Wall clock time and date at job start Tue Mar 31 2020 21:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00380 * 2 1 4 4 C 1.52995 * 109.47203 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47065 * 179.97438 * 4 3 2 6 6 C 1.34813 * 126.59361 * 125.00244 * 5 4 3 7 7 C 1.36597 * 106.84294 * 180.02562 * 6 5 4 8 8 C 1.47520 * 125.77212 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00351 * 359.97438 * 8 7 6 10 10 N 1.34785 * 119.99841 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99714 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.49035 * 325.04923 * 11 10 8 13 13 C 1.52568 * 109.48753 * 204.99787 * 11 10 8 14 14 C 1.47093 * 114.32330 * 155.02880 * 13 11 10 15 15 C 1.54863 * 110.32676 * 62.79899 * 14 13 11 16 16 N 1.44580 * 109.57847 * 288.74806 * 15 14 13 17 17 C 1.36936 * 118.64184 * 270.71385 * 16 15 14 18 18 H 1.07998 * 120.00338 * 26.53481 * 17 16 15 19 19 C 1.38816 * 119.99915 * 206.54048 * 17 16 15 20 20 N 1.31620 * 120.00010 * 15.72318 * 19 17 16 21 21 Si 1.86801 * 120.00173 * 195.71616 * 19 17 16 22 22 H 1.48497 * 109.46938 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46817 * 120.00238 * 21 19 17 24 24 H 1.48492 * 109.47445 * 240.00341 * 21 19 17 25 25 C 1.47575 * 122.73435 * 90.75972 * 16 15 14 26 26 C 1.50887 * 109.48786 * 85.11301 * 11 10 8 27 27 N 1.34398 * 108.45544 * 0.24395 * 7 6 5 28 28 N 1.28762 * 109.52381 * 359.58498 * 27 7 6 29 29 H 1.08999 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47350 * 300.00874 * 1 2 3 31 31 H 1.09003 * 109.46453 * 60.00211 * 1 2 3 32 32 H 1.08998 * 109.46856 * 59.99593 * 3 2 1 33 33 H 1.08995 * 109.46360 * 299.99843 * 3 2 1 34 34 H 1.09005 * 109.46773 * 60.00018 * 4 3 2 35 35 H 1.08995 * 109.47705 * 300.00096 * 4 3 2 36 36 H 1.08007 * 126.57962 * 0.02562 * 6 5 4 37 37 H 0.96991 * 119.99955 * 359.97438 * 10 8 7 38 38 H 1.08991 * 108.51324 * 33.77107 * 13 11 10 39 39 H 1.09000 * 108.51233 * 276.27744 * 13 11 10 40 40 H 1.09003 * 109.32680 * 302.53667 * 14 13 11 41 41 H 1.09002 * 109.18784 * 182.97584 * 14 13 11 42 42 H 1.09001 * 109.44815 * 48.77106 * 15 14 13 43 43 H 1.08998 * 109.45162 * 168.72168 * 15 14 13 44 44 H 0.97000 * 120.00099 * 179.97438 * 20 19 17 45 45 H 1.08999 * 108.95234 * 197.15037 * 25 16 15 46 46 H 1.08999 * 108.89335 * 78.46045 * 25 16 15 47 47 H 1.08999 * 109.36765 * 332.03994 * 26 11 10 48 48 H 1.09004 * 109.36623 * 91.78170 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0252 3.0050 0.8867 7 6 5.3059 4.2871 0.5082 8 6 6.2374 5.2039 1.1924 9 8 6.8332 4.8352 2.1862 10 7 6.4272 6.4506 0.7166 11 6 7.3518 7.3612 1.3965 12 1 7.3103 7.1858 2.4715 13 6 6.9548 8.8042 1.1003 14 6 7.3866 9.7728 2.1197 15 6 8.9324 9.8103 2.2054 16 7 9.4138 8.5894 2.8120 17 6 9.5457 8.5408 4.1741 18 1 8.9314 9.1721 4.7990 19 6 10.4690 7.6802 4.7518 20 7 11.4208 7.1461 4.0161 21 14 10.3608 7.2801 6.5733 22 1 9.2096 8.0029 7.1712 23 1 10.1716 5.8177 6.7484 24 1 11.6148 7.7014 7.2479 25 6 9.7700 7.3935 2.0241 26 6 8.7555 7.1166 0.8999 27 7 4.5856 4.5741 -0.5895 28 7 3.8815 3.5488 -0.9224 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8462 -0.8900 34 1 3.8574 0.6435 -0.8892 35 1 3.8568 0.6438 0.8908 36 1 5.4397 2.4786 1.7338 37 1 5.9517 6.7448 -0.0759 38 1 5.8695 8.8538 1.0135 39 1 7.3886 9.0930 0.1429 40 1 6.9785 9.4834 3.0881 41 1 7.0159 10.7626 1.8532 42 1 9.3493 9.9064 1.2029 43 1 9.2418 10.6626 2.8104 44 1 12.0662 6.5450 4.4199 45 1 9.8068 6.5300 2.6883 46 1 10.7555 7.5422 1.5827 47 1 8.8488 6.0800 0.5761 48 1 8.9616 7.7780 0.0584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052369557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:14 Heat of formation + Delta-G solvation = 17.834774 kcal Electronic energy + Delta-G solvation = -29329.480206 eV Core-core repulsion = 25228.781118 eV Total energy + Delta-G solvation = -4100.699088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.32237 -40.86975 -39.16597 -39.01771 -36.32584 -35.97269 -34.45277 -32.74446 -32.45518 -31.95549 -30.73690 -27.86657 -27.39987 -25.92366 -25.14309 -25.11386 -24.11648 -22.83927 -21.64131 -21.32944 -20.90825 -19.13477 -18.51959 -17.82863 -17.56364 -17.37329 -16.91752 -16.79251 -16.63792 -16.16886 -15.99626 -15.73978 -15.56963 -15.33614 -15.23670 -14.77803 -14.57718 -14.34175 -13.98589 -13.59612 -13.52319 -13.29458 -13.18563 -12.98277 -12.82169 -12.75567 -12.46714 -12.44342 -12.20885 -12.09226 -11.98574 -11.71613 -11.48970 -11.44630 -11.38780 -11.31198 -11.12351 -10.80743 -10.47023 -10.40525 -10.01511 -8.60591 -7.81786 -5.26895 0.04922 0.58007 0.86717 1.43981 1.47678 1.56308 2.13319 2.24156 2.53973 2.64452 3.14138 3.32531 3.42226 3.70705 3.73985 3.77487 3.84908 3.91585 4.06447 4.11056 4.16686 4.41289 4.42667 4.46031 4.49580 4.51780 4.53271 4.57994 4.73041 4.75726 4.83432 4.88015 4.96726 5.05159 5.19064 5.25241 5.27727 5.30202 5.37935 5.53866 5.61509 5.65977 5.73232 5.82016 5.97658 6.45678 6.47984 6.85124 7.22216 7.22769 8.00641 8.38917 9.23491 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015840 B = 0.002397 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.205578 B =11680.377905 C =12710.517408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.054 3.946 4 C 0.120 3.880 5 N -0.348 5.348 6 C 0.114 3.886 7 C -0.118 4.118 8 C 0.596 3.404 9 O -0.571 6.571 10 N -0.700 5.700 11 C 0.164 3.836 12 H 0.058 0.942 13 C -0.105 4.105 14 C -0.131 4.131 15 C 0.147 3.853 16 N -0.604 5.604 17 C -0.257 4.257 18 H 0.066 0.934 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.290 1.290 25 C 0.196 3.804 26 C -0.132 4.132 27 N -0.214 5.214 28 N -0.079 5.079 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.143 0.857 36 H 0.233 0.767 37 H 0.414 0.586 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.246 0.754 45 H 0.032 0.968 46 H -0.003 1.003 47 H 0.049 0.951 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.053 -11.364 -11.787 27.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.024 4.024 4 C 0.000 4.000 5 N -0.134 5.134 6 C -0.043 4.043 7 C -0.257 4.257 8 C 0.381 3.619 9 O -0.449 6.449 10 N -0.350 5.350 11 C 0.060 3.940 12 H 0.076 0.924 13 C -0.142 4.142 14 C -0.171 4.171 15 C 0.021 3.979 16 N -0.326 5.326 17 C -0.388 4.388 18 H 0.083 0.917 19 C -0.247 4.247 20 N -0.582 5.582 21 Si 0.787 3.213 22 H -0.191 1.191 23 H -0.224 1.224 24 H -0.216 1.216 25 C 0.071 3.929 26 C -0.172 4.172 27 N -0.088 5.088 28 N -0.060 5.060 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.161 0.839 36 H 0.249 0.751 37 H 0.251 0.749 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.068 0.932 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.222 -11.508 -12.328 27.897 hybrid contribution 0.615 -0.477 1.620 1.797 sum -21.607 -11.985 -10.708 26.929 Atomic orbital electron populations 1.22985 0.78571 1.04358 1.01017 1.87756 1.22037 1.26563 1.95696 1.22549 0.92076 0.85706 1.02079 1.22047 0.92905 0.76327 1.08725 1.50421 1.29890 1.14009 1.19114 1.23808 0.90862 0.93991 0.95645 1.21362 1.07840 0.96483 1.00007 1.17101 0.80207 0.81816 0.82786 1.90878 1.50313 1.76564 1.27135 1.45918 1.45133 1.12431 1.31530 1.20253 0.87500 0.89643 0.96582 0.92371 1.20529 1.01655 0.91673 1.00377 1.21283 0.98209 0.99239 0.98398 1.20954 0.92815 0.87760 0.96373 1.43852 1.76503 1.09321 1.02945 1.19510 1.13893 1.21515 0.83857 0.91677 1.25734 0.95642 1.01978 1.01355 1.70220 1.16404 1.35317 1.36269 0.85342 0.77437 0.77215 0.81347 1.19073 1.22381 1.21647 1.20586 0.92323 0.89163 0.90864 1.22250 0.95495 1.00464 0.98977 1.74593 1.04186 1.19730 1.10337 1.81881 1.20589 0.90913 1.12619 0.87734 0.93173 0.93112 0.92342 0.91954 0.86059 0.83897 0.75071 0.74925 0.90577 0.90337 0.94190 0.89272 0.93436 0.94207 0.94468 0.94950 0.98530 0.93192 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.66 10.70 -148.98 -1.59 -6.25 16 3 C 0.05 0.56 6.14 71.98 0.44 1.00 16 4 C 0.12 1.08 6.91 86.38 0.60 1.68 16 5 N -0.35 -5.78 3.69 -347.11 -1.28 -7.07 16 6 C 0.11 2.23 11.27 83.85 0.95 3.17 16 7 C -0.12 -3.13 6.99 40.82 0.29 -2.85 16 8 C 0.60 20.10 7.64 86.69 0.66 20.76 16 9 O -0.57 -24.22 16.52 -4.01 -0.07 -24.28 16 10 N -0.70 -21.64 4.93 -449.67 -2.22 -23.85 16 11 C 0.16 5.95 2.06 44.16 0.09 6.05 16 12 H 0.06 2.70 6.92 -2.39 -0.02 2.69 16 13 C -0.10 -3.04 4.69 28.61 0.13 -2.90 16 14 C -0.13 -4.25 5.74 29.39 0.17 -4.08 16 15 C 0.15 5.94 5.66 87.37 0.49 6.43 16 16 N -0.60 -30.68 2.27 -698.44 -1.58 -32.27 16 17 C -0.26 -14.57 9.44 84.03 0.79 -13.78 16 18 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 19 C -0.05 -3.06 4.87 84.86 0.41 -2.65 16 20 N -0.94 -58.01 11.01 21.65 0.24 -57.77 16 21 Si 0.96 47.55 29.58 68.60 2.03 49.58 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 C 0.20 10.07 4.67 86.49 0.40 10.47 16 26 C -0.13 -5.25 5.39 30.23 0.16 -5.08 16 27 N -0.21 -5.57 12.04 -50.00 -0.60 -6.17 16 28 N -0.08 -1.81 13.65 37.02 0.51 -1.30 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.14 0.57 8.08 -2.39 -0.02 0.55 16 36 H 0.23 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.41 10.46 8.29 -92.71 -0.77 9.69 16 38 H 0.08 1.87 8.04 -2.39 -0.02 1.85 16 39 H 0.08 1.98 7.36 -2.39 -0.02 1.97 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 42 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 43 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 44 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.03 1.94 6.33 -2.39 -0.02 1.92 16 46 H 0.00 -0.19 8.03 -2.39 -0.02 -0.21 16 47 H 0.05 2.03 7.85 -2.39 -0.02 2.01 16 48 H 0.07 2.52 7.32 -2.39 -0.02 2.50 16 Total: -1.00 -77.62 391.83 2.47 -75.15 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.20 Total: 14.57 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 6.84 Total: 19.66 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -4.94 Total: -128.43 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.66 Total: -30.54 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -77.62 2.47 -75.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052369557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.989 kcal (2) G-P(sol) polarization free energy of solvation -77.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds