Wall clock time and date at job start Tue Mar 31 2020 19:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47484 * 2 1 4 4 N 1.28520 * 124.43946 * 269.70255 * 3 2 1 5 5 C 1.31140 * 109.05653 * 179.82176 * 4 3 2 6 6 C 1.50700 * 127.11172 * 180.12437 * 5 4 3 7 7 C 1.40929 * 105.77457 * 0.41462 * 5 4 3 8 8 C 1.47795 * 127.23747 * 179.72105 * 7 5 4 9 9 O 1.21562 * 119.99992 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00127 * 180.02562 * 8 7 5 11 11 C 1.46504 * 120.00298 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47218 * 180.02562 * 11 10 8 13 13 H 1.08998 * 108.56879 * 57.94454 * 12 11 10 14 14 C 1.46924 * 108.61625 * 175.75684 * 12 11 10 15 15 N 1.50118 * 106.77272 * 177.91994 * 14 12 11 16 16 C 1.36932 * 120.63324 * 111.32544 * 15 14 12 17 17 H 1.08008 * 119.99782 * 155.69241 * 16 15 14 18 18 C 1.38811 * 120.00315 * 335.68977 * 16 15 14 19 19 N 1.31616 * 119.99969 * 340.69828 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 160.69612 * 18 16 15 21 21 H 1.48499 * 109.47052 * 60.00250 * 20 18 16 22 22 H 1.48498 * 109.46933 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47292 * 300.00534 * 20 18 16 24 24 C 1.43423 * 118.72502 * 291.33905 * 15 14 12 25 25 C 1.55337 * 116.23674 * 89.36285 * 24 15 14 26 26 C 1.55191 * 108.86986 * 319.46070 * 25 24 15 27 27 O 1.39642 * 110.57240 * 322.14325 * 26 25 24 28 28 N 1.28584 * 124.44289 * 89.99704 * 3 2 1 29 29 H 1.09003 * 109.46895 * 299.99902 * 1 2 3 30 30 H 1.09001 * 109.47124 * 60.00248 * 1 2 3 31 31 H 1.08999 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47208 * 120.00280 * 2 1 3 33 33 H 1.09001 * 109.47070 * 239.99575 * 2 1 3 34 34 H 1.08997 * 109.47084 * 270.35019 * 6 5 4 35 35 H 1.08998 * 109.47299 * 30.35204 * 6 5 4 36 36 H 1.09003 * 109.46729 * 150.35018 * 6 5 4 37 37 H 0.97005 * 120.00559 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46626 * 299.99930 * 11 10 8 39 39 H 1.08997 * 109.47046 * 59.99935 * 11 10 8 40 40 H 1.08996 * 109.98817 * 297.23256 * 14 12 11 41 41 H 1.08994 * 109.98947 * 58.59976 * 14 12 11 42 42 H 0.97002 * 119.99986 * 179.97438 * 19 18 16 43 43 H 1.08996 * 108.13038 * 327.60180 * 24 15 14 44 44 H 1.09005 * 107.96233 * 210.99023 * 24 15 14 45 45 H 1.08997 * 109.56821 * 199.64500 * 25 24 15 46 46 H 1.09002 * 109.56945 * 79.27833 * 25 24 15 47 47 H 1.08997 * 109.25138 * 201.86153 * 26 25 24 48 48 H 1.09005 * 109.25673 * 82.42481 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2659 2.0646 -1.0599 5 6 2.6821 3.2585 -0.7121 6 6 3.0813 4.3854 -1.6296 7 6 2.6853 3.2676 0.6972 8 6 3.0801 4.3826 1.5834 9 8 3.4527 5.4363 1.1054 10 7 3.0270 4.2310 2.9215 11 6 3.4177 5.3364 3.8001 12 6 3.2665 4.9052 5.2603 13 1 3.8837 4.0225 5.4273 14 6 3.7587 5.9883 6.1225 15 7 3.5441 5.5447 7.5405 16 6 4.6098 5.2477 8.3475 17 1 4.5093 5.3139 9.4208 18 6 5.8192 4.8615 7.7861 19 7 5.8575 4.4147 6.5487 20 14 7.3923 4.9760 8.7869 21 1 7.2713 4.1257 9.9983 22 1 8.5368 4.5065 7.9655 23 1 7.6192 6.3863 9.1929 24 6 2.2016 5.4376 8.0336 25 6 1.5040 4.0641 7.8334 26 6 1.8625 3.5197 6.4250 27 8 1.9053 4.5590 5.4934 28 7 2.2608 2.0668 1.0604 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 4.1462 4.3139 -1.8508 35 1 2.5123 4.3179 -2.5568 36 1 2.8742 5.3394 -1.1447 37 1 2.7300 3.3901 3.3031 38 1 4.4563 5.6046 3.6064 39 1 2.7780 6.1975 3.6070 40 1 4.8203 6.1558 5.9410 41 1 3.1977 6.9026 5.9291 42 1 6.7026 4.1452 6.1563 43 1 1.5976 6.1997 7.5413 44 1 2.2170 5.6577 9.1011 45 1 0.4240 4.1882 7.9128 46 1 1.8500 3.3645 8.5943 47 1 1.1103 2.7929 6.1185 48 1 2.8369 3.0326 6.4652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073914509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:43 Heat of formation + Delta-G solvation = 55.603002 kcal Electronic energy + Delta-G solvation = -30296.283896 eV Core-core repulsion = 26197.222561 eV Total energy + Delta-G solvation = -4099.061334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.71595 -39.49146 -38.60792 -35.32181 -35.00308 -34.54339 -33.09864 -32.11514 -31.54963 -31.05303 -28.73833 -28.05979 -26.09337 -25.31839 -24.54793 -22.92357 -22.24612 -21.14849 -20.75178 -20.14628 -19.58134 -17.84681 -17.18733 -16.93350 -16.61960 -16.01785 -15.48110 -14.90685 -14.87309 -14.74676 -14.37036 -14.17508 -14.00538 -13.85123 -13.52558 -13.24779 -13.01610 -12.90495 -12.72556 -12.55256 -12.45721 -12.24522 -11.93830 -11.82381 -11.52914 -11.40474 -11.22228 -11.04353 -10.83061 -10.74033 -10.49138 -10.33774 -10.17063 -9.99534 -9.87479 -9.65432 -9.49654 -9.29153 -8.78583 -8.65931 -8.49389 -6.81659 -5.91534 -3.30252 1.32801 1.87719 1.99906 3.34345 3.36223 3.41177 3.43082 3.43711 3.84521 4.43368 4.43945 4.48047 4.68797 4.70664 4.73260 4.97509 5.16386 5.24751 5.25556 5.29027 5.42533 5.60803 5.63671 5.67623 5.75335 5.83529 5.88825 5.93682 6.01573 6.14773 6.22019 6.34465 6.41551 6.46596 6.48235 6.56969 6.68324 6.71830 6.82198 6.91967 6.96531 7.13120 7.33335 7.72077 7.75659 8.10876 8.15312 8.32761 8.41688 9.07588 9.75730 10.30159 11.17500 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.002971 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.564927 B = 9420.696596 C =10002.168594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.134 3.866 3 N -0.144 5.144 4 N -0.296 5.296 5 C 0.059 3.941 6 C -0.067 4.067 7 C -0.041 4.041 8 C 0.603 3.397 9 O -0.534 6.534 10 N -0.696 5.696 11 C 0.121 3.879 12 C 0.060 3.940 13 H 0.107 0.893 14 C 0.144 3.856 15 N -0.587 5.587 16 C -0.250 4.250 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.907 5.907 20 Si 0.904 3.096 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.161 3.839 25 C -0.172 4.172 26 C 0.068 3.932 27 O -0.369 6.369 28 N -0.247 5.247 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.406 0.594 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.020 0.980 42 H 0.256 0.744 43 H 0.032 0.968 44 H 0.033 0.967 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 -7.819 -13.177 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.046 5.046 4 N -0.137 5.137 5 C -0.105 4.105 6 C -0.126 4.126 7 C -0.205 4.205 8 C 0.386 3.614 9 O -0.410 6.410 10 N -0.346 5.346 11 C -0.003 4.003 12 C 0.001 3.999 13 H 0.125 0.875 14 C 0.019 3.981 15 N -0.308 5.308 16 C -0.379 4.379 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.010 4.010 27 O -0.288 6.288 28 N -0.095 5.095 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.241 0.759 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.122 0.878 41 H 0.038 0.962 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.240 -8.279 -13.627 18.429 hybrid contribution 1.081 -0.077 0.897 1.407 sum -8.159 -8.356 -12.731 17.276 Atomic orbital electron populations 1.22191 0.92933 1.03975 1.03860 1.22069 0.96187 0.74187 1.06058 1.48085 1.43952 1.13403 0.99203 1.73904 1.19119 1.05281 1.15406 1.23271 1.00820 0.93698 0.92740 1.20220 1.01836 0.93880 0.96651 1.23057 1.09293 0.93698 0.94413 1.16614 0.78162 0.84866 0.81767 1.90762 1.48097 1.26775 1.75353 1.45796 1.65722 1.18201 1.04841 1.21796 1.00727 0.88697 0.89100 1.22208 0.82694 1.03691 0.91280 0.87498 1.20745 1.01809 0.92310 0.83269 1.44108 1.00529 1.76040 1.10105 1.19220 0.89564 1.39229 0.89911 0.91348 1.24895 0.98925 0.98845 0.96837 1.69854 1.25409 1.45455 1.14528 0.86335 0.82982 0.77984 0.79270 1.21070 1.21647 1.21072 1.20381 0.86343 0.93211 0.96889 1.23584 0.98985 1.01564 0.97171 1.22338 1.00756 0.89013 0.88917 1.87517 1.26475 1.54142 1.60631 1.74379 1.14834 1.04498 1.15769 0.91168 0.91403 0.89467 0.87053 0.87210 0.90137 0.90886 0.88504 0.75867 0.89989 0.91583 0.87768 0.96180 0.93390 0.94984 0.94905 0.93212 0.92521 0.93141 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.13 0.97 7.24 -4.04 -0.03 0.94 16 3 N -0.14 -1.76 3.94 -10.62 -0.04 -1.80 16 4 N -0.30 -3.94 12.01 33.93 0.41 -3.53 16 5 C 0.06 0.83 7.39 -81.87 -0.61 0.22 16 6 C -0.07 -0.77 10.00 36.01 0.36 -0.41 16 7 C -0.04 -0.65 7.21 -82.68 -0.60 -1.25 16 8 C 0.60 10.48 7.83 -12.35 -0.10 10.39 16 9 O -0.53 -10.15 15.20 5.31 0.08 -10.07 16 10 N -0.70 -12.04 5.43 -61.26 -0.33 -12.37 16 11 C 0.12 2.24 5.24 -4.04 -0.02 2.22 16 12 C 0.06 1.23 1.95 -29.64 -0.06 1.17 16 13 H 0.11 2.47 5.23 -51.93 -0.27 2.20 16 14 C 0.14 3.23 4.71 -4.93 -0.02 3.21 16 15 N -0.59 -14.06 2.61 -174.50 -0.46 -14.51 16 16 C -0.25 -6.49 9.61 -15.06 -0.14 -6.64 16 17 H 0.07 1.78 7.87 -52.48 -0.41 1.36 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 19 N -0.91 -23.64 9.56 55.49 0.53 -23.11 16 20 Si 0.90 20.85 29.60 -169.99 -5.03 15.82 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.16 3.39 5.33 -4.43 -0.02 3.37 16 25 C -0.17 -3.22 6.75 -24.33 -0.16 -3.39 16 26 C 0.07 1.28 6.38 38.32 0.24 1.53 16 27 O -0.37 -7.33 9.54 -31.94 -0.30 -7.64 16 28 N -0.25 -3.57 11.84 33.42 0.40 -3.18 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.20 6.77 -51.93 -0.35 0.85 16 37 H 0.41 6.79 8.09 -40.82 -0.33 6.46 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.10 2.57 6.02 -51.93 -0.31 2.25 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 43 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 44 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.06 1.34 6.66 -51.93 -0.35 0.99 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -29.89 386.59 -7.27 -37.16 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.48 Total: 6.71 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -0.86 Total: 10.70 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.50 Total: -58.51 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.22 Total: -17.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.89 -7.27 -37.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073914509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.768 kcal (2) G-P(sol) polarization free energy of solvation -29.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds