Wall clock time and date at job start Tue Mar 31 2020 21:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37354 * 125.83125 * 2 1 4 4 N 1.29402 * 108.83296 * 180.02562 * 3 2 1 5 5 N 1.40179 * 108.13603 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.34669 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47006 * 270.02008 * 6 5 4 8 8 O 1.21280 * 120.00042 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99657 * 180.02562 * 7 6 5 10 10 C 1.47136 * 120.18772 * 0.02562 * 9 7 6 11 11 C 1.53612 * 107.51614 * 252.10816 * 10 9 7 12 12 C 1.53491 * 108.46570 * 290.23979 * 11 10 9 13 13 C 1.52456 * 109.13010 * 114.21513 * 12 11 10 14 14 C 1.53112 * 109.69044 * 316.07012 * 13 12 11 15 15 C 1.53436 * 109.31855 * 282.96893 * 14 13 12 16 16 H 1.08996 * 109.79554 * 312.54485 * 15 14 13 17 17 N 1.46499 * 109.63221 * 192.04471 * 15 14 13 18 18 C 1.36939 * 119.99933 * 156.26735 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31624 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00044 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47144 * 90.00258 * 22 20 18 24 24 H 1.48500 * 109.47140 * 210.00775 * 22 20 18 25 25 H 1.48502 * 109.46967 * 330.00206 * 22 20 18 26 26 C 1.46058 * 120.18494 * 180.02562 * 9 7 6 27 27 C 1.34818 * 125.83546 * 180.33414 * 2 1 3 28 28 O 1.21813 * 126.29816 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47060 * 359.97387 * 1 2 3 30 30 H 1.09001 * 109.47035 * 119.97118 * 1 2 3 31 31 H 1.09001 * 109.47289 * 239.97552 * 1 2 3 32 32 H 1.08009 * 125.58922 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.46638 * 150.02349 * 6 5 4 34 34 H 1.08997 * 109.47501 * 30.02884 * 6 5 4 35 35 H 1.08995 * 109.84669 * 11.61822 * 10 9 7 36 36 H 1.09001 * 109.84216 * 132.54056 * 10 9 7 37 37 H 1.09001 * 109.63560 * 49.93976 * 11 10 9 38 38 H 1.09006 * 109.63837 * 170.34039 * 11 10 9 39 39 H 1.08990 * 109.52669 * 234.11658 * 12 11 10 40 40 H 1.09002 * 109.52220 * 354.25626 * 12 11 10 41 41 H 1.08997 * 109.43569 * 76.13692 * 13 12 11 42 42 H 1.09006 * 109.43333 * 196.04407 * 13 12 11 43 43 H 1.08996 * 109.49657 * 163.02049 * 14 13 12 44 44 H 1.09000 * 109.49566 * 42.92259 * 14 13 12 45 45 H 0.97001 * 119.99790 * 335.98708 * 17 15 14 46 46 H 0.96998 * 119.99409 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.36406 * 306.76259 * 26 9 7 48 48 H 1.08999 * 109.36614 * 187.15277 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7353 -0.0005 5 7 3.5344 -0.6662 -0.0015 6 6 4.7314 -1.5109 -0.0029 7 6 5.1411 -1.7991 -1.4242 8 8 4.4970 -1.3434 -2.3453 9 7 6.2234 -2.5633 -1.6717 10 6 7.0075 -3.1187 -0.5574 11 6 8.3367 -2.3510 -0.4996 12 6 9.1760 -2.7392 -1.7246 13 6 9.3411 -1.5194 -2.6241 14 6 8.0011 -0.7906 -2.7561 15 6 7.1001 -1.5576 -3.7329 16 1 7.6609 -1.8079 -4.6334 17 7 5.9430 -0.7320 -4.0871 18 6 5.2743 -0.9577 -5.2606 19 1 5.6027 -1.7415 -5.9271 20 6 4.1743 -0.1792 -5.5935 21 7 3.7743 0.7763 -4.7814 22 14 3.2627 -0.4866 -7.1947 23 1 2.1801 -1.4769 -6.9656 24 1 2.6739 0.7868 -7.6814 25 1 4.2094 -1.0141 -8.2099 26 6 6.6245 -2.8448 -3.0476 27 6 2.2543 -1.0929 -0.0064 28 8 1.8806 -2.2523 -0.0127 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8903 31 1 -0.3634 -0.5142 0.8898 32 1 1.9249 2.1374 0.0004 33 1 4.5153 -2.4480 0.5101 34 1 5.5416 -0.9938 0.5111 35 1 6.4639 -2.9888 0.3784 36 1 7.1978 -4.1779 -0.7307 37 1 8.1414 -1.2787 -0.5141 38 1 8.8719 -2.6133 0.4131 39 1 10.1562 -3.0873 -1.3991 40 1 8.6715 -3.5334 -2.2749 41 1 10.0792 -0.8454 -2.1894 42 1 9.6782 -1.8390 -3.6103 43 1 8.1710 0.2178 -3.1333 44 1 7.5180 -0.7380 -1.7804 45 1 5.6480 -0.0281 -3.4884 46 1 3.0059 1.3205 -5.0142 47 1 5.7751 -3.2526 -3.5955 48 1 7.4348 -3.5739 -3.0459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088339076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:57 Heat of formation + Delta-G solvation = 73.811611 kcal Electronic energy + Delta-G solvation = -32113.986334 eV Core-core repulsion = 28015.714584 eV Total energy + Delta-G solvation = -4098.271750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.07296 -39.99298 -37.24983 -36.88491 -34.98704 -34.58102 -33.52289 -31.87835 -31.45277 -29.33368 -28.45862 -27.16413 -26.48101 -25.87142 -23.60699 -22.74154 -22.42808 -21.21223 -20.37114 -19.85818 -18.13480 -17.34105 -16.99596 -16.72899 -16.07451 -15.88101 -15.72548 -15.21080 -15.10684 -14.97768 -14.29076 -14.14110 -13.97300 -13.58183 -13.43590 -13.16085 -12.98592 -12.73405 -12.70106 -12.58728 -12.15780 -11.81370 -11.65065 -11.60655 -11.60157 -11.42123 -10.82231 -10.80186 -10.66673 -10.56516 -10.23861 -10.09924 -10.07222 -9.95172 -9.92061 -9.59652 -9.28818 -8.95167 -8.63284 -8.15468 -7.95433 -6.47783 -5.42213 -2.66268 1.96808 2.31526 3.01758 3.33288 3.39671 3.57676 3.62321 3.63122 3.66043 4.60851 4.77260 4.85085 4.91921 4.96259 4.97220 5.10070 5.20612 5.25730 5.28440 5.40077 5.48099 5.51358 5.54902 5.62149 5.64908 5.81578 5.82283 5.90436 5.92526 6.07607 6.11674 6.25451 6.26626 6.34572 6.37299 6.41566 6.48752 6.73753 6.79315 6.83750 6.95883 7.02875 7.32977 7.92027 7.92335 8.02354 8.35653 8.72653 9.04316 9.86408 10.50339 10.84222 11.79299 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.006379 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.857599 B = 4388.208817 C = 7001.940301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.561 5.561 3 C 0.253 3.747 4 N -0.263 5.263 5 N -0.431 5.431 6 C 0.145 3.855 7 C 0.462 3.538 8 O -0.425 6.425 9 N -0.610 5.610 10 C 0.107 3.893 11 C -0.148 4.148 12 C -0.127 4.127 13 C -0.114 4.114 14 C -0.132 4.132 15 C 0.165 3.835 16 H 0.050 0.950 17 N -0.699 5.699 18 C -0.224 4.224 19 H 0.060 0.940 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.892 3.108 23 H -0.296 1.296 24 H -0.296 1.296 25 H -0.286 1.286 26 C 0.094 3.906 27 C 0.655 3.345 28 O -0.561 6.561 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.227 0.773 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.388 0.612 46 H 0.244 0.756 47 H 0.064 0.936 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.143 -2.453 16.168 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.290 5.290 3 C -0.046 4.046 4 N -0.083 5.083 5 N -0.250 5.250 6 C 0.019 3.981 7 C 0.244 3.756 8 O -0.291 6.291 9 N -0.348 5.348 10 C -0.017 4.017 11 C -0.186 4.186 12 C -0.164 4.164 13 C -0.152 4.152 14 C -0.170 4.170 15 C 0.053 3.947 16 H 0.067 0.933 17 N -0.341 5.341 18 C -0.356 4.356 19 H 0.078 0.922 20 C -0.204 4.204 21 N -0.564 5.564 22 Si 0.725 3.275 23 H -0.224 1.224 24 H -0.222 1.222 25 H -0.212 1.212 26 C -0.031 4.031 27 C 0.355 3.645 28 O -0.436 6.436 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.243 0.757 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.224 0.776 46 H 0.054 0.946 47 H 0.082 0.918 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.422 -2.769 15.447 16.304 hybrid contribution -1.415 -0.242 -0.821 1.654 sum 3.006 -3.011 14.625 15.232 Atomic orbital electron populations 1.21722 0.74652 1.03841 1.03533 1.45763 1.08597 1.06744 1.67849 1.25806 0.85862 0.94477 0.98445 1.76964 1.18078 0.91339 1.21927 1.48146 1.05275 1.03164 1.68446 1.21263 0.85281 0.94166 0.97367 1.20790 0.82474 0.81116 0.91235 1.91175 1.49489 1.45082 1.43353 1.47879 1.28063 1.52255 1.06597 1.21927 0.92257 0.97630 0.89905 1.22493 0.95998 1.02022 0.98059 1.21875 0.99167 0.98951 0.96415 1.21463 0.97650 0.96726 0.99354 1.22175 0.94784 0.99021 1.01041 1.20783 0.89599 0.90330 0.93999 0.93261 1.42396 1.30596 1.38368 1.22713 1.19038 1.07734 1.12958 0.95822 0.92216 1.24573 0.98865 0.99188 0.97724 1.69718 1.27516 1.22893 1.36257 0.86414 0.80213 0.76611 0.84281 1.22393 1.22231 1.21187 1.22683 0.99259 0.99885 0.81284 1.16573 0.81968 0.84943 0.81062 1.91037 1.77863 1.15468 1.59188 0.89086 0.90627 0.90890 0.75662 0.87146 0.87009 0.90801 0.91079 0.90063 0.91776 0.92802 0.90848 0.92868 0.92225 0.92478 0.90966 0.77600 0.94558 0.91771 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 11.08 59.85 0.66 1.76 16 2 N -0.56 -8.47 3.14 -130.10 -0.41 -8.87 16 3 C 0.25 3.46 12.61 -89.12 -1.12 2.34 16 4 N -0.26 -4.50 12.53 29.87 0.37 -4.12 16 5 N -0.43 -7.87 3.11 -66.31 -0.21 -8.07 16 6 C 0.14 2.29 5.22 -5.19 -0.03 2.26 16 7 C 0.46 9.02 6.92 -10.98 -0.08 8.95 16 8 O -0.43 -10.98 12.61 5.56 0.07 -10.91 16 9 N -0.61 -9.85 1.72 -172.92 -0.30 -10.15 16 10 C 0.11 1.18 5.83 -3.38 -0.02 1.16 16 11 C -0.15 -1.50 5.59 -26.16 -0.15 -1.65 16 12 C -0.13 -1.38 5.48 -26.75 -0.15 -1.52 16 13 C -0.11 -1.47 5.67 -26.95 -0.15 -1.63 16 14 C -0.13 -2.24 4.92 -26.45 -0.13 -2.37 16 15 C 0.16 3.36 2.68 -67.51 -0.18 3.18 16 16 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 17 N -0.70 -18.44 3.04 -53.02 -0.16 -18.60 16 18 C -0.22 -6.60 9.77 -15.06 -0.15 -6.75 16 19 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -29.29 13.06 55.49 0.72 -28.57 16 22 Si 0.89 24.11 29.55 -169.99 -5.02 19.08 16 23 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 24 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 C 0.09 1.71 4.92 -4.08 -0.02 1.69 16 27 C 0.65 12.67 8.60 -86.74 -0.75 11.93 16 28 O -0.56 -12.44 17.77 5.09 0.09 -12.35 16 29 H 0.09 0.58 8.07 -51.93 -0.42 0.17 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.23 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.11 1.51 7.56 -51.93 -0.39 1.12 16 34 H 0.11 1.41 8.02 -51.93 -0.42 1.00 16 35 H 0.07 0.67 5.98 -51.93 -0.31 0.36 16 36 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 37 H 0.08 0.96 5.45 -51.93 -0.28 0.68 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.84 4.49 -51.93 -0.23 0.60 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 1.22 3.68 -51.93 -0.19 1.03 16 45 H 0.39 11.29 6.35 -40.82 -0.26 11.03 16 46 H 0.24 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.06 1.43 8.05 -51.93 -0.42 1.01 16 48 H 0.07 0.99 5.07 -51.93 -0.26 0.73 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -41.07 372.07 -8.50 -49.57 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.92 Total: 8.36 kcal Atomic # 6 Polarization: 21.37 SS G_CDS: -2.35 Total: 19.02 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: 0.03 Total: -78.38 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.16 Total: -23.26 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.02 Total: 19.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -41.07 -8.50 -49.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088339076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.379 kcal (2) G-P(sol) polarization free energy of solvation -41.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds