Wall clock time and date at job start Tue Mar 31 2020 21:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46900 * 110.99773 * 2 1 4 4 C 1.46892 * 110.99784 * 123.95822 * 2 1 3 5 5 C 1.53004 * 109.47165 * 170.00350 * 4 2 1 6 6 N 1.46500 * 109.47120 * 179.97438 * 5 4 2 7 7 C 1.35033 * 124.88195 * 124.99550 * 6 5 4 8 8 C 1.35365 * 107.22837 * 179.97438 * 7 6 5 9 9 C 1.41502 * 105.50369 * 0.02562 * 8 7 6 10 10 C 1.47711 * 126.52311 * 180.02562 * 9 8 7 11 11 O 1.21577 * 119.99587 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00301 * 179.97438 * 10 9 8 13 13 C 1.46492 * 119.99945 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.64445 * 34.29265 * 13 12 10 15 15 C 1.54328 * 110.71948 * 271.15559 * 13 12 10 16 16 N 1.47022 * 107.27077 * 219.44627 * 15 13 12 17 17 C 1.36939 * 125.64768 * 178.90180 * 16 15 13 18 18 H 1.07996 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99927 * 179.97438 * 17 16 15 20 20 N 1.31626 * 119.99974 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00144 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46819 * 59.99949 * 21 19 17 23 23 H 1.48501 * 109.47289 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46958 * 300.00470 * 21 19 17 25 25 C 1.47426 * 108.70244 * 358.93640 * 16 15 13 26 26 C 1.55117 * 104.94290 * 24.00805 * 25 16 15 27 27 H 1.08999 * 111.16130 * 205.13286 * 26 25 16 28 28 O 1.42897 * 110.93731 * 81.21300 * 26 25 16 29 29 N 1.28469 * 124.88569 * 304.95386 * 6 5 4 30 30 H 1.08994 * 109.46901 * 296.04773 * 1 2 3 31 31 H 1.09000 * 109.46854 * 56.04508 * 1 2 3 32 32 H 1.08996 * 109.47452 * 176.04158 * 1 2 3 33 33 H 1.09003 * 109.46866 * 183.95665 * 3 2 1 34 34 H 1.08998 * 109.47160 * 303.95173 * 3 2 1 35 35 H 1.08995 * 109.47149 * 63.95836 * 3 2 1 36 36 H 1.08997 * 109.47518 * 49.99559 * 4 2 1 37 37 H 1.09009 * 109.47182 * 289.99318 * 4 2 1 38 38 H 1.08997 * 109.47549 * 59.99227 * 5 4 2 39 39 H 1.09003 * 109.46421 * 299.99162 * 5 4 2 40 40 H 1.08002 * 126.39141 * 359.94288 * 7 6 5 41 41 H 1.08005 * 127.25194 * 179.73714 * 8 7 6 42 42 H 0.96994 * 119.99586 * 359.97438 * 12 10 9 43 43 H 1.08999 * 109.87808 * 338.86145 * 15 13 12 44 44 H 1.08996 * 109.88694 * 99.87353 * 15 13 12 45 45 H 0.97006 * 119.99887 * 179.97438 * 20 19 17 46 46 H 1.09007 * 110.36484 * 142.96800 * 25 16 15 47 47 H 1.08996 * 110.36646 * 265.28612 * 25 16 15 48 48 H 0.96700 * 114.00091 * 67.96016 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9703 6 7 4.0295 -1.7188 2.1051 7 6 4.7433 -2.8606 2.0036 8 6 5.0441 -3.2585 3.2620 9 6 4.4670 -2.2872 4.1140 10 6 4.5169 -2.2717 5.5901 11 8 5.0979 -3.1567 6.1880 12 7 3.9186 -1.2765 6.2743 13 6 3.9686 -1.2608 7.7383 14 1 4.9165 -1.6641 8.0947 15 6 2.7821 -2.0479 8.3336 16 7 2.3114 -1.3037 9.5109 17 6 1.2574 -1.6581 10.3102 18 1 0.6943 -2.5542 10.0954 19 6 0.9136 -0.8660 11.3970 20 7 1.6003 0.2259 11.6591 21 14 -0.5238 -1.3497 12.4877 22 1 -0.2650 -2.6848 13.0843 23 1 -0.6836 -0.3458 13.5702 24 1 -1.7656 -1.4029 11.6753 25 6 3.1616 -0.1124 9.6881 26 6 3.7448 0.1758 8.2799 27 1 4.6874 0.7188 8.3480 28 8 2.8036 0.8865 7.4731 29 7 3.8777 -1.3980 3.3398 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 3.0828 1.3432 -0.0709 34 1 1.5898 1.9163 -0.8524 35 1 1.7044 1.8723 0.9233 36 1 1.5089 -1.7407 1.1755 37 1 1.7976 -0.2248 2.0628 38 1 3.9910 0.0193 0.9323 39 1 3.7023 -1.4966 0.0451 40 1 5.0219 -3.3630 1.0890 41 1 5.6026 -4.1355 3.5544 42 1 3.4554 -0.5703 5.7972 43 1 1.9812 -2.1235 7.5982 44 1 3.1093 -3.0448 8.6288 45 1 1.3597 0.7796 12.4184 46 1 2.5644 0.7320 10.0324 47 1 3.9659 -0.3218 10.3932 48 1 2.6315 1.7897 7.7728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083469421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:37 Heat of formation + Delta-G solvation = 15.842817 kcal Electronic energy + Delta-G solvation = -29401.175175 eV Core-core repulsion = 25300.389710 eV Total energy + Delta-G solvation = -4100.785465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.64271 -40.89832 -39.32046 -38.65035 -36.40684 -35.50379 -34.65020 -33.58863 -31.73019 -30.66487 -30.02864 -28.75030 -28.53232 -26.73797 -25.85244 -24.00173 -22.46707 -22.40725 -22.08015 -21.55776 -20.86024 -19.31894 -18.77001 -18.27575 -17.76325 -17.23928 -16.94025 -16.69458 -16.46807 -16.17205 -15.94458 -15.68953 -15.54917 -15.17387 -14.88645 -14.73518 -14.60780 -14.33706 -14.23265 -13.93366 -13.56138 -13.38983 -13.23290 -12.96645 -12.95851 -12.73565 -12.69416 -12.55331 -12.28631 -12.21297 -12.16415 -11.93201 -11.88315 -11.82711 -11.29724 -10.90310 -10.73342 -10.34292 -10.13208 -9.97132 -9.49452 -8.92129 -7.81650 -5.25351 0.50781 1.21114 1.44421 1.45318 1.48577 1.54882 2.07827 2.35134 2.48452 2.92941 3.18365 3.28917 3.37266 3.62425 3.73298 3.80528 3.84304 3.92726 4.00248 4.17670 4.22191 4.27243 4.30401 4.44855 4.45863 4.56522 4.64763 4.69804 4.73158 4.76198 4.79013 4.82805 4.83933 4.94399 4.98688 5.03293 5.30236 5.35103 5.42971 5.45743 5.69464 5.79766 5.88332 5.97482 6.23839 6.45766 6.85855 6.93662 7.07156 7.15885 7.71090 8.34650 9.20373 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.002638 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.274874 B =10611.844566 C =11841.104763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.013 3.987 4 C 0.044 3.956 5 C 0.123 3.877 6 N -0.276 5.276 7 C 0.009 3.991 8 C -0.201 4.201 9 C -0.043 4.043 10 C 0.596 3.404 11 O -0.573 6.573 12 N -0.687 5.687 13 C 0.152 3.848 14 H 0.102 0.898 15 C 0.133 3.867 16 N -0.615 5.615 17 C -0.244 4.244 18 H 0.073 0.927 19 C -0.060 4.060 20 N -0.945 5.945 21 Si 0.983 3.017 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.279 1.279 25 C 0.129 3.871 26 C 0.089 3.911 27 H 0.096 0.904 28 O -0.564 6.564 29 N -0.275 5.275 30 H 0.019 0.981 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.031 0.969 38 H 0.104 0.896 39 H 0.147 0.853 40 H 0.232 0.768 41 H 0.165 0.835 42 H 0.417 0.583 43 H 0.017 0.983 44 H 0.014 0.986 45 H 0.250 0.750 46 H 0.092 0.908 47 H 0.004 0.996 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 2.514 -28.940 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.267 5.267 3 C -0.135 4.135 4 C -0.085 4.085 5 C 0.004 3.996 6 N -0.065 5.065 7 C -0.134 4.134 8 C -0.229 4.229 9 C -0.201 4.201 10 C 0.383 3.617 11 O -0.451 6.451 12 N -0.338 5.338 13 C 0.046 3.954 14 H 0.120 0.880 15 C 0.006 3.994 16 N -0.341 5.341 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.810 3.190 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.205 1.205 25 C 0.003 3.997 26 C 0.029 3.971 27 H 0.114 0.886 28 O -0.373 6.373 29 N -0.112 5.112 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.122 0.878 39 H 0.165 0.835 40 H 0.249 0.751 41 H 0.183 0.817 42 H 0.255 0.745 43 H 0.035 0.965 44 H 0.032 0.968 45 H 0.060 0.940 46 H 0.110 0.890 47 H 0.022 0.978 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.619 2.252 -29.162 29.612 hybrid contribution -0.863 0.110 2.088 2.262 sum 3.756 2.362 -27.074 27.435 Atomic orbital electron populations 1.22455 0.86134 1.02995 1.01069 1.62010 1.08956 1.14681 1.41062 1.22604 1.01731 0.88041 1.01123 1.22258 0.94335 0.99426 0.92490 1.22269 0.93968 0.98198 0.85142 1.45846 1.37302 1.18923 1.04395 1.23517 0.99116 0.89727 1.01034 1.22015 1.06880 1.02412 0.91596 1.21748 1.06988 0.98310 0.93089 1.17400 0.77835 0.81136 0.85374 1.90753 1.46038 1.38251 1.70049 1.45577 1.54905 1.27162 1.06184 1.21917 0.98398 0.95404 0.79709 0.88044 1.21610 0.94405 0.94180 0.89184 1.44535 1.34320 1.25807 1.29487 1.19358 1.05594 1.06649 1.05689 0.90956 1.25574 1.02239 0.97587 0.99856 1.69939 1.42597 1.16370 1.30524 0.85100 0.78829 0.77074 0.77972 1.20708 1.21260 1.20475 1.22532 0.92764 0.92213 0.92146 1.23358 0.92108 0.90888 0.90759 0.88637 1.86235 1.64810 1.31716 1.54502 1.73467 1.21271 1.25082 0.91393 0.96211 0.89551 0.90886 0.89879 0.89792 0.96147 0.90473 0.95092 0.87836 0.83493 0.75148 0.81732 0.74519 0.96493 0.96765 0.93983 0.88983 0.97828 0.75451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 127.69 1.22 1.47 16 2 N -0.54 -6.37 5.02 -948.85 -4.76 -11.13 16 3 C 0.01 0.12 9.32 127.69 1.19 1.32 16 4 C 0.04 0.61 5.06 86.31 0.44 1.05 16 5 C 0.12 1.26 6.32 86.38 0.55 1.81 16 6 N -0.28 -4.84 3.41 -347.94 -1.19 -6.03 16 7 C 0.01 0.13 11.40 83.54 0.95 1.08 16 8 C -0.20 -4.68 10.81 22.41 0.24 -4.44 16 9 C -0.04 -1.29 7.13 42.46 0.30 -0.98 16 10 C 0.60 21.95 7.82 86.75 0.68 22.62 16 11 O -0.57 -24.41 16.61 -3.96 -0.07 -24.48 16 12 N -0.69 -24.87 5.08 -439.91 -2.23 -27.10 16 13 C 0.15 6.11 3.15 46.18 0.15 6.26 16 14 H 0.10 4.12 7.62 -2.39 -0.02 4.10 16 15 C 0.13 6.46 7.00 86.73 0.61 7.06 16 16 N -0.62 -33.69 3.40 -691.57 -2.35 -36.04 16 17 C -0.24 -14.41 10.27 84.03 0.86 -13.55 16 18 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 19 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 20 N -0.94 -55.63 10.09 21.65 0.22 -55.42 16 21 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 C 0.13 6.33 5.62 86.93 0.49 6.82 16 26 C 0.09 3.38 4.31 32.06 0.14 3.52 16 27 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 28 O -0.56 -19.91 12.23 -148.98 -1.82 -21.74 16 29 N -0.27 -7.17 11.36 -48.17 -0.55 -7.71 16 30 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.74 8.12 -2.39 -0.02 0.72 16 32 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 33 H 0.08 0.58 6.47 -2.39 -0.02 0.57 16 34 H 0.08 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 37 H 0.03 0.60 8.06 -2.38 -0.02 0.58 16 38 H 0.10 0.91 6.55 -2.39 -0.02 0.90 16 39 H 0.15 0.53 8.04 -2.39 -0.02 0.51 16 40 H 0.23 0.94 8.06 -2.91 -0.02 0.91 16 41 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.42 14.40 7.30 -92.71 -0.68 13.72 16 43 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 44 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.25 14.24 8.31 -92.70 -0.77 13.47 16 46 H 0.09 4.96 5.87 -2.38 -0.01 4.95 16 47 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 48 H 0.40 10.96 9.12 -74.06 -0.68 10.28 16 Total: -1.00 -78.15 393.80 -2.81 -80.96 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.37 Total: 29.06 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 8.28 Total: 31.05 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -10.86 Total: -143.43 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -1.89 Total: -46.21 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -78.15 -2.81 -80.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083469421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.802 kcal (2) G-P(sol) polarization free energy of solvation -78.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds