Wall clock time and date at job start Tue Mar 31 2020 21:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00323 * 2 1 4 4 H 1.07995 * 119.99783 * 201.99917 * 3 2 1 5 5 C 1.38809 * 120.00154 * 21.99568 * 3 2 1 6 6 N 1.31624 * 119.99767 * 12.68709 * 5 3 2 7 7 Si 1.86799 * 120.00208 * 192.68539 * 5 3 2 8 8 H 1.48496 * 109.46936 * 90.00321 * 7 5 3 9 9 H 1.48500 * 109.46928 * 210.00227 * 7 5 3 10 10 H 1.48498 * 109.46845 * 330.00281 * 7 5 3 11 11 C 1.46501 * 119.99633 * 179.97438 * 2 1 3 12 12 H 1.08995 * 109.52534 * 180.08314 * 11 2 1 13 13 C 1.53048 * 109.49663 * 300.16161 * 11 2 1 14 14 C 1.53046 * 109.53525 * 181.31961 * 13 11 2 15 15 C 1.53630 * 109.23844 * 298.50824 * 14 13 11 16 16 N 1.46924 * 108.54457 * 54.86126 * 15 14 13 17 17 C 1.34771 * 120.63180 * 126.36262 * 16 15 14 18 18 O 1.21284 * 119.99868 * 179.44433 * 17 16 15 19 19 C 1.50704 * 120.00012 * 359.72316 * 17 16 15 20 20 C 1.52994 * 109.46830 * 179.97438 * 19 17 16 21 21 N 1.46508 * 109.47004 * 180.02562 * 20 19 17 22 22 N 1.40171 * 126.34517 * 269.69228 * 21 20 19 23 23 C 1.29406 * 108.13388 * 179.87791 * 22 21 20 24 24 N 1.37351 * 108.83224 * 0.37880 * 23 22 21 25 25 C 1.46502 * 125.83369 * 179.77464 * 24 23 22 26 26 C 1.34816 * 108.33538 * 359.75465 * 24 23 22 27 27 O 1.21813 * 126.30438 * 180.02562 * 26 24 23 28 28 C 1.46928 * 118.73499 * 306.09000 * 16 15 14 29 29 H 1.09001 * 109.47068 * 274.33512 * 1 2 3 30 30 H 1.09005 * 109.46854 * 34.33063 * 1 2 3 31 31 H 1.09003 * 109.47390 * 154.32891 * 1 2 3 32 32 H 0.97002 * 120.00153 * 179.97438 * 6 5 3 33 33 H 1.09002 * 109.46039 * 301.33497 * 13 11 2 34 34 H 1.09001 * 109.46069 * 61.29840 * 13 11 2 35 35 H 1.08994 * 109.49825 * 58.58914 * 14 13 11 36 36 H 1.09000 * 109.49350 * 178.65176 * 14 13 11 37 37 H 1.08998 * 109.74202 * 295.11903 * 15 14 13 38 38 H 1.08999 * 109.65955 * 174.55256 * 15 14 13 39 39 H 1.08998 * 109.46962 * 299.99532 * 19 17 16 40 40 H 1.09003 * 109.46719 * 59.99874 * 19 17 16 41 41 H 1.08998 * 109.47740 * 299.99526 * 20 19 17 42 42 H 1.08994 * 109.47471 * 60.00413 * 20 19 17 43 43 H 1.08001 * 125.58142 * 180.13780 * 23 22 21 44 44 H 1.08992 * 109.47484 * 269.97725 * 25 24 23 45 45 H 1.09006 * 109.46965 * 29.97976 * 25 24 23 46 46 H 1.09000 * 109.46989 * 149.97088 * 25 24 23 47 47 H 1.09000 * 109.58501 * 173.64670 * 28 16 15 48 48 H 1.08999 * 109.58926 * 294.07110 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1707 1.2198 -0.3504 5 6 1.5316 2.3443 0.4502 6 7 0.3916 2.2704 1.1041 7 14 2.3175 4.0080 0.1282 8 1 1.8261 4.5454 -1.1659 9 1 1.9575 4.9455 1.2222 10 1 3.7936 3.8557 0.0725 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0707 0.0020 13 6 1.8250 -2.0730 1.2483 14 6 2.6144 -3.3841 1.2666 15 6 2.2448 -4.2148 0.0282 16 7 2.4680 -3.3932 -1.1692 17 6 3.2409 -3.8440 -2.1770 18 8 3.4093 -3.1605 -3.1646 19 6 3.8908 -5.2002 -2.0796 20 6 4.7062 -5.4671 -3.3463 21 7 5.3376 -6.7858 -3.2518 22 7 6.6039 -7.0643 -2.7193 23 6 6.8072 -8.3392 -2.8093 24 7 5.7114 -8.9225 -3.3971 25 6 5.5494 -10.3503 -3.6823 26 6 4.8102 -7.9566 -3.6665 27 8 3.7203 -8.1123 -4.1878 28 6 1.8277 -2.0732 -1.2496 29 1 -0.3633 0.0777 1.0247 30 1 -0.3633 0.8487 -0.5796 31 1 -0.3634 -0.9262 -0.4452 32 1 -0.0402 3.0798 1.4191 33 1 2.0645 -1.4926 2.1393 34 1 0.7573 -2.2921 1.2339 35 1 3.6822 -3.1660 1.2561 36 1 2.3665 -3.9453 2.1675 37 1 1.1960 -4.5071 0.0805 38 1 2.8724 -5.1047 -0.0171 39 1 4.5490 -5.2261 -1.2111 40 1 3.1213 -5.9652 -1.9752 41 1 4.0478 -5.4415 -4.2145 42 1 5.4757 -4.7023 -3.4510 43 1 7.6949 -8.8588 -2.4799 44 1 5.9328 -10.5676 -4.6791 45 1 6.1023 -10.9330 -2.9453 46 1 4.4925 -10.6127 -3.6342 47 1 2.1801 -1.5497 -2.1384 48 1 0.7456 -2.1944 -1.2995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027505165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:18 Heat of formation + Delta-G solvation = 18.575554 kcal Electronic energy + Delta-G solvation = -29589.787023 eV Core-core repulsion = 25489.120058 eV Total energy + Delta-G solvation = -4100.666965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.38936 -41.32467 -39.04070 -38.40342 -36.81891 -36.64601 -34.16100 -33.64265 -32.86984 -31.27871 -30.19087 -28.34070 -28.07140 -26.75157 -25.60275 -24.85636 -23.25152 -23.06256 -22.14263 -21.02801 -19.89329 -18.94962 -18.72007 -17.90604 -17.81304 -17.22383 -17.04296 -16.73904 -16.64258 -16.40662 -15.74594 -15.61461 -15.34870 -15.13600 -14.79864 -14.62368 -14.47222 -14.40573 -13.96085 -13.76816 -13.70644 -13.61848 -13.47017 -13.20827 -12.88969 -12.84978 -12.81699 -12.51601 -12.40751 -12.31003 -12.11601 -11.95409 -11.80404 -11.72592 -11.40688 -11.36751 -11.08174 -10.87769 -10.67095 -9.74515 -9.65119 -8.78396 -7.85015 -5.32917 0.72899 1.11523 1.43326 1.45667 1.52336 1.54020 1.56536 1.93018 2.29951 2.49536 3.27661 3.42366 3.50670 3.58580 3.71705 3.95926 3.99384 4.05220 4.09435 4.14119 4.22270 4.30211 4.31645 4.36078 4.55767 4.58754 4.64521 4.67979 4.72347 4.76994 4.84544 4.85665 4.90068 4.96890 5.01640 5.10544 5.13859 5.26915 5.41894 5.47448 5.49148 5.62550 5.70643 5.71659 6.30298 6.38902 6.65497 6.95165 7.07433 7.13125 7.84245 8.26688 9.17618 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002194 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.209344 B =12760.272448 C =13099.026812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.063 0.937 5 C -0.051 4.051 6 N -0.935 5.935 7 Si 0.968 3.032 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.271 1.271 11 C 0.168 3.832 12 H 0.047 0.953 13 C -0.123 4.123 14 C -0.121 4.121 15 C 0.104 3.896 16 N -0.604 5.604 17 C 0.516 3.484 18 O -0.587 6.587 19 C -0.137 4.137 20 C 0.180 3.820 21 N -0.457 5.457 22 N -0.316 5.316 23 C 0.281 3.719 24 N -0.558 5.558 25 C 0.091 3.909 26 C 0.625 3.375 27 O -0.600 6.600 28 C 0.112 3.888 29 H 0.008 0.992 30 H 0.013 0.987 31 H 0.029 0.971 32 H 0.249 0.751 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.290 0.710 44 H 0.083 0.917 45 H 0.133 0.867 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.574 -30.762 -2.617 33.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.081 0.919 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.196 1.196 11 C 0.060 3.940 12 H 0.065 0.935 13 C -0.163 4.163 14 C -0.160 4.160 15 C -0.017 4.017 16 N -0.336 5.336 17 C 0.305 3.695 18 O -0.468 6.468 19 C -0.178 4.178 20 C 0.058 3.942 21 N -0.277 5.277 22 N -0.137 5.137 23 C -0.017 4.017 24 N -0.286 5.286 25 C -0.049 4.049 26 C 0.324 3.676 27 O -0.478 6.478 28 C -0.013 4.013 29 H 0.026 0.974 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.305 0.695 44 H 0.101 0.899 45 H 0.152 0.848 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.143 -29.444 -3.137 32.397 hybrid contribution -0.531 1.060 -0.424 1.259 sum 12.612 -28.385 -3.561 31.264 Atomic orbital electron populations 1.20494 0.82582 0.95699 0.97657 1.44104 1.02146 1.01053 1.86009 1.19484 0.97738 0.86720 1.35449 0.91913 1.25723 0.98583 1.01601 0.98702 1.70223 1.19700 1.27416 1.40824 0.85259 0.78313 0.79935 0.76902 1.21489 1.21695 1.19594 1.20710 0.94924 0.85251 0.93111 0.93496 1.21944 1.00194 0.96356 0.97778 1.21956 1.00234 0.95165 0.98626 1.22168 1.03244 0.93694 0.82589 1.48240 1.48243 1.17901 1.19246 1.20866 0.78216 0.88474 0.81993 1.90703 1.63242 1.60240 1.32596 1.21916 1.01172 0.93638 1.01039 1.20992 0.96424 0.79083 0.97716 1.48991 1.14657 1.07334 1.56695 1.77088 0.98789 1.15796 1.22040 1.27165 0.93477 0.88551 0.92489 1.46181 1.16558 1.10571 1.55244 1.22175 1.04654 0.73553 1.04508 1.17137 0.85060 0.82674 0.82721 1.91056 1.21196 1.83869 1.51632 1.21934 0.96910 0.82875 0.99538 0.97363 0.96795 0.95262 0.94194 0.93837 0.92437 0.91644 0.87902 0.89850 0.86758 0.85787 0.87331 0.89894 0.88176 0.69520 0.89884 0.84827 0.90986 0.92326 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.11 8.03 127.77 1.03 10.13 16 2 N -0.61 -31.47 2.82 -702.33 -1.98 -33.45 16 3 C -0.26 -15.09 9.60 84.03 0.81 -14.28 16 4 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 5 C -0.05 -2.94 5.10 84.86 0.43 -2.50 16 6 N -0.94 -56.19 10.64 21.65 0.23 -55.96 16 7 Si 0.97 46.71 29.57 68.60 2.03 48.74 16 8 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 9 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 C 0.17 6.98 2.74 45.07 0.12 7.10 16 12 H 0.05 2.09 7.86 -2.39 -0.02 2.07 16 13 C -0.12 -4.19 5.14 30.63 0.16 -4.04 16 14 C -0.12 -2.76 6.10 30.82 0.19 -2.57 16 15 C 0.10 2.13 6.37 86.51 0.55 2.68 16 16 N -0.60 -17.77 2.97 -818.05 -2.43 -20.20 16 17 C 0.52 15.57 7.70 87.66 0.67 16.25 16 18 O -0.59 -22.99 15.40 -3.04 -0.05 -23.03 16 19 C -0.14 -2.92 4.37 29.85 0.13 -2.79 16 20 C 0.18 4.30 5.68 86.38 0.49 4.79 16 21 N -0.46 -9.92 3.63 -478.02 -1.73 -11.66 16 22 N -0.32 -5.06 12.53 -59.42 -0.74 -5.81 16 23 C 0.28 1.89 12.66 179.82 2.28 4.16 16 24 N -0.56 -6.54 3.14 -683.69 -2.15 -8.68 16 25 C 0.09 0.31 11.05 127.77 1.41 1.73 16 26 C 0.63 14.34 8.60 178.99 1.54 15.88 16 27 O -0.60 -18.83 17.71 -4.71 -0.08 -18.91 16 28 C 0.11 4.23 5.78 86.36 0.50 4.73 16 29 H 0.01 0.44 7.41 -2.39 -0.02 0.42 16 30 H 0.01 0.75 7.21 -2.38 -0.02 0.73 16 31 H 0.03 1.26 6.36 -2.39 -0.02 1.24 16 32 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.95 7.71 -2.39 -0.02 1.93 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 1.57 5.93 -2.39 -0.01 1.56 16 39 H 0.12 2.10 7.70 -2.39 -0.02 2.08 16 40 H 0.11 2.10 7.93 -2.39 -0.02 2.08 16 41 H 0.08 2.30 8.06 -2.39 -0.02 2.28 16 42 H 0.10 2.44 8.10 -2.39 -0.02 2.42 16 43 H 0.29 -1.98 8.06 -2.91 -0.02 -2.01 16 44 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.13 -0.72 8.14 -2.38 -0.02 -0.74 16 46 H 0.07 0.53 8.08 -2.39 -0.02 0.51 16 47 H 0.06 2.59 7.01 -2.39 -0.02 2.57 16 48 H 0.06 2.41 6.50 -2.39 -0.02 2.39 16 Total: -1.00 -86.82 387.53 4.37 -82.46 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 0.96 Total: 5.23 kcal Atomic # 6 Polarization: 30.96 SS G_CDS: 10.31 Total: 41.26 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -8.80 Total: -135.75 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.13 Total: -41.94 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -86.82 4.37 -82.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027505165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.034 kcal (2) G-P(sol) polarization free energy of solvation -86.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds