Wall clock time and date at job start Tue Mar 31 2020 20:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39893 * 125.74349 * 2 1 4 4 C 1.30288 * 109.23052 * 180.17663 * 3 2 1 5 5 C 1.41484 * 108.19076 * 359.58548 * 4 3 2 6 6 C 1.46774 * 126.51973 * 180.26351 * 5 4 3 7 7 O 1.21687 * 120.00012 * 134.50350 * 6 5 4 8 8 N 1.34776 * 119.99989 * 314.49683 * 6 5 4 9 9 C 1.46923 * 120.62969 * 3.61135 * 8 6 5 10 10 C 1.52759 * 109.01049 * 233.58512 * 9 8 6 11 11 C 1.53045 * 109.38174 * 305.58988 * 10 9 8 12 12 N 1.46495 * 109.45738 * 181.26276 * 11 10 9 13 13 C 1.36937 * 120.00409 * 299.92864 * 12 11 10 14 14 H 1.08005 * 119.99239 * 320.80935 * 13 12 11 15 15 C 1.38804 * 120.00417 * 140.80657 * 13 12 11 16 16 N 1.31617 * 120.00365 * 339.69748 * 15 13 12 17 17 Si 1.86804 * 119.99876 * 159.69293 * 15 13 12 18 18 H 1.48500 * 109.47063 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47099 * 120.00445 * 17 15 13 20 20 H 1.48499 * 109.46953 * 240.00307 * 17 15 13 21 21 C 1.46509 * 119.99972 * 119.93505 * 12 11 10 22 22 C 1.52999 * 109.47208 * 84.39529 * 21 12 11 23 23 O 1.42897 * 109.46855 * 65.00069 * 22 21 12 24 24 C 1.53031 * 109.53602 * 61.23789 * 11 10 9 25 25 C 1.46921 * 120.63099 * 183.89115 * 8 6 5 26 26 C 1.34840 * 125.75058 * 179.71126 * 2 1 3 27 27 N 1.38023 * 126.44551 * 359.97438 * 26 2 1 28 28 H 1.09010 * 109.46819 * 270.28734 * 1 2 3 29 29 H 1.08999 * 109.47594 * 30.28809 * 1 2 3 30 30 H 1.08994 * 109.47024 * 150.29275 * 1 2 3 31 31 H 1.08000 * 125.90597 * 179.84535 * 4 3 2 32 32 H 1.09007 * 109.58883 * 353.42015 * 9 8 6 33 33 H 1.08999 * 109.58757 * 113.84310 * 9 8 6 34 34 H 1.09009 * 109.56358 * 185.55529 * 10 9 8 35 35 H 1.08997 * 109.36228 * 65.50061 * 10 9 8 36 36 H 1.09005 * 109.45865 * 301.21602 * 11 10 9 37 37 H 0.96995 * 120.00559 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.46555 * 204.39796 * 21 12 11 39 39 H 1.08997 * 109.47025 * 324.39378 * 21 12 11 40 40 H 1.09003 * 109.46705 * 184.99992 * 22 21 12 41 41 H 1.08993 * 109.47467 * 304.99931 * 22 21 12 42 42 H 0.96706 * 113.99638 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.49777 * 178.68633 * 24 11 10 44 44 H 1.09002 * 109.52524 * 58.60754 * 24 11 10 45 45 H 1.08996 * 109.58752 * 246.15950 * 25 8 6 46 46 H 1.09002 * 109.58338 * 6.44477 * 25 8 6 47 47 H 0.96995 * 119.99717 * 180.02562 * 27 26 2 48 48 H 0.96999 * 119.99437 * 0.02562 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1354 0.0000 4 6 3.5313 0.7651 -0.0038 5 6 3.5728 -0.6491 0.0033 6 6 4.7774 -1.4876 0.0075 7 8 4.8548 -2.4377 0.7639 8 7 5.7979 -1.2054 -0.8264 9 6 5.7529 -0.0168 -1.6889 10 6 5.9976 -0.4422 -3.1355 11 6 7.3068 -1.2304 -3.2186 12 7 7.5584 -1.6134 -4.6101 13 6 6.6574 -2.3994 -5.2776 14 1 6.1681 -3.2144 -4.7650 15 6 6.3730 -2.1486 -6.6129 16 7 6.6315 -0.9662 -7.1300 17 14 5.6234 -3.4893 -7.6759 18 1 5.4312 -4.7166 -6.8623 19 1 4.3108 -3.0313 -8.1979 20 1 6.5320 -3.7857 -8.8125 21 6 8.7742 -1.1556 -5.2875 22 6 9.9293 -2.1032 -4.9578 23 8 9.6560 -3.3952 -5.5038 24 6 7.2022 -2.4889 -2.3543 25 6 6.9737 -2.0836 -0.8947 26 6 2.2528 -1.0943 0.0055 27 7 1.8308 -2.4084 0.0126 28 1 -0.3633 0.0052 1.0278 29 1 -0.3634 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 4.3872 1.4238 -0.0071 32 1 4.7739 0.4558 -1.6091 33 1 6.5267 0.6869 -1.3821 34 1 6.0643 0.4419 -3.7697 35 1 5.1728 -1.0704 -3.4719 36 1 8.1277 -0.6100 -2.8589 37 1 6.4331 -0.7911 -8.0632 38 1 8.6081 -1.1460 -6.3647 39 1 9.0217 -0.1495 -4.9491 40 1 10.8522 -1.7145 -5.3884 41 1 10.0378 -2.1814 -3.8761 42 1 10.3482 -4.0486 -5.3332 43 1 8.1264 -3.0617 -2.4323 44 1 6.3664 -3.0984 -2.6978 45 1 7.8491 -1.5520 -0.5217 46 1 6.8009 -2.9733 -0.2890 47 1 2.4823 -3.1270 0.0166 48 1 0.8827 -2.6132 0.0137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098350964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:08 Heat of formation + Delta-G solvation = 0.766891 kcal Electronic energy + Delta-G solvation = -30797.400127 eV Core-core repulsion = 26695.960920 eV Total energy + Delta-G solvation = -4101.439207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.37236 -40.63139 -38.88147 -37.57397 -36.24126 -35.79643 -34.18566 -33.58746 -32.10780 -31.86974 -29.77203 -29.23594 -27.91617 -26.50403 -24.96364 -24.02747 -23.22369 -22.13141 -21.87140 -21.25410 -20.09387 -18.67271 -18.27227 -18.15129 -17.77717 -17.33395 -16.77274 -16.73573 -16.47534 -16.05615 -15.83662 -15.58109 -15.42845 -14.95365 -14.67025 -14.56201 -14.33592 -14.16330 -13.95955 -13.69321 -13.55045 -13.47410 -13.17043 -12.98479 -12.96223 -12.74077 -12.56768 -12.33237 -12.21872 -12.00225 -11.88337 -11.78050 -11.55149 -11.42684 -11.08835 -10.75400 -10.59287 -10.37495 -9.88821 -9.52017 -8.79193 -8.39207 -7.72423 -5.29736 0.93487 1.31826 1.33958 1.41499 1.46269 1.54058 2.03974 2.44906 2.56813 2.76163 3.37508 3.55326 3.61700 3.86675 3.95927 4.09331 4.12272 4.29499 4.33564 4.39540 4.45608 4.53187 4.53428 4.58406 4.60941 4.66729 4.69966 4.78489 4.88834 4.92664 4.96353 4.99377 5.14946 5.23265 5.26254 5.39393 5.53708 5.63691 5.68762 5.77722 5.78427 5.86071 6.22685 6.51461 6.59116 6.59346 6.88521 7.23353 7.32551 7.33993 8.01101 8.50918 9.24800 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013092 B = 0.003566 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.246831 B = 7850.911996 C = 8749.848788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.399 5.399 3 N -0.327 5.327 4 C 0.112 3.888 5 C -0.391 4.391 6 C 0.603 3.397 7 O -0.596 6.596 8 N -0.598 5.598 9 C 0.113 3.887 10 C -0.120 4.120 11 C 0.173 3.827 12 N -0.584 5.584 13 C -0.218 4.218 14 H 0.036 0.964 15 C -0.030 4.030 16 N -0.919 5.919 17 Si 0.938 3.062 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.295 1.295 21 C 0.143 3.857 22 C 0.067 3.933 23 O -0.578 6.578 24 C -0.122 4.122 25 C 0.123 3.877 26 C 0.418 3.582 27 N -0.824 5.824 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.210 0.790 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.245 0.755 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.375 0.625 43 H 0.066 0.934 44 H 0.031 0.969 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.422 0.578 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 2.439 15.212 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.188 5.188 3 N -0.146 5.146 4 C -0.076 4.076 5 C -0.411 4.411 6 C 0.394 3.606 7 O -0.478 6.478 8 N -0.329 5.329 9 C -0.010 4.010 10 C -0.160 4.160 11 C 0.067 3.933 12 N -0.304 5.304 13 C -0.349 4.349 14 H 0.054 0.946 15 C -0.226 4.226 16 N -0.564 5.564 17 Si 0.769 3.231 18 H -0.203 1.203 19 H -0.222 1.222 20 H -0.222 1.222 21 C 0.017 3.983 22 C -0.013 4.013 23 O -0.383 6.383 24 C -0.162 4.162 25 C 0.001 3.999 26 C 0.182 3.818 27 N -0.373 5.373 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.227 0.773 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.221 0.779 43 H 0.085 0.915 44 H 0.050 0.950 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.254 0.746 48 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -7.164 3.375 15.228 17.165 hybrid contribution 0.484 -2.122 -1.099 2.438 sum -6.680 1.253 14.130 15.679 Atomic orbital electron populations 1.22177 0.71886 1.05984 1.04782 1.48379 1.07602 1.01420 1.61396 1.77038 1.02071 1.06458 1.29067 1.24071 0.95721 0.92868 0.94989 1.19249 0.91006 0.94649 1.36187 1.17312 0.81899 0.82726 0.78703 1.90690 1.81934 1.33038 1.42181 1.47972 1.18886 1.26697 1.39379 1.21967 1.03850 0.86627 0.88513 1.22005 0.99064 0.99736 0.95244 1.20518 0.95059 0.93084 0.84641 1.43862 1.19197 1.58343 1.08989 1.18709 1.17316 1.05558 0.93292 0.94629 1.25535 1.00218 0.96624 1.00253 1.70093 1.52978 1.20403 1.12954 0.85670 0.77211 0.80818 0.79413 1.20277 1.22244 1.22177 1.20910 0.84893 0.93002 0.99537 1.22916 0.97722 0.84420 0.96231 1.86763 1.49313 1.22025 1.80167 1.22133 1.00756 0.99171 0.94153 1.21564 0.87571 0.94652 0.96155 1.18048 0.89349 0.82932 0.91423 1.41477 1.11943 1.01427 1.82442 0.89175 0.88197 0.87874 0.77349 0.88715 0.88881 0.92644 0.95148 0.91287 0.94572 0.92518 0.93263 0.93656 0.94010 0.77919 0.91533 0.94974 0.89510 0.90478 0.74560 0.75155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 11.25 127.77 1.44 2.53 16 2 N -0.40 -8.87 4.00 -365.30 -1.46 -10.33 16 3 N -0.33 -8.48 12.47 -56.23 -0.70 -9.19 16 4 C 0.11 2.82 9.58 85.72 0.82 3.65 16 5 C -0.39 -11.22 5.27 -19.99 -0.11 -11.32 16 6 C 0.60 19.51 7.38 86.47 0.64 20.15 16 7 O -0.60 -22.13 15.99 -4.31 -0.07 -22.20 16 8 N -0.60 -18.12 2.98 -824.35 -2.45 -20.58 16 9 C 0.11 3.17 5.73 86.22 0.49 3.66 16 10 C -0.12 -4.50 5.29 30.53 0.16 -4.34 16 11 C 0.17 6.60 2.60 45.02 0.12 6.72 16 12 N -0.58 -27.43 2.31 -677.88 -1.56 -28.99 16 13 C -0.22 -11.82 8.00 84.03 0.67 -11.15 16 14 H 0.04 2.05 6.91 -2.91 -0.02 2.03 16 15 C -0.03 -1.69 4.91 84.86 0.42 -1.28 16 16 N -0.92 -53.72 11.61 21.65 0.25 -53.47 16 17 Si 0.94 46.87 29.60 68.60 2.03 48.90 16 18 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 19 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 20 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 21 C 0.14 6.40 5.56 86.38 0.48 6.88 16 22 C 0.07 2.43 7.39 71.98 0.53 2.96 16 23 O -0.58 -23.13 13.40 -148.98 -2.00 -25.13 16 24 C -0.12 -4.34 5.30 30.67 0.16 -4.18 16 25 C 0.12 3.68 6.43 86.36 0.55 4.23 16 26 C 0.42 10.41 8.01 132.69 1.06 11.47 16 27 N -0.82 -15.77 9.04 -54.57 -0.49 -16.27 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 0.73 7.46 -2.39 -0.02 0.71 16 31 H 0.21 4.00 7.31 -2.91 -0.02 3.98 16 32 H 0.09 2.53 4.32 -2.38 -0.01 2.52 16 33 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.03 1.35 7.71 -2.39 -0.02 1.33 16 36 H 0.07 2.33 7.87 -2.38 -0.02 2.31 16 37 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.06 3.05 5.69 -2.39 -0.01 3.04 16 39 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.37 10.51 9.12 -74.05 -0.68 9.83 16 43 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.03 1.35 7.07 -2.39 -0.02 1.33 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.43 7.02 -2.39 -0.02 2.42 16 47 H 0.42 9.17 8.21 -92.71 -0.76 8.41 16 48 H 0.42 4.75 8.04 -92.71 -0.75 4.01 16 Total: -1.00 -77.56 383.58 -0.17 -77.73 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -1.16 Total: 29.52 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: 7.44 Total: 29.99 kcal Atomic # 7 Polarization: -132.40 SS G_CDS: -6.42 Total: -138.82 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.07 Total: -47.32 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -77.56 -0.17 -77.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098350964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.498 kcal (2) G-P(sol) polarization free energy of solvation -77.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds