Wall clock time and date at job start Tue Mar 31 2020 21:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99773 * 2 1 4 4 C 1.46892 * 110.99784 * 123.95822 * 2 1 3 5 5 C 1.53004 * 109.47165 * 170.00350 * 4 2 1 6 6 N 1.46500 * 109.47120 * 179.97438 * 5 4 2 7 7 C 1.35033 * 124.88195 * 124.99550 * 6 5 4 8 8 C 1.35365 * 107.22837 * 179.97438 * 7 6 5 9 9 C 1.41502 * 105.50369 * 0.02562 * 8 7 6 10 10 C 1.47711 * 126.52311 * 180.02562 * 9 8 7 11 11 O 1.21577 * 119.99587 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00301 * 179.97438 * 10 9 8 13 13 C 1.46492 * 119.99945 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.64445 * 34.29265 * 13 12 10 15 15 C 1.54328 * 110.71948 * 271.15559 * 13 12 10 16 16 N 1.47022 * 107.27077 * 219.44627 * 15 13 12 17 17 C 1.36939 * 125.64768 * 178.90180 * 16 15 13 18 18 H 1.07996 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99927 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99974 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00144 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46819 * 59.99949 * 21 19 17 23 23 H 1.48501 * 109.47289 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46958 * 300.00470 * 21 19 17 25 25 C 1.47426 * 108.70244 * 358.93640 * 16 15 13 26 26 C 1.55117 * 104.94290 * 24.00805 * 25 16 15 27 27 H 1.08999 * 111.16130 * 205.13286 * 26 25 16 28 28 O 1.42897 * 110.93731 * 81.21300 * 26 25 16 29 29 N 1.28469 * 124.88569 * 304.95386 * 6 5 4 30 30 H 1.08994 * 109.46901 * 296.04773 * 1 2 3 31 31 H 1.09000 * 109.46854 * 56.04508 * 1 2 3 32 32 H 1.08996 * 109.47452 * 176.04158 * 1 2 3 33 33 H 1.09003 * 109.46866 * 183.95665 * 3 2 1 34 34 H 1.08998 * 109.47160 * 303.95173 * 3 2 1 35 35 H 1.08995 * 109.47149 * 63.95836 * 3 2 1 36 36 H 1.08997 * 109.47518 * 49.99559 * 4 2 1 37 37 H 1.09009 * 109.47182 * 289.99318 * 4 2 1 38 38 H 1.08997 * 109.47549 * 59.99227 * 5 4 2 39 39 H 1.09003 * 109.46421 * 299.99162 * 5 4 2 40 40 H 1.08002 * 126.39141 * 359.94288 * 7 6 5 41 41 H 1.08005 * 127.25194 * 179.73714 * 8 7 6 42 42 H 0.96994 * 119.99586 * 359.97438 * 12 10 9 43 43 H 1.08999 * 109.87808 * 338.86145 * 15 13 12 44 44 H 1.08996 * 109.88694 * 99.87353 * 15 13 12 45 45 H 0.97006 * 119.99887 * 179.97438 * 20 19 17 46 46 H 1.09007 * 110.36484 * 142.96800 * 25 16 15 47 47 H 1.08996 * 110.36646 * 265.28612 * 25 16 15 48 48 H 0.96700 * 114.00091 * 67.96016 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9703 6 7 4.0295 -1.7188 2.1051 7 6 4.7433 -2.8606 2.0036 8 6 5.0441 -3.2585 3.2620 9 6 4.4670 -2.2872 4.1140 10 6 4.5169 -2.2717 5.5901 11 8 5.0979 -3.1567 6.1880 12 7 3.9186 -1.2765 6.2743 13 6 3.9686 -1.2608 7.7383 14 1 4.9165 -1.6641 8.0947 15 6 2.7821 -2.0479 8.3336 16 7 2.3114 -1.3037 9.5109 17 6 1.2574 -1.6581 10.3102 18 1 0.6943 -2.5542 10.0954 19 6 0.9136 -0.8660 11.3970 20 7 1.6003 0.2259 11.6591 21 14 -0.5238 -1.3497 12.4877 22 1 -0.2650 -2.6848 13.0843 23 1 -0.6836 -0.3458 13.5702 24 1 -1.7656 -1.4029 11.6753 25 6 3.1616 -0.1124 9.6881 26 6 3.7448 0.1758 8.2799 27 1 4.6874 0.7188 8.3480 28 8 2.8036 0.8865 7.4731 29 7 3.8777 -1.3980 3.3398 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0828 1.3432 -0.0709 34 1 1.5898 1.9163 -0.8524 35 1 1.7044 1.8723 0.9233 36 1 1.5089 -1.7407 1.1755 37 1 1.7976 -0.2248 2.0628 38 1 3.9910 0.0193 0.9323 39 1 3.7023 -1.4966 0.0451 40 1 5.0219 -3.3630 1.0890 41 1 5.6026 -4.1355 3.5544 42 1 3.4554 -0.5703 5.7972 43 1 1.9812 -2.1235 7.5982 44 1 3.1093 -3.0448 8.6288 45 1 1.3597 0.7796 12.4184 46 1 2.5644 0.7320 10.0324 47 1 3.9659 -0.3218 10.3932 48 1 2.6315 1.7897 7.7728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083469421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:38 Heat of formation + Delta-G solvation = 44.661231 kcal Electronic energy + Delta-G solvation = -29399.925515 eV Core-core repulsion = 25300.389710 eV Total energy + Delta-G solvation = -4099.535805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.75106 -39.38041 -38.14366 -37.63746 -34.67538 -33.94839 -33.79647 -31.67688 -30.77954 -29.60781 -28.42658 -28.06105 -27.01746 -25.41639 -24.39444 -22.95398 -21.63738 -21.38683 -20.53669 -20.04848 -19.50506 -18.02407 -17.26951 -16.78978 -16.60285 -16.35765 -15.87149 -15.35134 -15.25619 -14.89715 -14.71521 -14.48644 -14.16638 -14.01916 -13.87313 -13.47336 -13.31054 -12.94646 -12.86896 -12.77731 -12.45654 -12.44402 -12.20140 -12.04650 -11.71670 -11.59147 -11.28151 -11.04226 -10.93747 -10.81014 -10.55922 -10.34013 -10.04631 -9.81688 -9.78777 -9.36896 -9.18208 -9.15870 -8.92692 -8.65476 -8.57039 -6.80354 -5.65436 -3.04957 1.59582 2.08042 2.18911 3.40232 3.43232 3.46399 3.48199 3.53991 3.63946 4.12097 4.29039 4.50878 4.60549 4.61835 4.70798 4.72223 4.80499 4.94960 5.04562 5.11347 5.23964 5.27457 5.39688 5.43471 5.44407 5.46118 5.46686 5.52849 5.60144 5.70168 5.78380 5.98549 6.11143 6.31417 6.34533 6.38765 6.42094 6.62892 6.63771 6.77261 7.02791 7.30875 7.60241 7.70300 7.76991 8.02544 8.18245 8.35995 8.54661 9.22291 9.83260 10.47167 11.39681 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.002638 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.274874 B =10611.844566 C =11841.104763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.015 3.985 4 C 0.039 3.961 5 C 0.126 3.874 6 N -0.285 5.285 7 C -0.020 4.020 8 C -0.179 4.179 9 C -0.009 4.009 10 C 0.598 3.402 11 O -0.539 6.539 12 N -0.694 5.694 13 C 0.142 3.858 14 H 0.102 0.898 15 C 0.131 3.869 16 N -0.596 5.596 17 C -0.215 4.215 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.928 5.928 21 Si 0.917 3.083 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.128 3.872 26 C 0.067 3.933 27 H 0.059 0.941 28 O -0.560 6.560 29 N -0.259 5.259 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.413 0.587 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.252 0.748 46 H 0.115 0.885 47 H 0.022 0.978 48 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 2.134 -26.018 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.133 4.133 4 C -0.090 4.090 5 C 0.005 3.995 6 N -0.073 5.073 7 C -0.162 4.162 8 C -0.207 4.207 9 C -0.169 4.169 10 C 0.382 3.618 11 O -0.414 6.414 12 N -0.344 5.344 13 C 0.037 3.963 14 H 0.120 0.880 15 C 0.004 3.996 16 N -0.323 5.323 17 C -0.343 4.343 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.747 3.253 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.002 3.998 26 C 0.006 3.994 27 H 0.077 0.923 28 O -0.366 6.366 29 N -0.094 5.094 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.129 0.871 40 H 0.198 0.802 41 H 0.180 0.820 42 H 0.250 0.750 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.133 0.867 47 H 0.040 0.960 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.365 1.839 -26.211 26.636 hybrid contribution -0.737 0.210 1.298 1.507 sum 3.628 2.049 -24.913 25.259 Atomic orbital electron populations 1.22397 0.86235 1.02686 1.01090 1.61944 1.08789 1.14202 1.42046 1.22527 1.00865 0.88638 1.01276 1.22362 0.93366 0.99983 0.93247 1.21941 0.95005 0.97259 0.85278 1.45465 1.38364 1.18676 1.04822 1.22851 1.01805 0.91076 1.00485 1.21794 1.05977 1.02286 0.90650 1.22057 1.04270 0.96087 0.94511 1.16961 0.78902 0.82065 0.83916 1.90788 1.44593 1.37145 1.68874 1.45702 1.54702 1.26804 1.07240 1.22188 1.00192 0.95496 0.78449 0.88010 1.21597 0.93446 0.94383 0.90143 1.44274 1.34368 1.24600 1.29012 1.19061 1.04471 1.06254 1.04528 0.90471 1.24753 0.99748 0.97554 0.98751 1.69718 1.41648 1.15907 1.30456 0.86110 0.81890 0.77372 0.79900 1.21202 1.21599 1.21218 1.22631 0.93891 0.93889 0.89352 1.23632 0.90951 0.90736 0.94031 0.92304 1.86263 1.64889 1.30391 1.55013 1.73527 1.21010 1.24955 0.89955 0.94988 0.90922 0.91095 0.91156 0.90958 0.94837 0.89868 0.92347 0.88915 0.87093 0.80167 0.82004 0.75020 0.95273 0.95271 0.93725 0.86732 0.95970 0.77463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.07 0.57 0.73 16 2 N -0.55 -3.75 5.02 -251.26 -1.26 -5.01 16 3 C 0.02 0.09 9.32 60.06 0.56 0.65 16 4 C 0.04 0.31 5.06 -3.83 -0.02 0.29 16 5 C 0.13 0.85 6.32 -4.04 -0.03 0.83 16 6 N -0.28 -2.89 3.41 -61.33 -0.21 -3.10 16 7 C -0.02 -0.18 11.40 -17.17 -0.20 -0.38 16 8 C -0.18 -2.21 10.81 -39.36 -0.43 -2.64 16 9 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16 10 C 0.60 10.78 7.82 -12.39 -0.10 10.69 16 11 O -0.54 -11.13 16.61 5.30 0.09 -11.04 16 12 N -0.69 -12.41 5.08 -53.01 -0.27 -12.67 16 13 C 0.14 2.81 3.15 -66.10 -0.21 2.61 16 14 H 0.10 2.03 7.62 -51.93 -0.40 1.63 16 15 C 0.13 3.07 7.00 -3.06 -0.02 3.05 16 16 N -0.60 -15.82 3.40 -169.94 -0.58 -16.40 16 17 C -0.21 -6.17 10.27 -15.06 -0.15 -6.32 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 20 N -0.93 -26.88 10.09 55.49 0.56 -26.32 16 21 Si 0.92 22.44 29.55 -169.99 -5.02 17.41 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.13 3.08 5.62 -2.42 -0.01 3.06 16 26 C 0.07 1.28 4.31 -24.47 -0.11 1.18 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 O -0.56 -10.11 12.23 -35.23 -0.43 -10.54 16 29 N -0.26 -3.51 11.36 33.42 0.38 -3.13 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 32 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 33 H 0.07 0.34 6.47 -51.93 -0.34 0.01 16 34 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 37 H 0.06 0.58 8.06 -51.92 -0.42 0.16 16 38 H 0.09 0.57 6.55 -51.93 -0.34 0.23 16 39 H 0.11 0.49 8.04 -51.93 -0.42 0.07 16 40 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.41 7.12 7.30 -40.82 -0.30 6.82 16 43 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.12 3.02 5.87 -51.93 -0.31 2.71 16 47 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.38 5.48 9.12 45.56 0.42 5.89 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -34.76 393.80 -8.33 -43.09 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.70 Total: 9.24 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -0.82 Total: 12.53 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.38 Total: -66.63 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.34 Total: -21.58 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.76 -8.33 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083469421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.751 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds