.0732 -1.2496 29 1 -0.3633 0.0777 1.0247 30 1 -0.3633 0.8487 -0.5796 31 1 -0.3634 -0.9262 -0.4452 32 1 -0.0402 3.0798 1.4191 33 1 2.0645 -1.4926 2.1393 34 1 0.7573 -2.2921 1.2339 35 1 3.6822 -3.1660 1.2561 36 1 2.3665 -3.9453 2.1675 37 1 1.1960 -4.5071 0.0805 38 1 2.8724 -5.1047 -0.0171 39 1 4.5490 -5.2261 -1.2111 40 1 3.1213 -5.9652 -1.9752 41 1 4.0478 -5.4415 -4.2145 42 1 5.4757 -4.7023 -3.4510 43 1 7.6949 -8.8588 -2.4799 44 1 5.9328 -10.5676 -4.6791 45 1 6.1023 -10.9330 -2.9453 46 1 4.4925 -10.6127 -3.6342 47 1 2.1801 -1.5497 -2.1384 48 1 0.7456 -2.1944 -1.2995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027505165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:19 Heat of formation + Delta-G solvation = 42.515614 kcal Electronic energy + Delta-G solvation = -29588.748904 eV Core-core repulsion = 25489.120058 eV Total energy + Delta-G solvation = -4099.628846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.71623 -40.04517 -37.60091 -37.50054 -35.92055 -35.09091 -33.10496 -32.28728 -31.30661 -30.25359 -28.72539 -27.79738 -26.01396 -25.66863 -24.35896 -23.39706 -22.54677 -21.64525 -21.35389 -19.53806 -18.58605 -18.06243 -17.12459 -16.92801 -16.68773 -16.38412 -15.86690 -15.66586 -15.44484 -14.90231 -14.80277 -14.15720 -14.09828 -13.90542 -13.79254 -13.34755 -13.29496 -13.20107 -12.90982 -12.66657 -12.52264 -12.50572 -12.25799 -12.18824 -11.92451 -11.45499 -11.05205 -10.94601 -10.83164 -10.66337 -10.53006 -10.43841 -10.37815 -10.29563 -10.11028 -9.86415 -9.80238 -9.58968 -8.87243 -8.60023 -8.33567 -6.74905 -5.70372 -3.16197 1.43104 1.61249 2.37131 2.73975 2.74895 3.20842 3.41418 3.47680 3.49058 4.07694 4.33760 4.51295 4.56132 4.60444 4.65019 4.74410 4.91968 4.94848 5.03066 5.15199 5.23165 5.31626 5.38319 5.46046 5.53247 5.55587 5.61203 5.65680 5.77821 5.86630 5.90490 6.00513 6.16638 6.19899 6.23910 6.39008 6.52001 6.65695 6.79896 6.94833 7.01111 7.29675 7.40829 7.59984 7.74187 7.74474 7.83931 8.29598 8.42044 9.25453 9.88078 10.36137 11.34438 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002194 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.209344 B =12760.272448 C =13099.026812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.107 3.893 16 N -0.603 5.603 17 C 0.519 3.481 18 O -0.544 6.544 19 C -0.157 4.157 20 C 0.176 3.824 21 N -0.450 5.450 22 N -0.278 5.278 23 C 0.250 3.750 24 N -0.564 5.564 25 C 0.099 3.901 26 C 0.641 3.359 27 O -0.552 6.552 28 C 0.096 3.904 29 H 0.029 0.971 30 H 0.044 0.956 31 H -0.002 1.002 32 H 0.252 0.748 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.231 0.769 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.399 -27.309 -3.706 29.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.382 4.382 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.336 5.336 17 C 0.306 3.694 18 O -0.421 6.421 19 C -0.199 4.199 20 C 0.055 3.945 21 N -0.271 5.271 22 N -0.098 5.098 23 C -0.049 4.049 24 N -0.293 5.293 25 C -0.043 4.043 26 C 0.341 3.659 27 O -0.425 6.425 28 C -0.027 4.027 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.247 0.753 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.912 -25.906 -4.252 28.431 hybrid contribution 0.046 0.124 -0.049 0.141 sum 10.959 -25.783 -4.301 28.343 Atomic orbital electron populations 1.20792 0.82571 0.95523 0.99330 1.43899 1.01852 1.00034 1.85682 1.19243 0.97759 0.85196 1.36050 0.91348 1.24997 0.97823 0.98466 0.98407 1.70077 1.18527 1.26979 1.39764 0.86228 0.78780 0.84006 0.77381 1.21474 1.21807 1.20497 1.20578 0.96447 0.86245 0.90715 0.91694 1.22129 0.99429 0.94654 1.01003 1.22007 1.01096 0.97437 0.96515 1.21863 1.01365 0.93430 0.84963 1.48177 1.48646 1.18980 1.17833 1.20178 0.78894 0.87459 0.82875 1.90720 1.61882 1.58722 1.30823 1.22047 1.00984 0.96355 1.00463 1.21235 0.96718 0.78336 0.98169 1.49083 1.13673 1.07897 1.56414 1.77047 0.99731 1.13502 1.19552 1.25951 0.93322 0.89647 0.96006 1.45965 1.17171 1.09892 1.56309 1.21819 1.04702 0.75495 1.02317 1.16823 0.84851 0.81654 0.82593 1.91108 1.18943 1.82998 1.49461 1.22447 0.96896 0.81261 1.02110 0.95223 0.93760 0.98376 0.93795 0.91439 0.92452 0.91709 0.91325 0.91322 0.90460 0.88131 0.88601 0.87751 0.87636 0.75331 0.90888 0.89302 0.89392 0.89099 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.03 59.85 0.48 4.46 16 2 N -0.59 -14.83 2.82 -173.34 -0.49 -15.32 16 3 C -0.25 -7.02 9.60 -15.06 -0.14 -7.17 16 4 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.54 10.64 55.49 0.59 -25.95 16 7 Si 0.91 22.25 29.57 -169.99 -5.03 17.22 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.17 3.47 2.74 -67.80 -0.19 3.28 16 12 H 0.06 1.41 7.86 -51.93 -0.41 1.00 16 13 C -0.13 -2.30 5.14 -26.68 -0.14 -2.44 16 14 C -0.13 -1.70 6.10 -26.38 -0.16 -1.86 16 15 C 0.11 1.27 6.37 -3.48 -0.02 1.25 16 16 N -0.60 -9.22 2.97 -172.50 -0.51 -9.73 16 17 C 0.52 7.95 7.70 -10.99 -0.08 7.87 16 18 O -0.54 -10.29 15.40 5.55 0.09 -10.20 16 19 C -0.16 -1.81 4.37 -27.88 -0.12 -1.93 16 20 C 0.18 2.10 5.68 -4.04 -0.02 2.08 16 21 N -0.45 -5.12 3.63 -65.12 -0.24 -5.36 16 22 N -0.28 -2.58 12.53 29.87 0.37 -2.21 16 23 C 0.25 1.36 12.66 -89.12 -1.13 0.23 16 24 N -0.56 -4.11 3.14 -130.11 -0.41 -4.52 16 25 C 0.10 0.33 11.05 59.85 0.66 0.99 16 26 C 0.64 7.65 8.60 -86.74 -0.75 6.91 16 27 O -0.55 -8.53 17.71 5.09 0.09 -8.44 16 28 C 0.10 1.79 5.78 -3.71 -0.02 1.77 16 29 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 30 H 0.04 1.18 7.21 -51.93 -0.37 0.81 16 31 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.72 5.93 -51.93 -0.31 0.42 16 39 H 0.10 1.02 7.70 -51.93 -0.40 0.62 16 40 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.10 1.36 8.06 -51.93 -0.42 0.94 16 42 H 0.11 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.23 -0.04 8.06 -52.49 -0.42 -0.46 16 44 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 46 H 0.09 0.40 8.08 -51.93 -0.42 -0.02 16 47 H 0.09 1.92 7.01 -51.93 -0.36 1.56 16 48 H 0.06 1.19 6.50 -51.93 -0.34 0.85 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -36.79 387.53 -8.90 -45.68 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.48 Total: -2.41 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: -1.72 Total: 15.39 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.68 Total: -63.08 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.18 Total: -18.64 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.79 -8.90 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.199 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds