Wall clock time and date at job start Tue Mar 31 2020 19:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47484 * 2 1 4 4 N 1.28520 * 124.43946 * 269.70255 * 3 2 1 5 5 C 1.31140 * 109.05653 * 179.82176 * 4 3 2 6 6 C 1.50700 * 127.11172 * 180.12437 * 5 4 3 7 7 C 1.40929 * 105.77457 * 0.41462 * 5 4 3 8 8 C 1.47795 * 127.23747 * 179.72105 * 7 5 4 9 9 O 1.21562 * 119.99992 * 0.02562 * 8 7 5 10 10 N 1.34772 * 120.00127 * 180.02562 * 8 7 5 11 11 C 1.46504 * 120.00298 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47218 * 180.02562 * 11 10 8 13 13 H 1.08998 * 108.56879 * 57.94454 * 12 11 10 14 14 C 1.46924 * 108.61625 * 175.75684 * 12 11 10 15 15 N 1.50118 * 106.77272 * 177.91994 * 14 12 11 16 16 C 1.36932 * 120.63324 * 111.32544 * 15 14 12 17 17 H 1.08008 * 119.99782 * 155.69241 * 16 15 14 18 18 C 1.38811 * 120.00315 * 335.68977 * 16 15 14 19 19 N 1.31616 * 119.99969 * 340.69828 * 18 16 15 20 20 Si 1.86803 * 119.99992 * 160.69612 * 18 16 15 21 21 H 1.48499 * 109.47052 * 60.00250 * 20 18 16 22 22 H 1.48498 * 109.46933 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47292 * 300.00534 * 20 18 16 24 24 C 1.43423 * 118.72502 * 291.33905 * 15 14 12 25 25 C 1.55337 * 116.23674 * 89.36285 * 24 15 14 26 26 C 1.55191 * 108.86986 * 319.46070 * 25 24 15 27 27 O 1.39642 * 110.57240 * 322.14325 * 26 25 24 28 28 N 1.28584 * 124.44289 * 89.99704 * 3 2 1 29 29 H 1.09003 * 109.46895 * 299.99902 * 1 2 3 30 30 H 1.09001 * 109.47124 * 60.00248 * 1 2 3 31 31 H 1.08999 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47208 * 120.00280 * 2 1 3 33 33 H 1.09001 * 109.47070 * 239.99575 * 2 1 3 34 34 H 1.08997 * 109.47084 * 270.35019 * 6 5 4 35 35 H 1.08998 * 109.47299 * 30.35204 * 6 5 4 36 36 H 1.09003 * 109.46729 * 150.35018 * 6 5 4 37 37 H 0.97005 * 120.00559 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46626 * 299.99930 * 11 10 8 39 39 H 1.08997 * 109.47046 * 59.99935 * 11 10 8 40 40 H 1.08996 * 109.98817 * 297.23256 * 14 12 11 41 41 H 1.08994 * 109.98947 * 58.59976 * 14 12 11 42 42 H 0.97002 * 119.99986 * 179.97438 * 19 18 16 43 43 H 1.08996 * 108.13038 * 327.60180 * 24 15 14 44 44 H 1.09005 * 107.96233 * 210.99023 * 24 15 14 45 45 H 1.08997 * 109.56821 * 199.64500 * 25 24 15 46 46 H 1.09002 * 109.56945 * 79.27833 * 25 24 15 47 47 H 1.08997 * 109.25138 * 201.86153 * 26 25 24 48 48 H 1.09005 * 109.25673 * 82.42481 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2659 2.0646 -1.0599 5 6 2.6821 3.2585 -0.7121 6 6 3.0813 4.3854 -1.6296 7 6 2.6853 3.2676 0.6972 8 6 3.0801 4.3826 1.5834 9 8 3.4527 5.4363 1.1054 10 7 3.0270 4.2310 2.9215 11 6 3.4177 5.3364 3.8001 12 6 3.2665 4.9052 5.2603 13 1 3.8837 4.0225 5.4273 14 6 3.7587 5.9883 6.1225 15 7 3.5441 5.5447 7.5405 16 6 4.6098 5.2477 8.3475 17 1 4.5093 5.3139 9.4208 18 6 5.8192 4.8615 7.7861 19 7 5.8575 4.4147 6.5487 20 14 7.3923 4.9760 8.7869 21 1 7.2713 4.1257 9.9983 22 1 8.5368 4.5065 7.9655 23 1 7.6192 6.3863 9.1929 24 6 2.2016 5.4376 8.0336 25 6 1.5040 4.0641 7.8334 26 6 1.8625 3.5197 6.4250 27 8 1.9053 4.5590 5.4934 28 7 2.2608 2.0668 1.0604 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 4.1462 4.3139 -1.8508 35 1 2.5123 4.3179 -2.5568 36 1 2.8742 5.3394 -1.1447 37 1 2.7300 3.3901 3.3031 38 1 4.4563 5.6046 3.6064 39 1 2.7780 6.1975 3.6070 40 1 4.8203 6.1558 5.9410 41 1 3.1977 6.9026 5.9291 42 1 6.7026 4.1452 6.1563 43 1 1.5976 6.1997 7.5413 44 1 2.2170 5.6577 9.1011 45 1 0.4240 4.1882 7.9128 46 1 1.8500 3.3645 8.5943 47 1 1.1103 2.7929 6.1185 48 1 2.8369 3.0326 6.4652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073914509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:41 Heat of formation + Delta-G solvation = 35.464399 kcal Electronic energy + Delta-G solvation = -30297.157171 eV Core-core repulsion = 26197.222561 eV Total energy + Delta-G solvation = -4099.934610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.75012 -41.01448 -40.12087 -36.79762 -36.20169 -35.93631 -34.24937 -33.72488 -32.92529 -32.30288 -30.35111 -29.04757 -27.51346 -27.06441 -25.80414 -24.25724 -23.43374 -22.43919 -22.08286 -21.49092 -21.27004 -19.11730 -18.76468 -18.15264 -17.70300 -17.60236 -16.97535 -16.61737 -16.33120 -15.89914 -15.86213 -15.53459 -15.39201 -14.91005 -14.81829 -14.65425 -14.30761 -14.18475 -13.89157 -13.82898 -13.55252 -13.42699 -13.26813 -13.04184 -12.94737 -12.60256 -12.59823 -12.50375 -12.35986 -12.30496 -12.07421 -11.92086 -11.78392 -11.41281 -11.38159 -11.26822 -11.17017 -10.54834 -10.36482 -10.27390 -10.04656 -8.70750 -7.88087 -5.28924 0.17986 0.80832 1.17385 1.49093 1.52850 1.57899 2.05473 2.13123 2.53403 2.80949 3.11378 3.29009 3.51440 3.62041 3.81817 3.90456 3.95283 4.14514 4.22359 4.27602 4.37056 4.42414 4.43110 4.55302 4.60288 4.69646 4.75191 4.75894 4.77816 4.79203 4.79884 4.94263 4.97467 5.08222 5.14322 5.18337 5.18610 5.26833 5.34317 5.37864 5.42286 5.50908 5.56819 5.69263 6.36476 6.40796 6.51754 6.98877 7.09296 7.12364 7.84506 8.37449 9.17592 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.002971 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.564927 B = 9420.696596 C =10002.168594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.130 5.130 4 N -0.296 5.296 5 C 0.051 3.949 6 C -0.065 4.065 7 C -0.070 4.070 8 C 0.605 3.395 9 O -0.555 6.555 10 N -0.694 5.694 11 C 0.133 3.867 12 C 0.079 3.921 13 H 0.083 0.917 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.265 4.265 17 H 0.063 0.937 18 C -0.036 4.036 19 N -0.917 5.917 20 Si 0.959 3.041 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.285 1.285 24 C 0.154 3.846 25 C -0.164 4.164 26 C 0.069 3.931 27 O -0.368 6.368 28 N -0.253 5.253 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.135 0.865 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.410 0.590 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.028 0.972 42 H 0.251 0.749 43 H 0.036 0.964 44 H 0.032 0.968 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.278 -9.293 -13.895 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.001 3.999 3 N -0.035 5.035 4 N -0.138 5.138 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.231 4.231 8 C 0.389 3.611 9 O -0.433 6.433 10 N -0.344 5.344 11 C 0.008 3.992 12 C 0.020 3.980 13 H 0.100 0.900 14 C 0.021 3.979 15 N -0.323 5.323 16 C -0.394 4.394 17 H 0.081 0.919 18 C -0.232 4.232 19 N -0.563 5.563 20 Si 0.788 3.212 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.211 1.211 24 C 0.026 3.974 25 C -0.205 4.205 26 C -0.009 4.009 27 O -0.287 6.287 28 N -0.102 5.102 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.245 0.755 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.100 0.900 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.472 -9.757 -14.339 20.260 hybrid contribution 1.374 0.293 1.118 1.795 sum -9.098 -9.465 -13.221 18.632 Atomic orbital electron populations 1.22170 0.91845 1.05647 1.02583 1.22668 0.97066 0.72039 1.08133 1.48723 1.41996 1.14367 0.98439 1.73916 1.19210 1.05055 1.15634 1.23647 1.00587 0.94553 0.92454 1.20270 1.02704 0.92398 0.96964 1.22804 1.11564 0.93888 0.94850 1.16809 0.77496 0.85155 0.81675 1.90740 1.49050 1.27818 1.75675 1.45689 1.65884 1.17894 1.04888 1.21521 1.00134 0.89166 0.88359 1.21774 0.82615 1.01779 0.91826 0.89954 1.20669 1.00565 0.93324 0.83373 1.44240 1.01223 1.76447 1.10397 1.19374 0.90656 1.39363 0.90044 0.91885 1.25471 1.00934 0.98968 0.97820 1.69992 1.25270 1.45711 1.15295 0.85478 0.79992 0.77626 0.78061 1.20733 1.22085 1.21138 1.20501 0.85328 0.94822 0.96763 1.23494 1.00360 0.99748 0.96879 1.22383 1.00319 0.89133 0.89080 1.87512 1.25720 1.54517 1.60902 1.74330 1.14885 1.04330 1.16695 0.92792 0.92226 0.86310 0.85469 0.84733 0.89294 0.88650 0.89765 0.75492 0.91126 0.91382 0.90161 0.95432 0.93990 0.94588 0.95000 0.90353 0.92748 0.89971 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.24 71.98 0.74 -0.87 16 2 C 0.12 1.40 7.24 86.38 0.63 2.03 16 3 N -0.13 -2.98 3.94 -187.50 -0.74 -3.72 16 4 N -0.30 -7.43 12.01 -46.58 -0.56 -7.99 16 5 C 0.05 1.39 7.39 43.32 0.32 1.71 16 6 C -0.06 -1.43 10.00 71.24 0.71 -0.72 16 7 C -0.07 -2.18 7.21 42.24 0.30 -1.88 16 8 C 0.60 21.22 7.83 86.77 0.68 21.90 16 9 O -0.56 -21.46 15.20 -3.91 -0.06 -21.52 16 10 N -0.69 -24.22 5.43 -466.01 -2.53 -26.75 16 11 C 0.13 5.02 5.24 86.38 0.45 5.47 16 12 C 0.08 3.27 1.95 28.71 0.06 3.32 16 13 H 0.08 3.89 5.23 -2.39 -0.01 3.88 16 14 C 0.15 6.66 4.71 83.79 0.39 7.05 16 15 N -0.60 -28.97 2.61 -705.98 -1.84 -30.81 16 16 C -0.26 -13.87 9.61 84.03 0.81 -13.06 16 17 H 0.06 3.30 7.87 -2.91 -0.02 3.28 16 18 C -0.04 -1.85 4.92 84.86 0.42 -1.44 16 19 N -0.92 -48.72 9.56 21.65 0.21 -48.51 16 20 Si 0.96 43.22 29.60 68.60 2.03 45.25 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 C 0.15 6.38 5.33 87.75 0.47 6.85 16 25 C -0.16 -5.86 6.75 32.15 0.22 -5.64 16 26 C 0.07 2.51 6.38 72.73 0.46 2.97 16 27 O -0.37 -14.29 9.54 -137.21 -1.31 -15.60 16 28 N -0.25 -7.09 11.84 -48.16 -0.57 -7.66 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 2.08 6.77 -2.39 -0.02 2.07 16 37 H 0.41 13.72 8.09 -92.70 -0.75 12.97 16 38 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 40 H 0.08 4.07 6.02 -2.39 -0.01 4.06 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 43 H 0.04 1.44 7.99 -2.39 -0.02 1.42 16 44 H 0.03 1.30 7.95 -2.38 -0.02 1.29 16 45 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 47 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.04 1.52 6.66 -2.38 -0.02 1.50 16 Total: -1.00 -64.17 386.59 1.51 -62.66 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.23 Total: 26.96 kcal Atomic # 6 Polarization: 21.05 SS G_CDS: 6.66 Total: 27.71 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.04 Total: -125.45 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.37 Total: -37.13 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -64.17 1.51 -62.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073914509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.127 kcal (2) G-P(sol) polarization free energy of solvation -64.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds