Wall clock time and date at job start Tue Mar 31 2020 21:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00380 * 2 1 4 4 C 1.52995 * 109.47203 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47065 * 179.97438 * 4 3 2 6 6 C 1.34813 * 126.59361 * 125.00244 * 5 4 3 7 7 C 1.36597 * 106.84294 * 180.02562 * 6 5 4 8 8 C 1.47520 * 125.77212 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00351 * 359.97438 * 8 7 6 10 10 N 1.34785 * 119.99841 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99714 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.49035 * 325.04923 * 11 10 8 13 13 C 1.52568 * 109.48753 * 204.99787 * 11 10 8 14 14 C 1.47093 * 114.32330 * 155.02880 * 13 11 10 15 15 C 1.54863 * 110.32676 * 62.79899 * 14 13 11 16 16 N 1.44580 * 109.57847 * 288.74806 * 15 14 13 17 17 C 1.36936 * 118.64184 * 270.71385 * 16 15 14 18 18 H 1.07998 * 120.00338 * 26.53481 * 17 16 15 19 19 C 1.38816 * 119.99915 * 206.54048 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.72318 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.71616 * 19 17 16 22 22 H 1.48497 * 109.46938 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46817 * 120.00238 * 21 19 17 24 24 H 1.48492 * 109.47445 * 240.00341 * 21 19 17 25 25 C 1.47575 * 122.73435 * 90.75972 * 16 15 14 26 26 C 1.50887 * 109.48786 * 85.11301 * 11 10 8 27 27 N 1.34398 * 108.45544 * 0.24395 * 7 6 5 28 28 N 1.28762 * 109.52381 * 359.58498 * 27 7 6 29 29 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47350 * 300.00874 * 1 2 3 31 31 H 1.09003 * 109.46453 * 60.00211 * 1 2 3 32 32 H 1.08998 * 109.46856 * 59.99593 * 3 2 1 33 33 H 1.08995 * 109.46360 * 299.99843 * 3 2 1 34 34 H 1.09005 * 109.46773 * 60.00018 * 4 3 2 35 35 H 1.08995 * 109.47705 * 300.00096 * 4 3 2 36 36 H 1.08007 * 126.57962 * 0.02562 * 6 5 4 37 37 H 0.96991 * 119.99955 * 359.97438 * 10 8 7 38 38 H 1.08991 * 108.51324 * 33.77107 * 13 11 10 39 39 H 1.09000 * 108.51233 * 276.27744 * 13 11 10 40 40 H 1.09003 * 109.32680 * 302.53667 * 14 13 11 41 41 H 1.09002 * 109.18784 * 182.97584 * 14 13 11 42 42 H 1.09001 * 109.44815 * 48.77106 * 15 14 13 43 43 H 1.08998 * 109.45162 * 168.72168 * 15 14 13 44 44 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 45 45 H 1.08999 * 108.95234 * 197.15037 * 25 16 15 46 46 H 1.08999 * 108.89335 * 78.46045 * 25 16 15 47 47 H 1.08999 * 109.36765 * 332.03994 * 26 11 10 48 48 H 1.09004 * 109.36623 * 91.78170 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0252 3.0050 0.8867 7 6 5.3059 4.2871 0.5082 8 6 6.2374 5.2039 1.1924 9 8 6.8332 4.8352 2.1862 10 7 6.4272 6.4506 0.7166 11 6 7.3518 7.3612 1.3965 12 1 7.3103 7.1858 2.4715 13 6 6.9548 8.8042 1.1003 14 6 7.3866 9.7728 2.1197 15 6 8.9324 9.8103 2.2054 16 7 9.4138 8.5894 2.8120 17 6 9.5457 8.5408 4.1741 18 1 8.9314 9.1721 4.7990 19 6 10.4690 7.6802 4.7518 20 7 11.4208 7.1461 4.0161 21 14 10.3608 7.2801 6.5733 22 1 9.2096 8.0029 7.1712 23 1 10.1716 5.8177 6.7484 24 1 11.6148 7.7014 7.2479 25 6 9.7700 7.3935 2.0241 26 6 8.7555 7.1166 0.8999 27 7 4.5856 4.5741 -0.5895 28 7 3.8815 3.5488 -0.9224 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8462 -0.8900 34 1 3.8574 0.6435 -0.8892 35 1 3.8568 0.6438 0.8908 36 1 5.4397 2.4786 1.7338 37 1 5.9517 6.7448 -0.0759 38 1 5.8695 8.8538 1.0135 39 1 7.3886 9.0930 0.1429 40 1 6.9785 9.4834 3.0881 41 1 7.0159 10.7626 1.8532 42 1 9.3493 9.9064 1.2029 43 1 9.2418 10.6626 2.8104 44 1 12.0662 6.5450 4.4199 45 1 9.8068 6.5300 2.6883 46 1 10.7555 7.5422 1.5827 47 1 8.8488 6.0800 0.5761 48 1 8.9616 7.7780 0.0584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052369557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:15 Heat of formation + Delta-G solvation = 42.628250 kcal Electronic energy + Delta-G solvation = -29328.405080 eV Core-core repulsion = 25228.781118 eV Total energy + Delta-G solvation = -4099.623962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.40554 -39.46748 -38.61779 -37.50062 -35.26516 -34.59340 -32.79146 -31.43446 -30.97078 -30.55051 -29.75710 -27.02624 -25.99385 -24.50893 -24.40957 -23.31202 -22.80182 -22.05206 -20.25678 -20.03749 -19.13869 -18.19584 -17.11261 -16.93334 -16.54154 -16.24819 -15.92497 -15.82995 -15.41828 -15.02390 -14.69016 -14.47154 -14.34808 -13.94989 -13.89690 -13.46420 -13.09560 -12.90330 -12.75110 -12.58686 -12.34746 -12.18463 -11.97620 -11.84532 -11.55354 -11.42900 -11.02201 -10.81795 -10.72613 -10.67404 -10.36456 -10.33698 -10.12815 -9.99481 -9.89259 -9.69663 -9.62235 -9.49533 -9.45601 -8.63594 -8.26410 -6.55612 -5.66782 -3.10258 0.90599 1.58471 1.66337 3.12600 3.37010 3.46333 3.47748 3.54086 3.55657 3.98145 4.10849 4.20757 4.54197 4.60917 4.63283 4.70864 4.76250 4.81688 4.88288 4.99816 5.11599 5.20482 5.25103 5.37665 5.56642 5.60314 5.67911 5.85026 6.03485 6.08451 6.19341 6.30040 6.39348 6.39844 6.51867 6.58063 6.68014 6.76074 6.85381 6.93057 7.07899 7.14439 7.54892 7.64454 7.83230 7.91520 7.95141 8.49191 8.59196 9.35516 10.02867 10.47217 11.40751 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015840 B = 0.002397 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.205578 B =11680.377905 C =12710.517408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.364 5.364 6 C 0.097 3.903 7 C -0.092 4.092 8 C 0.596 3.404 9 O -0.524 6.524 10 N -0.711 5.711 11 C 0.155 3.845 12 H 0.104 0.896 13 C -0.107 4.107 14 C -0.145 4.145 15 C 0.156 3.844 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.292 1.292 25 C 0.183 3.817 26 C -0.147 4.147 27 N -0.202 5.202 28 N -0.069 5.069 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.208 0.792 37 H 0.399 0.601 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.252 0.748 45 H 0.078 0.922 46 H 0.025 0.975 47 H 0.056 0.944 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.660 -11.270 -10.714 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.151 5.151 6 C -0.059 4.059 7 C -0.232 4.232 8 C 0.378 3.622 9 O -0.399 6.399 10 N -0.360 5.360 11 C 0.052 3.948 12 H 0.122 0.878 13 C -0.145 4.145 14 C -0.185 4.185 15 C 0.028 3.972 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.729 3.271 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.219 1.219 25 C 0.057 3.943 26 C -0.187 4.187 27 N -0.077 5.077 28 N -0.049 5.049 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.224 0.776 37 H 0.233 0.767 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.760 -11.442 -11.201 25.433 hybrid contribution -0.047 -0.452 1.335 1.410 sum -19.806 -11.894 -9.866 25.121 Atomic orbital electron populations 1.22811 0.79637 1.03298 1.00539 1.87782 1.20811 1.26472 1.95632 1.22626 0.91944 0.85779 1.02430 1.21675 0.93127 0.78099 1.06662 1.50246 1.30841 1.13512 1.20469 1.23457 0.91837 0.95010 0.95624 1.21715 1.06834 0.95692 0.98931 1.16738 0.80498 0.81532 0.83395 1.90900 1.48311 1.75673 1.25010 1.46120 1.45722 1.12873 1.31331 1.20591 0.87787 0.87374 0.99079 0.87756 1.20568 0.99761 0.94217 0.99977 1.21447 1.01448 0.96775 0.98880 1.20702 0.90445 0.89932 0.96136 1.43680 1.76229 1.07802 1.03560 1.19213 1.14894 1.22275 0.82230 0.91735 1.25011 0.95427 1.01292 0.97568 1.70067 1.15489 1.34351 1.34860 0.86279 0.77192 0.78076 0.85559 1.20342 1.21560 1.21921 1.20945 0.91956 0.90669 0.90700 1.22458 0.95691 1.00275 1.00293 1.74626 1.03878 1.18859 1.10288 1.81951 1.20628 0.90504 1.11863 0.88998 0.93652 0.93563 0.92263 0.91253 0.87363 0.86640 0.77578 0.76664 0.93286 0.92710 0.91914 0.93026 0.94956 0.93603 0.93826 0.90332 0.95665 0.92555 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.63 10.70 -35.23 -0.38 -3.01 16 3 C 0.05 0.31 6.14 37.15 0.23 0.54 16 4 C 0.13 0.74 6.91 -4.05 -0.03 0.71 16 5 N -0.36 -3.42 3.69 -61.06 -0.23 -3.65 16 6 C 0.10 1.03 11.27 -16.84 -0.19 0.84 16 7 C -0.09 -1.28 6.99 -83.55 -0.58 -1.86 16 8 C 0.60 10.05 7.64 -12.47 -0.10 9.96 16 9 O -0.52 -10.81 16.52 5.28 0.09 -10.72 16 10 N -0.71 -11.31 4.93 -56.11 -0.28 -11.59 16 11 C 0.15 2.84 2.06 -69.21 -0.14 2.70 16 12 H 0.10 2.36 6.92 -51.93 -0.36 2.00 16 13 C -0.11 -1.72 4.69 -29.79 -0.14 -1.86 16 14 C -0.14 -2.52 5.74 -28.58 -0.16 -2.69 16 15 C 0.16 3.23 5.66 -4.08 -0.02 3.21 16 16 N -0.59 -14.73 2.27 -172.11 -0.39 -15.12 16 17 C -0.26 -7.09 9.44 -15.06 -0.14 -7.23 16 18 H 0.06 1.76 7.88 -52.49 -0.41 1.35 16 19 C 0.01 0.16 4.87 -17.43 -0.08 0.07 16 20 N -0.90 -26.80 11.01 55.49 0.61 -26.19 16 21 Si 0.90 22.47 29.58 -169.99 -5.03 17.44 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 C 0.18 4.50 4.67 -2.96 -0.01 4.49 16 26 C -0.15 -2.92 5.39 -27.30 -0.15 -3.07 16 27 N -0.20 -2.77 12.04 32.84 0.40 -2.37 16 28 N -0.07 -0.84 13.65 60.35 0.82 -0.02 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.12 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.21 1.65 8.06 -52.48 -0.42 1.23 16 37 H 0.40 5.44 8.29 -40.82 -0.34 5.11 16 38 H 0.05 0.70 8.04 -51.93 -0.42 0.28 16 39 H 0.05 0.82 7.36 -51.93 -0.38 0.43 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 43 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 44 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.08 2.22 6.33 -51.93 -0.33 1.90 16 46 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 47 H 0.06 1.13 7.85 -51.93 -0.41 0.72 16 48 H 0.05 0.86 7.32 -51.93 -0.38 0.48 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -33.90 391.83 -6.53 -40.43 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.64 Total: 1.82 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -0.41 Total: 7.06 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.94 Total: -58.93 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.29 Total: -13.73 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.03 Total: 17.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.90 -6.53 -40.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052369557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.058 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds