Wall clock time and date at job start Tue Mar 31 2020 20:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39893 * 125.74349 * 2 1 4 4 C 1.30288 * 109.23052 * 180.17663 * 3 2 1 5 5 C 1.41484 * 108.19076 * 359.58548 * 4 3 2 6 6 C 1.46774 * 126.51973 * 180.26351 * 5 4 3 7 7 O 1.21687 * 120.00012 * 134.50350 * 6 5 4 8 8 N 1.34776 * 119.99989 * 314.49683 * 6 5 4 9 9 C 1.46923 * 120.62969 * 3.61135 * 8 6 5 10 10 C 1.52759 * 109.01049 * 233.58512 * 9 8 6 11 11 C 1.53045 * 109.38174 * 305.58988 * 10 9 8 12 12 N 1.46495 * 109.45738 * 181.26276 * 11 10 9 13 13 C 1.36937 * 120.00409 * 299.92864 * 12 11 10 14 14 H 1.08005 * 119.99239 * 320.80935 * 13 12 11 15 15 C 1.38804 * 120.00417 * 140.80657 * 13 12 11 16 16 N 1.31617 * 120.00365 * 339.69748 * 15 13 12 17 17 Si 1.86804 * 119.99876 * 159.69293 * 15 13 12 18 18 H 1.48500 * 109.47063 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47099 * 120.00445 * 17 15 13 20 20 H 1.48499 * 109.46953 * 240.00307 * 17 15 13 21 21 C 1.46509 * 119.99972 * 119.93505 * 12 11 10 22 22 C 1.52999 * 109.47208 * 84.39529 * 21 12 11 23 23 O 1.42897 * 109.46855 * 65.00069 * 22 21 12 24 24 C 1.53031 * 109.53602 * 61.23789 * 11 10 9 25 25 C 1.46921 * 120.63099 * 183.89115 * 8 6 5 26 26 C 1.34840 * 125.75058 * 179.71126 * 2 1 3 27 27 N 1.38023 * 126.44551 * 359.97438 * 26 2 1 28 28 H 1.09010 * 109.46819 * 270.28734 * 1 2 3 29 29 H 1.08999 * 109.47594 * 30.28809 * 1 2 3 30 30 H 1.08994 * 109.47024 * 150.29275 * 1 2 3 31 31 H 1.08000 * 125.90597 * 179.84535 * 4 3 2 32 32 H 1.09007 * 109.58883 * 353.42015 * 9 8 6 33 33 H 1.08999 * 109.58757 * 113.84310 * 9 8 6 34 34 H 1.09009 * 109.56358 * 185.55529 * 10 9 8 35 35 H 1.08997 * 109.36228 * 65.50061 * 10 9 8 36 36 H 1.09005 * 109.45865 * 301.21602 * 11 10 9 37 37 H 0.96995 * 120.00559 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.46555 * 204.39796 * 21 12 11 39 39 H 1.08997 * 109.47025 * 324.39378 * 21 12 11 40 40 H 1.09003 * 109.46705 * 184.99992 * 22 21 12 41 41 H 1.08993 * 109.47467 * 304.99931 * 22 21 12 42 42 H 0.96706 * 113.99638 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.49777 * 178.68633 * 24 11 10 44 44 H 1.09002 * 109.52524 * 58.60754 * 24 11 10 45 45 H 1.08996 * 109.58752 * 246.15950 * 25 8 6 46 46 H 1.09002 * 109.58338 * 6.44477 * 25 8 6 47 47 H 0.96995 * 119.99717 * 180.02562 * 27 26 2 48 48 H 0.96999 * 119.99437 * 0.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1354 0.0000 4 6 3.5313 0.7651 -0.0038 5 6 3.5728 -0.6491 0.0033 6 6 4.7774 -1.4876 0.0075 7 8 4.8548 -2.4377 0.7639 8 7 5.7979 -1.2054 -0.8264 9 6 5.7529 -0.0168 -1.6889 10 6 5.9976 -0.4422 -3.1355 11 6 7.3068 -1.2304 -3.2186 12 7 7.5584 -1.6134 -4.6101 13 6 6.6574 -2.3994 -5.2776 14 1 6.1681 -3.2144 -4.7650 15 6 6.3730 -2.1486 -6.6129 16 7 6.6315 -0.9662 -7.1300 17 14 5.6234 -3.4893 -7.6759 18 1 5.4312 -4.7166 -6.8623 19 1 4.3108 -3.0313 -8.1979 20 1 6.5320 -3.7857 -8.8125 21 6 8.7742 -1.1556 -5.2875 22 6 9.9293 -2.1032 -4.9578 23 8 9.6560 -3.3952 -5.5038 24 6 7.2022 -2.4889 -2.3543 25 6 6.9737 -2.0836 -0.8947 26 6 2.2528 -1.0943 0.0055 27 7 1.8308 -2.4084 0.0126 28 1 -0.3633 0.0052 1.0278 29 1 -0.3634 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 4.3872 1.4238 -0.0071 32 1 4.7739 0.4558 -1.6091 33 1 6.5267 0.6869 -1.3821 34 1 6.0643 0.4419 -3.7697 35 1 5.1728 -1.0704 -3.4719 36 1 8.1277 -0.6100 -2.8589 37 1 6.4331 -0.7911 -8.0632 38 1 8.6081 -1.1460 -6.3647 39 1 9.0217 -0.1495 -4.9491 40 1 10.8522 -1.7145 -5.3884 41 1 10.0378 -2.1814 -3.8761 42 1 10.3482 -4.0486 -5.3332 43 1 8.1264 -3.0617 -2.4323 44 1 6.3664 -3.0984 -2.6978 45 1 7.8491 -1.5520 -0.5217 46 1 6.8009 -2.9733 -0.2890 47 1 2.4823 -3.1270 0.0166 48 1 0.8827 -2.6132 0.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098350964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:10 Heat of formation + Delta-G solvation = 27.619101 kcal Electronic energy + Delta-G solvation = -30796.235728 eV Core-core repulsion = 26695.960920 eV Total energy + Delta-G solvation = -4100.274807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.38769 -39.33939 -37.34063 -36.07219 -35.04320 -34.43620 -33.24439 -31.87397 -30.66740 -30.27599 -28.64475 -27.62659 -27.06660 -24.83899 -23.42491 -22.64839 -22.00412 -20.99585 -20.43373 -19.77439 -18.83123 -17.63342 -17.04852 -16.56503 -16.33760 -16.08370 -15.81672 -15.34813 -14.83166 -14.62821 -14.47093 -14.33176 -13.74420 -13.57877 -13.44194 -13.22264 -13.03625 -12.99331 -12.78050 -12.67304 -12.35180 -12.02826 -11.73111 -11.47199 -11.22171 -11.12005 -10.90383 -10.85167 -10.67074 -10.59585 -10.42633 -9.96548 -9.82900 -9.79955 -9.51526 -9.38980 -9.06858 -8.95711 -8.32761 -8.22811 -7.78478 -6.43477 -5.67832 -3.22611 1.92034 2.16653 2.39292 3.24939 3.44212 3.52357 3.55058 3.56104 3.64968 4.35766 4.59064 4.85791 4.89680 5.12419 5.15771 5.21813 5.33130 5.34651 5.44284 5.48969 5.53443 5.65460 5.75878 5.88409 5.91513 6.06332 6.09907 6.17139 6.23113 6.28066 6.39132 6.47792 6.51640 6.58864 6.73119 6.80946 6.85565 7.00865 7.15683 7.21777 7.30870 7.31760 7.67595 7.76321 7.87076 7.95827 8.49245 8.60057 8.68932 9.30878 9.93895 10.51041 11.35078 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.003566 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.246831 B = 7850.911996 C = 8749.848788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.401 5.401 3 N -0.309 5.309 4 C 0.112 3.888 5 C -0.359 4.359 6 C 0.603 3.397 7 O -0.568 6.568 8 N -0.597 5.597 9 C 0.101 3.899 10 C -0.132 4.132 11 C 0.178 3.822 12 N -0.572 5.572 13 C -0.231 4.231 14 H 0.054 0.946 15 C 0.016 3.984 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.290 1.290 21 C 0.148 3.852 22 C 0.058 3.942 23 O -0.545 6.545 24 C -0.137 4.137 25 C 0.116 3.884 26 C 0.422 3.578 27 N -0.836 5.836 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.189 0.811 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.250 0.750 38 H 0.097 0.903 39 H 0.036 0.964 40 H 0.019 0.981 41 H 0.023 0.977 42 H 0.349 0.651 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.083 0.917 47 H 0.426 0.574 48 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 2.027 13.556 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.189 5.189 3 N -0.128 5.128 4 C -0.076 4.076 5 C -0.379 4.379 6 C 0.393 3.607 7 O -0.449 6.449 8 N -0.328 5.328 9 C -0.022 4.022 10 C -0.172 4.172 11 C 0.070 3.930 12 N -0.291 5.291 13 C -0.361 4.361 14 H 0.071 0.929 15 C -0.183 4.183 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.223 1.223 20 H -0.216 1.216 21 C 0.022 3.978 22 C -0.022 4.022 23 O -0.346 6.346 24 C -0.177 4.177 25 C -0.007 4.007 26 C 0.189 3.811 27 N -0.384 5.384 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.206 0.794 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.041 0.959 42 H 0.192 0.808 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.259 0.741 48 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -7.296 2.974 13.555 15.679 hybrid contribution 0.565 -1.950 -0.627 2.125 sum -6.731 1.023 12.928 14.611 Atomic orbital electron populations 1.21770 0.74448 1.04477 1.03120 1.48073 1.06250 1.02329 1.62237 1.77106 1.01701 1.05308 1.28658 1.23752 0.95096 0.93225 0.95576 1.19193 0.90920 0.93953 1.33795 1.17054 0.81547 0.83012 0.79120 1.90716 1.81454 1.31734 1.40953 1.47925 1.18901 1.26512 1.39496 1.22013 1.02097 0.86631 0.91465 1.22189 1.00910 1.01357 0.92743 1.20321 0.94018 0.92118 0.86540 1.43693 1.19166 1.58473 1.07736 1.18754 1.17978 1.06091 0.93237 0.92858 1.25068 0.98730 0.95302 0.99176 1.69999 1.51163 1.19341 1.13250 0.86384 0.77971 0.82449 0.80785 1.20349 1.22251 1.21645 1.20935 0.83858 0.91143 1.01904 1.23118 0.98524 0.85509 0.95063 1.86846 1.47285 1.20822 1.79636 1.22337 1.02164 1.00447 0.92791 1.21632 0.86487 0.94287 0.98265 1.17893 0.89336 0.81842 0.92024 1.41488 1.10924 1.02518 1.83449 0.90950 0.88766 0.90197 0.79404 0.89649 0.92133 0.91072 0.91228 0.93662 0.93974 0.88476 0.94561 0.96328 0.95902 0.80795 0.91719 0.91495 0.92364 0.89898 0.74088 0.77150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.25 59.85 0.67 1.41 16 2 N -0.40 -4.78 4.00 -66.81 -0.27 -5.04 16 3 N -0.31 -4.23 12.47 30.88 0.38 -3.84 16 4 C 0.11 1.50 9.58 -16.97 -0.16 1.34 16 5 C -0.36 -5.33 5.27 -104.82 -0.55 -5.88 16 6 C 0.60 10.03 7.38 -12.81 -0.09 9.94 16 7 O -0.57 -10.70 15.99 5.20 0.08 -10.61 16 8 N -0.60 -9.48 2.98 -174.54 -0.52 -9.99 16 9 C 0.10 1.51 5.73 -3.94 -0.02 1.49 16 10 C -0.13 -2.48 5.29 -26.83 -0.14 -2.63 16 11 C 0.18 3.47 2.60 -67.89 -0.18 3.29 16 12 N -0.57 -13.43 2.31 -165.61 -0.38 -13.81 16 13 C -0.23 -6.14 8.00 -15.06 -0.12 -6.26 16 14 H 0.05 1.48 6.91 -52.48 -0.36 1.12 16 15 C 0.02 0.45 4.91 -17.43 -0.09 0.37 16 16 N -0.89 -25.51 11.61 55.49 0.64 -24.86 16 17 Si 0.89 22.33 29.60 -169.99 -5.03 17.30 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 21 C 0.15 3.37 5.56 -4.04 -0.02 3.34 16 22 C 0.06 1.12 7.39 37.16 0.27 1.39 16 23 O -0.54 -11.26 13.40 -35.23 -0.47 -11.74 16 24 C -0.14 -2.50 5.30 -26.62 -0.14 -2.64 16 25 C 0.12 1.84 6.43 -3.71 -0.02 1.81 16 26 C 0.42 5.51 8.01 -153.78 -1.23 4.28 16 27 N -0.84 -8.49 9.04 31.40 0.28 -8.21 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.39 7.46 -51.93 -0.39 0.00 16 31 H 0.19 2.01 7.31 -52.49 -0.38 1.63 16 32 H 0.09 1.21 4.32 -51.92 -0.22 0.99 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 35 H 0.07 1.52 7.71 -51.93 -0.40 1.12 16 36 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 37 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.10 2.58 5.69 -51.93 -0.30 2.29 16 39 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.35 5.24 9.12 45.56 0.42 5.66 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.39 7.07 -51.93 -0.37 1.02 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.36 7.02 -51.93 -0.36 0.99 16 47 H 0.43 4.75 8.21 -40.82 -0.33 4.41 16 48 H 0.40 2.64 8.04 -40.82 -0.33 2.31 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -34.98 383.58 -7.70 -42.68 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.38 Total: 11.10 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.83 Total: 11.25 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: 0.14 Total: -65.77 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.39 Total: -22.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.98 -7.70 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098350964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.299 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds