Wall clock time and date at job start Tue Mar 31 2020 21:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99651 * 2 1 4 4 C 1.46896 * 111.00236 * 123.95644 * 2 1 3 5 5 C 1.53000 * 109.46895 * 66.04602 * 4 2 1 6 6 N 1.46503 * 109.47057 * 179.97438 * 5 4 2 7 7 C 1.35031 * 124.88551 * 125.02466 * 6 5 4 8 8 C 1.35367 * 107.22836 * 179.72678 * 7 6 5 9 9 C 1.41499 * 105.50202 * 0.41620 * 8 7 6 10 10 C 1.47704 * 126.51703 * 179.84883 * 9 8 7 11 11 O 1.21574 * 120.00087 * 359.70561 * 10 9 8 12 12 N 1.34779 * 120.00219 * 179.71194 * 10 9 8 13 13 C 1.46503 * 120.00230 * 179.97438 * 12 10 9 14 14 H 1.09005 * 110.88434 * 37.42392 * 13 12 10 15 15 C 1.54908 * 111.00307 * 273.54287 * 13 12 10 16 16 N 1.47428 * 104.82898 * 204.87636 * 15 13 12 17 17 C 1.36937 * 125.64294 * 204.09209 * 16 15 13 18 18 H 1.08000 * 120.00371 * 349.86416 * 17 16 15 19 19 C 1.38814 * 119.99400 * 169.87130 * 17 16 15 20 20 N 1.31621 * 119.99976 * 152.79973 * 19 17 16 21 21 Si 1.86801 * 119.99998 * 332.79341 * 19 17 16 22 22 H 1.48497 * 109.46977 * 85.30012 * 21 19 17 23 23 H 1.48498 * 109.47297 * 325.29796 * 21 19 17 24 24 H 1.48499 * 109.46959 * 205.29610 * 21 19 17 25 25 C 1.47016 * 108.70227 * 24.35981 * 16 15 13 26 26 C 1.54331 * 107.26976 * 358.58106 * 25 16 15 27 27 H 1.09001 * 110.51639 * 96.44889 * 26 25 16 28 28 O 1.42900 * 111.00309 * 219.60250 * 26 25 16 29 29 N 1.28471 * 124.88620 * 305.02793 * 6 5 4 30 30 H 1.09000 * 109.46974 * 296.04258 * 1 2 3 31 31 H 1.09002 * 109.47473 * 56.04287 * 1 2 3 32 32 H 1.09002 * 109.47173 * 176.04769 * 1 2 3 33 33 H 1.08997 * 109.46431 * 183.95427 * 3 2 1 34 34 H 1.08993 * 109.47546 * 303.95658 * 3 2 1 35 35 H 1.09001 * 109.46735 * 63.96224 * 3 2 1 36 36 H 1.09004 * 109.47093 * 306.05026 * 4 2 1 37 37 H 1.08997 * 109.46987 * 186.04624 * 4 2 1 38 38 H 1.08996 * 109.47234 * 59.99777 * 5 4 2 39 39 H 1.08997 * 109.47321 * 299.99817 * 5 4 2 40 40 H 1.08000 * 126.38682 * 359.97438 * 7 6 5 41 41 H 1.08004 * 127.24452 * 180.25907 * 8 7 6 42 42 H 0.97001 * 119.99577 * 359.97438 * 12 10 9 43 43 H 1.08996 * 110.36378 * 86.04170 * 15 13 12 44 44 H 1.08997 * 110.36708 * 323.71642 * 15 13 12 45 45 H 0.97003 * 119.99648 * 5.05098 * 20 19 17 46 46 H 1.09001 * 109.88088 * 118.12527 * 25 16 15 47 47 H 1.09002 * 109.88269 * 239.28998 * 25 16 15 48 48 H 0.96693 * 114.00116 * 293.77680 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9701 6 7 2.1571 -3.0067 2.1043 7 6 1.4194 -3.8036 2.9069 8 6 2.2594 -4.3350 3.8258 9 6 3.5346 -3.7993 3.5271 10 6 4.7938 -4.0724 4.2492 11 8 4.7951 -4.8207 5.2073 12 7 5.9414 -3.4920 3.8460 13 6 7.1903 -3.7624 4.5625 14 1 7.2355 -4.8025 4.8857 15 6 7.3607 -2.7997 5.7641 16 7 8.8154 -2.7393 5.9959 17 6 9.4220 -2.4160 7.1803 18 1 8.8361 -2.0203 7.9967 19 6 10.7900 -2.5968 7.3313 20 7 11.4636 -1.8461 8.1770 21 14 11.6749 -3.9055 6.3344 22 1 12.0449 -3.3510 5.0075 23 1 10.7803 -5.0762 6.1497 24 1 12.9029 -4.3295 7.0537 25 6 9.5068 -3.0773 4.7433 26 6 8.4220 -3.3963 3.6929 27 1 8.2141 -2.5193 3.0799 28 8 8.8103 -4.5020 2.8751 29 7 3.3861 -3.0149 2.4783 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3633 -1.0252 -0.0708 33 1 3.0827 1.3432 -0.0709 34 1 1.5898 1.9164 -0.8523 35 1 1.7044 1.8723 0.9234 36 1 1.5611 -0.3873 2.0628 37 1 3.0798 -0.6611 1.1755 38 1 2.0658 -2.6213 0.0449 39 1 0.5473 -2.3475 0.9322 40 1 0.3580 -3.9863 2.8277 41 1 2.0086 -5.0212 4.6212 42 1 5.9405 -2.8952 3.0813 43 1 6.8527 -3.1965 6.6430 44 1 6.9747 -1.8111 5.5158 45 1 10.9943 -1.2175 8.7476 46 1 10.1087 -2.2311 4.4121 47 1 10.1419 -3.9502 4.8943 48 1 9.5760 -4.3249 2.3119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077014358.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:26 Heat of formation + Delta-G solvation = 14.897762 kcal Electronic energy + Delta-G solvation = -29222.889927 eV Core-core repulsion = 25122.063481 eV Total energy + Delta-G solvation = -4100.826446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.67443 -41.02417 -39.53127 -38.66316 -36.86255 -35.70973 -34.68288 -34.02677 -31.80969 -30.80339 -30.00533 -29.29986 -28.51709 -26.57130 -25.57024 -23.93460 -22.80754 -22.49683 -22.18486 -21.86049 -21.02555 -19.75052 -18.94545 -18.58259 -17.76579 -17.60911 -17.22427 -16.61674 -16.50453 -16.20449 -15.93495 -15.88567 -15.55735 -15.30205 -15.26115 -14.88846 -14.66269 -14.44785 -14.28403 -14.01088 -13.98625 -13.56840 -13.48947 -13.37238 -13.04570 -12.99717 -12.66700 -12.56896 -12.56372 -12.21165 -11.93572 -11.82474 -11.67459 -11.48115 -11.38416 -11.00476 -10.57923 -10.43486 -10.20335 -10.03957 -9.46644 -9.26627 -8.70090 -5.49679 0.47364 1.17779 1.35020 1.40134 1.52017 1.70376 1.96904 2.31022 2.46245 2.83267 2.92755 3.10544 3.27985 3.30273 3.57639 3.69449 3.76873 3.85287 3.92999 3.96613 4.10690 4.19828 4.23459 4.28152 4.35169 4.45546 4.58668 4.62765 4.67086 4.71864 4.73263 4.75604 4.78102 4.81919 4.84397 4.90932 5.00032 5.04584 5.25233 5.33439 5.50557 5.80213 5.88955 5.98210 6.03371 6.35717 6.74574 6.80197 6.86780 7.09908 7.36448 8.01912 8.78208 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015609 B = 0.002441 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.400917 B =11465.616149 C =12147.385764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.550 5.550 3 C 0.023 3.977 4 C 0.046 3.954 5 C 0.123 3.877 6 N -0.274 5.274 7 C 0.007 3.993 8 C -0.203 4.203 9 C -0.041 4.041 10 C 0.600 3.400 11 O -0.572 6.572 12 N -0.690 5.690 13 C 0.149 3.851 14 H 0.079 0.921 15 C 0.130 3.870 16 N -0.623 5.623 17 C -0.327 4.327 18 H 0.045 0.955 19 C -0.072 4.072 20 N -0.946 5.946 21 Si 1.110 2.890 22 H -0.257 1.257 23 H -0.286 1.286 24 H -0.303 1.303 25 C 0.080 3.920 26 C 0.110 3.890 27 H 0.109 0.891 28 O -0.563 6.563 29 N -0.267 5.267 30 H 0.027 0.973 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.231 0.769 41 H 0.162 0.838 42 H 0.417 0.583 43 H 0.031 0.969 44 H 0.044 0.956 45 H 0.250 0.750 46 H 0.053 0.947 47 H 0.034 0.966 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.612 2.129 -24.788 36.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.275 5.275 3 C -0.125 4.125 4 C -0.083 4.083 5 C 0.004 3.996 6 N -0.063 5.063 7 C -0.136 4.136 8 C -0.231 4.231 9 C -0.200 4.200 10 C 0.387 3.613 11 O -0.450 6.450 12 N -0.341 5.341 13 C 0.042 3.958 14 H 0.098 0.902 15 C 0.003 3.997 16 N -0.352 5.352 17 C -0.455 4.455 18 H 0.063 0.937 19 C -0.266 4.266 20 N -0.588 5.588 21 Si 0.937 3.063 22 H -0.182 1.182 23 H -0.214 1.214 24 H -0.231 1.231 25 C -0.045 4.045 26 C 0.049 3.951 27 H 0.127 0.873 28 O -0.371 6.371 29 N -0.105 5.105 30 H 0.046 0.954 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.157 0.843 40 H 0.247 0.753 41 H 0.179 0.821 42 H 0.255 0.745 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -24.897 1.274 -25.341 35.548 hybrid contribution -1.435 1.258 2.139 2.867 sum -26.332 2.531 -23.201 35.186 Atomic orbital electron populations 1.22631 0.85876 1.03708 1.01333 1.61942 1.09366 1.14672 1.41487 1.22431 1.01059 0.87871 1.01167 1.22243 1.01327 0.92441 0.92266 1.22272 1.01802 0.89983 0.85569 1.45837 1.03821 1.32852 1.23818 1.23478 1.00934 0.96401 0.92748 1.22008 0.90862 1.06167 1.04033 1.21657 0.95241 1.04327 0.98766 1.17338 0.82552 0.79064 0.82371 1.90788 1.86319 1.38645 1.29224 1.45507 1.06203 1.48666 1.33743 1.21867 0.82714 0.99535 0.91664 0.90238 1.21976 0.85082 0.96759 0.95864 1.44637 1.01302 1.82561 1.06690 1.19924 0.93599 1.39803 0.92195 0.93718 1.27074 0.94344 1.02189 1.03036 1.71036 1.36524 1.23590 1.27699 0.83185 0.73675 0.74398 0.75025 1.18191 1.21385 1.23106 1.22582 0.96224 0.98770 0.86957 1.22791 0.91554 0.90138 0.90576 0.87343 1.86495 1.53831 1.38520 1.58275 1.73403 1.02987 1.20407 1.13687 0.95430 0.90207 0.89420 0.91417 0.89761 0.95676 0.94665 0.90618 0.87241 0.84286 0.75305 0.82076 0.74505 0.95053 0.93854 0.94086 0.92952 0.94841 0.74671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.32 127.69 1.19 1.25 16 2 N -0.55 -5.06 5.02 -948.85 -4.76 -9.82 16 3 C 0.02 0.21 9.57 127.69 1.22 1.43 16 4 C 0.05 0.50 5.06 86.30 0.44 0.94 16 5 C 0.12 0.95 6.32 86.38 0.55 1.49 16 6 N -0.27 -4.12 3.41 -347.95 -1.19 -5.30 16 7 C 0.01 0.09 11.40 83.54 0.95 1.04 16 8 C -0.20 -4.44 10.81 22.41 0.24 -4.20 16 9 C -0.04 -1.14 7.13 42.46 0.30 -0.84 16 10 C 0.60 20.77 7.82 86.74 0.68 21.45 16 11 O -0.57 -24.36 16.67 -3.95 -0.07 -24.43 16 12 N -0.69 -21.80 5.23 -438.94 -2.29 -24.09 16 13 C 0.15 5.61 3.04 46.38 0.14 5.75 16 14 H 0.08 3.47 7.73 -2.38 -0.02 3.46 16 15 C 0.13 5.79 6.93 86.85 0.60 6.39 16 16 N -0.62 -32.07 3.28 -691.98 -2.27 -34.34 16 17 C -0.33 -19.91 10.43 84.03 0.88 -19.04 16 18 H 0.04 2.95 8.06 -2.91 -0.02 2.92 16 19 C -0.07 -4.38 5.43 84.86 0.46 -3.92 16 20 N -0.95 -61.64 13.70 21.65 0.30 -61.34 16 21 Si 1.11 55.33 24.69 68.60 1.69 57.03 16 22 H -0.26 -11.13 6.80 99.48 0.68 -10.45 16 23 H -0.29 -14.00 6.75 99.48 0.67 -13.33 16 24 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 25 C 0.08 3.39 4.78 86.73 0.41 3.80 16 26 C 0.11 3.56 3.94 31.79 0.13 3.68 16 27 H 0.11 2.76 8.00 -2.39 -0.02 2.74 16 28 O -0.56 -16.22 13.40 -148.98 -2.00 -18.21 16 29 N -0.27 -6.02 11.36 -48.19 -0.55 -6.57 16 30 H 0.03 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.08 0.31 8.12 -2.39 -0.02 0.29 16 32 H 0.09 0.10 6.47 -2.39 -0.02 0.09 16 33 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 34 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 35 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.04 0.44 8.12 -2.38 -0.02 0.42 16 37 H 0.08 1.12 8.00 -2.39 -0.02 1.10 16 38 H 0.11 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.14 0.09 6.45 -2.39 -0.02 0.08 16 40 H 0.23 0.58 8.06 -2.91 -0.02 0.56 16 41 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 42 H 0.42 10.79 8.24 -92.71 -0.76 10.03 16 43 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 45 H 0.25 16.37 8.73 -92.71 -0.81 15.56 16 46 H 0.05 2.17 7.97 -2.39 -0.02 2.16 16 47 H 0.03 1.51 3.51 -2.39 -0.01 1.51 16 48 H 0.40 7.34 9.12 -74.06 -0.68 6.67 16 Total: -1.00 -85.94 391.00 -3.50 -89.44 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.55 Total: 18.41 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 8.19 Total: 19.23 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -10.76 Total: -141.47 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -2.06 Total: -42.64 kcal Atomic # 14 Polarization: 55.33 SS G_CDS: 1.69 Total: 57.03 kcal Total: -85.94 -3.50 -89.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077014358.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.339 kcal (2) G-P(sol) polarization free energy of solvation -85.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds