Wall clock time and date at job start Tue Mar 31 2020 21:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99651 * 2 1 4 4 C 1.46896 * 111.00236 * 123.95644 * 2 1 3 5 5 C 1.53000 * 109.46895 * 66.04602 * 4 2 1 6 6 N 1.46503 * 109.47057 * 179.97438 * 5 4 2 7 7 C 1.35031 * 124.88551 * 125.02466 * 6 5 4 8 8 C 1.35367 * 107.22836 * 179.72678 * 7 6 5 9 9 C 1.41499 * 105.50202 * 0.41620 * 8 7 6 10 10 C 1.47704 * 126.51703 * 179.84883 * 9 8 7 11 11 O 1.21574 * 120.00087 * 359.70561 * 10 9 8 12 12 N 1.34779 * 120.00219 * 179.71194 * 10 9 8 13 13 C 1.46503 * 120.00230 * 179.97438 * 12 10 9 14 14 H 1.09005 * 110.88434 * 37.42392 * 13 12 10 15 15 C 1.54908 * 111.00307 * 273.54287 * 13 12 10 16 16 N 1.47428 * 104.82898 * 204.87636 * 15 13 12 17 17 C 1.36937 * 125.64294 * 204.09209 * 16 15 13 18 18 H 1.08000 * 120.00371 * 349.86416 * 17 16 15 19 19 C 1.38814 * 119.99400 * 169.87130 * 17 16 15 20 20 N 1.31621 * 119.99976 * 152.79973 * 19 17 16 21 21 Si 1.86801 * 119.99998 * 332.79341 * 19 17 16 22 22 H 1.48497 * 109.46977 * 85.30012 * 21 19 17 23 23 H 1.48498 * 109.47297 * 325.29796 * 21 19 17 24 24 H 1.48499 * 109.46959 * 205.29610 * 21 19 17 25 25 C 1.47016 * 108.70227 * 24.35981 * 16 15 13 26 26 C 1.54331 * 107.26976 * 358.58106 * 25 16 15 27 27 H 1.09001 * 110.51639 * 96.44889 * 26 25 16 28 28 O 1.42900 * 111.00309 * 219.60250 * 26 25 16 29 29 N 1.28471 * 124.88620 * 305.02793 * 6 5 4 30 30 H 1.09000 * 109.46974 * 296.04258 * 1 2 3 31 31 H 1.09002 * 109.47473 * 56.04287 * 1 2 3 32 32 H 1.09002 * 109.47173 * 176.04769 * 1 2 3 33 33 H 1.08997 * 109.46431 * 183.95427 * 3 2 1 34 34 H 1.08993 * 109.47546 * 303.95658 * 3 2 1 35 35 H 1.09001 * 109.46735 * 63.96224 * 3 2 1 36 36 H 1.09004 * 109.47093 * 306.05026 * 4 2 1 37 37 H 1.08997 * 109.46987 * 186.04624 * 4 2 1 38 38 H 1.08996 * 109.47234 * 59.99777 * 5 4 2 39 39 H 1.08997 * 109.47321 * 299.99817 * 5 4 2 40 40 H 1.08000 * 126.38682 * 359.97438 * 7 6 5 41 41 H 1.08004 * 127.24452 * 180.25907 * 8 7 6 42 42 H 0.97001 * 119.99577 * 359.97438 * 12 10 9 43 43 H 1.08996 * 110.36378 * 86.04170 * 15 13 12 44 44 H 1.08997 * 110.36708 * 323.71642 * 15 13 12 45 45 H 0.97003 * 119.99648 * 5.05098 * 20 19 17 46 46 H 1.09001 * 109.88088 * 118.12527 * 25 16 15 47 47 H 1.09002 * 109.88269 * 239.28998 * 25 16 15 48 48 H 0.96693 * 114.00116 * 293.77680 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9701 6 7 2.1571 -3.0067 2.1043 7 6 1.4194 -3.8036 2.9069 8 6 2.2594 -4.3350 3.8258 9 6 3.5346 -3.7993 3.5271 10 6 4.7938 -4.0724 4.2492 11 8 4.7951 -4.8207 5.2073 12 7 5.9414 -3.4920 3.8460 13 6 7.1903 -3.7624 4.5625 14 1 7.2355 -4.8025 4.8857 15 6 7.3607 -2.7997 5.7641 16 7 8.8154 -2.7393 5.9959 17 6 9.4220 -2.4160 7.1803 18 1 8.8361 -2.0203 7.9967 19 6 10.7900 -2.5968 7.3313 20 7 11.4636 -1.8461 8.1770 21 14 11.6749 -3.9055 6.3344 22 1 12.0449 -3.3510 5.0075 23 1 10.7803 -5.0762 6.1497 24 1 12.9029 -4.3295 7.0537 25 6 9.5068 -3.0773 4.7433 26 6 8.4220 -3.3963 3.6929 27 1 8.2141 -2.5193 3.0799 28 8 8.8103 -4.5020 2.8751 29 7 3.3861 -3.0149 2.4783 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0827 1.3432 -0.0709 34 1 1.5898 1.9164 -0.8523 35 1 1.7044 1.8723 0.9234 36 1 1.5611 -0.3873 2.0628 37 1 3.0798 -0.6611 1.1755 38 1 2.0658 -2.6213 0.0449 39 1 0.5473 -2.3475 0.9322 40 1 0.3580 -3.9863 2.8277 41 1 2.0086 -5.0212 4.6212 42 1 5.9405 -2.8952 3.0813 43 1 6.8527 -3.1965 6.6430 44 1 6.9747 -1.8111 5.5158 45 1 10.9943 -1.2175 8.7476 46 1 10.1087 -2.2311 4.4121 47 1 10.1419 -3.9502 4.8943 48 1 9.5760 -4.3249 2.3119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077014358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:28 Heat of formation + Delta-G solvation = 48.320417 kcal Electronic energy + Delta-G solvation = -29221.440612 eV Core-core repulsion = 25122.063481 eV Total energy + Delta-G solvation = -4099.377131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.86184 -39.57928 -38.29564 -37.94544 -35.31307 -34.15081 -33.94606 -31.98721 -30.93787 -29.78044 -28.56465 -28.19007 -27.67243 -25.56666 -24.05353 -22.90208 -21.81166 -21.47283 -21.03938 -20.27689 -19.87298 -18.18034 -17.50813 -17.24870 -16.81915 -16.47535 -16.03456 -16.02322 -15.52625 -15.08501 -14.81438 -14.59643 -14.24523 -14.15067 -13.92343 -13.64038 -13.48231 -13.39028 -13.07858 -12.99237 -12.63800 -12.57760 -12.27541 -12.25487 -12.18161 -11.88068 -11.70447 -11.67046 -11.07672 -11.03418 -10.63298 -10.26495 -10.11820 -9.87028 -9.47197 -9.45547 -9.26775 -9.16564 -9.04769 -8.83302 -8.41831 -7.12866 -6.32695 -3.18512 1.48092 1.98178 2.07147 3.22272 3.40239 3.40766 3.51085 3.56798 3.72385 3.92083 4.27939 4.31916 4.47099 4.50497 4.57366 4.60179 4.67566 4.77044 4.87173 4.90805 5.00492 5.04287 5.20293 5.25162 5.26563 5.28588 5.34363 5.35170 5.39443 5.47638 5.53014 5.60819 5.87005 5.91506 6.18582 6.28668 6.32618 6.38744 6.42954 6.49253 6.52349 6.61755 6.79736 7.53684 7.67397 7.81656 7.83060 8.33747 8.37675 9.03471 9.57490 10.22815 11.15402 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002441 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.400917 B =11465.616149 C =12147.385764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.041 3.959 5 C 0.125 3.875 6 N -0.283 5.283 7 C -0.021 4.021 8 C -0.177 4.177 9 C -0.009 4.009 10 C 0.603 3.397 11 O -0.528 6.528 12 N -0.702 5.702 13 C 0.138 3.862 14 H 0.107 0.893 15 C 0.129 3.871 16 N -0.603 5.603 17 C -0.330 4.330 18 H 0.080 0.920 19 C -0.019 4.019 20 N -0.916 5.916 21 Si 1.067 2.933 22 H -0.295 1.295 23 H -0.289 1.289 24 H -0.298 1.298 25 C 0.090 3.910 26 C 0.087 3.913 27 H 0.070 0.930 28 O -0.558 6.558 29 N -0.260 5.260 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.181 0.819 41 H 0.163 0.837 42 H 0.403 0.597 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.263 0.737 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.430 2.369 -20.712 32.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.088 4.088 5 C 0.005 3.995 6 N -0.072 5.072 7 C -0.163 4.163 8 C -0.205 4.205 9 C -0.169 4.169 10 C 0.387 3.613 11 O -0.402 6.402 12 N -0.353 5.353 13 C 0.032 3.968 14 H 0.125 0.875 15 C 0.002 3.998 16 N -0.331 5.331 17 C -0.457 4.457 18 H 0.097 0.903 19 C -0.220 4.220 20 N -0.556 5.556 21 Si 0.901 3.099 22 H -0.223 1.223 23 H -0.217 1.217 24 H -0.226 1.226 25 C -0.036 4.036 26 C 0.027 3.973 27 H 0.088 0.912 28 O -0.363 6.363 29 N -0.096 5.096 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.198 0.802 41 H 0.181 0.819 42 H 0.238 0.762 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.696 1.478 -21.184 31.081 hybrid contribution -1.922 1.103 0.902 2.393 sum -24.617 2.581 -20.281 32.000 Atomic orbital electron populations 1.22534 0.87213 1.02424 1.01139 1.61903 1.08134 1.14707 1.42114 1.22404 1.01308 0.87743 1.00887 1.22369 1.02508 0.91650 0.92235 1.21952 0.99750 0.91157 0.86688 1.45447 1.04625 1.33487 1.23668 1.22846 0.99423 0.98946 0.95100 1.21806 0.91062 1.05035 1.02559 1.22013 0.95863 1.01846 0.97213 1.16858 0.81534 0.80026 0.82869 1.90822 1.85522 1.36685 1.27180 1.45719 1.07296 1.48518 1.33773 1.22337 0.80444 1.02073 0.91925 0.87520 1.21960 0.87040 0.95526 0.95299 1.44607 0.99548 1.82416 1.06559 1.20047 0.93486 1.40904 0.91261 0.90273 1.25813 0.93116 1.01094 1.02004 1.70931 1.36242 1.22242 1.26207 0.83752 0.74916 0.76847 0.74422 1.22303 1.21698 1.22624 1.22341 0.94792 0.99107 0.87331 1.23040 0.94511 0.88489 0.91263 0.91239 1.86527 1.52393 1.39051 1.58333 1.73468 1.01144 1.20720 1.14232 0.95222 0.90821 0.91181 0.90775 0.90858 0.95255 0.93811 0.88645 0.87888 0.87975 0.80202 0.81924 0.76175 0.92377 0.95132 0.92643 0.93592 0.94030 0.77518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.32 60.07 0.56 0.62 16 2 N -0.54 -3.16 5.02 -251.26 -1.26 -4.42 16 3 C 0.02 0.13 9.57 60.07 0.57 0.71 16 4 C 0.04 0.27 5.06 -3.83 -0.02 0.25 16 5 C 0.13 0.72 6.32 -4.04 -0.03 0.70 16 6 N -0.28 -2.58 3.41 -61.33 -0.21 -2.79 16 7 C -0.02 -0.18 11.40 -17.17 -0.20 -0.37 16 8 C -0.18 -2.05 10.81 -39.36 -0.43 -2.48 16 9 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 10 C 0.60 10.29 7.82 -12.39 -0.10 10.19 16 11 O -0.53 -10.78 16.67 5.30 0.09 -10.69 16 12 N -0.70 -11.31 5.23 -52.71 -0.28 -11.58 16 13 C 0.14 2.62 3.04 -65.78 -0.20 2.42 16 14 H 0.11 2.29 7.73 -51.93 -0.40 1.89 16 15 C 0.13 2.81 6.93 -2.53 -0.02 2.80 16 16 N -0.60 -15.34 3.28 -170.07 -0.56 -15.90 16 17 C -0.33 -9.71 10.43 -15.06 -0.16 -9.86 16 18 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 19 C -0.02 -0.58 5.43 -17.43 -0.09 -0.67 16 20 N -0.92 -28.97 13.70 55.49 0.76 -28.21 16 21 Si 1.07 27.41 24.69 -169.99 -4.20 23.21 16 22 H -0.29 -6.97 6.80 56.52 0.38 -6.59 16 23 H -0.29 -7.30 6.75 56.52 0.38 -6.92 16 24 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 25 C 0.09 1.99 4.78 -3.06 -0.01 1.98 16 26 C 0.09 1.53 3.94 -24.89 -0.10 1.43 16 27 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 28 O -0.56 -8.99 13.40 -35.23 -0.47 -9.47 16 29 N -0.26 -3.16 11.36 33.42 0.38 -2.78 16 30 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.07 0.19 6.47 -51.93 -0.34 -0.14 16 33 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 34 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 37 H 0.10 0.77 8.00 -51.93 -0.42 0.35 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.32 6.45 -51.93 -0.34 -0.02 16 40 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.40 5.56 8.24 -40.82 -0.34 5.22 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 46 H 0.05 1.02 7.97 -51.93 -0.41 0.60 16 47 H 0.04 0.99 3.51 -51.93 -0.18 0.80 16 48 H 0.38 4.28 9.12 45.56 0.42 4.70 16 LS Contribution 391.00 15.07 5.89 5.89 Total: -1.00 -37.30 391.00 -7.33 -44.64 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.68 Total: 5.12 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.80 Total: 6.98 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -1.16 Total: -65.68 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.38 Total: -20.16 kcal Atomic # 14 Polarization: 27.41 SS G_CDS: -4.20 Total: 23.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.30 -7.33 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077014358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.957 kcal (2) G-P(sol) polarization free energy of solvation -37.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds