Wall clock time and date at job start Tue Mar 31 2020 20:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.46915 * 2 1 4 4 C 1.42902 * 113.99764 * 180.02562 * 3 2 1 5 5 H 1.09010 * 109.46973 * 329.99266 * 4 3 2 6 6 C 1.52997 * 109.47747 * 89.99473 * 4 3 2 7 7 C 1.50701 * 109.46926 * 210.00292 * 4 3 2 8 8 O 1.21284 * 119.99866 * 353.13360 * 7 4 3 9 9 N 1.34777 * 120.00335 * 173.14074 * 7 4 3 10 10 C 1.47022 * 125.65154 * 175.19829 * 9 7 4 11 11 C 1.54321 * 107.27048 * 178.90284 * 10 9 7 12 12 C 1.55157 * 102.94351 * 337.80793 * 11 10 9 13 13 H 1.08997 * 111.00737 * 277.38955 * 12 11 10 14 14 N 1.46499 * 111.00494 * 153.57660 * 12 11 10 15 15 C 1.35312 * 125.86608 * 329.60386 * 14 12 11 16 16 C 1.35353 * 106.17406 * 179.97438 * 15 14 12 17 17 C 1.50706 * 126.75339 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.47447 * 95.03984 * 17 16 15 19 19 C 1.36934 * 120.00102 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99799 * 0.02562 * 19 18 17 21 21 C 1.38820 * 120.00120 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99696 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99740 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47150 * 89.99793 * 23 21 19 25 25 H 1.48500 * 109.46623 * 209.99639 * 23 21 19 26 26 H 1.48495 * 109.46992 * 329.99390 * 23 21 19 27 27 N 1.33771 * 106.49740 * 359.97438 * 16 15 14 28 28 N 1.28634 * 108.88693 * 0.02562 * 27 16 15 29 29 C 1.47468 * 125.62642 * 355.11684 * 9 7 4 30 30 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47282 * 300.00490 * 1 2 3 32 32 H 1.09003 * 109.46871 * 60.00126 * 1 2 3 33 33 H 1.09003 * 109.46699 * 239.99940 * 2 1 3 34 34 H 1.09003 * 109.46871 * 119.99874 * 2 1 3 35 35 H 1.08999 * 109.46864 * 64.35198 * 6 4 3 36 36 H 1.08996 * 109.47395 * 184.34866 * 6 4 3 37 37 H 1.09000 * 109.47171 * 304.34986 * 6 4 3 38 38 H 1.09005 * 109.87855 * 59.48691 * 10 9 7 39 39 H 1.08997 * 110.01410 * 298.39470 * 10 9 7 40 40 H 1.09000 * 110.71864 * 219.44928 * 11 10 9 41 41 H 1.08995 * 110.71983 * 96.17328 * 11 10 9 42 42 H 1.07998 * 126.91577 * 359.91942 * 15 14 12 43 43 H 1.08995 * 109.47075 * 215.04492 * 17 16 15 44 44 H 1.09004 * 109.46786 * 335.04484 * 17 16 15 45 45 H 0.97007 * 120.00059 * 0.02562 * 18 17 16 46 46 H 0.97004 * 119.99395 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.35251 * 85.32057 * 29 9 7 48 48 H 1.08999 * 110.40338 * 322.99043 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6015 0.5131 6 6 3.9388 1.5004 -1.4432 7 6 3.8347 2.7262 0.7099 8 8 2.9884 3.5207 1.0613 9 7 5.1364 2.9758 0.9547 10 6 5.6760 4.2092 1.5457 11 6 7.2047 4.0316 1.6602 12 6 7.3771 2.4896 1.6512 13 1 7.2138 2.0724 2.6448 14 7 8.6955 2.1116 1.1363 15 6 9.4164 2.8001 0.2213 16 6 10.5604 2.1001 0.0385 17 6 11.6962 2.4543 -0.8866 18 7 12.7236 3.1854 -0.1409 19 6 13.8579 3.6129 -0.7777 20 1 13.9949 3.4115 -1.8299 21 6 14.8312 4.3062 -0.0712 22 7 15.9212 4.7176 -0.6835 23 14 14.5938 4.6552 1.7485 24 1 15.1635 3.5389 2.5451 25 1 15.2851 5.9204 2.1041 26 1 13.1439 4.7837 2.0428 27 7 10.4845 1.0321 0.8403 28 7 9.3674 1.0680 1.4771 29 6 6.2547 2.0560 0.6756 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5682 2.4004 -1.9338 36 1 5.0287 1.5086 -1.4446 37 1 3.5814 0.6211 -1.9790 38 1 5.2458 4.3652 2.5350 39 1 5.4487 5.0606 0.9043 40 1 7.5732 4.4553 2.5943 41 1 7.7102 4.4811 0.8056 42 1 9.1353 3.7221 -0.2658 43 1 12.1268 1.5419 -1.2991 44 1 11.3226 3.0790 -1.6980 45 1 12.6007 3.3660 0.8043 46 1 16.6015 5.2017 -0.1897 47 1 6.5865 2.1650 -0.3570 48 1 5.9577 1.0259 0.8727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098622624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:14 Heat of formation + Delta-G solvation = 48.808897 kcal Electronic energy + Delta-G solvation = -29013.572387 eV Core-core repulsion = 24914.216438 eV Total energy + Delta-G solvation = -4099.355949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 6.79 seconds Orbital eigenvalues (eV) -43.29065 -40.86548 -38.89665 -37.72568 -35.31634 -34.23911 -33.16975 -32.05402 -31.37674 -30.43013 -30.24598 -29.33673 -26.30285 -25.77527 -24.14325 -23.35303 -22.82912 -22.39481 -21.05348 -20.84047 -20.11116 -18.17513 -17.96362 -17.47821 -17.17085 -16.62234 -16.32586 -16.06463 -15.74273 -14.94104 -14.70760 -14.50117 -14.44021 -14.17333 -14.09441 -13.97845 -13.60124 -13.24203 -13.09538 -12.98139 -12.82419 -12.71795 -12.51124 -12.50004 -12.38925 -12.20482 -11.89251 -11.70578 -11.62341 -11.49715 -11.17963 -10.90654 -10.65652 -10.50928 -10.20751 -10.10251 -9.96849 -9.61919 -9.35485 -9.11249 -8.93024 -7.26822 -5.78424 -3.14437 1.52233 1.79113 2.02726 2.28664 2.65700 3.21090 3.36762 3.42011 3.45523 3.52847 3.63942 3.92121 4.12728 4.23712 4.26609 4.37217 4.46069 4.56273 4.56557 4.58699 4.67779 4.72745 4.83729 4.85418 4.97020 5.05521 5.08194 5.11966 5.19046 5.23138 5.25884 5.35323 5.40523 5.49923 5.52046 5.56129 5.63046 5.65725 5.68627 6.16767 6.48986 6.50802 6.51287 6.61088 6.77853 7.57913 7.95650 8.40076 8.58657 9.17921 9.90432 10.10050 11.39585 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002082 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.035424 B =13443.131302 C =13848.937569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.075 3.925 5 H 0.086 0.914 6 C -0.173 4.173 7 C 0.536 3.464 8 O -0.509 6.509 9 N -0.618 5.618 10 C 0.112 3.888 11 C -0.143 4.143 12 C 0.135 3.865 13 H 0.131 0.869 14 N -0.294 5.294 15 C -0.042 4.042 16 C -0.007 4.007 17 C 0.237 3.763 18 N -0.749 5.749 19 C -0.245 4.245 20 H 0.094 0.906 21 C 0.008 3.992 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.250 5.250 28 N -0.091 5.091 29 C 0.091 3.909 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.190 0.810 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.087 0.913 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.887 -7.226 2.081 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.014 3.986 5 H 0.104 0.896 6 C -0.230 4.230 7 C 0.323 3.677 8 O -0.382 6.382 9 N -0.356 5.356 10 C -0.010 4.010 11 C -0.181 4.181 12 C 0.031 3.969 13 H 0.149 0.851 14 N -0.088 5.088 15 C -0.192 4.192 16 C -0.145 4.145 17 C 0.108 3.892 18 N -0.396 5.396 19 C -0.375 4.375 20 H 0.111 0.889 21 C -0.188 4.188 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.206 1.206 27 N -0.118 5.118 28 N -0.070 5.070 29 C -0.034 4.034 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.207 0.793 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -31.407 -7.874 2.954 32.513 hybrid contribution 0.117 1.046 0.755 1.296 sum -31.290 -6.828 3.709 32.240 Atomic orbital electron populations 1.21733 0.93184 1.02402 1.03494 1.22635 0.96145 0.83186 1.00290 1.88053 1.17965 1.26704 1.94951 1.21816 0.84075 0.95848 0.96870 0.89636 1.22261 1.01894 1.04238 0.94625 1.20083 0.80320 0.88172 0.79111 1.90758 1.48767 1.48236 1.50456 1.48280 1.05270 1.18196 1.63860 1.21947 0.91624 0.87479 0.99947 1.23175 0.95995 0.92958 1.05995 1.22617 0.77891 0.97051 0.99314 0.85095 1.47069 1.15200 1.17566 1.28955 1.23364 0.94692 1.02333 0.98827 1.22550 0.97435 0.93155 1.01361 1.18933 0.84191 0.95865 0.90185 1.42643 1.20234 1.67844 1.08830 1.19034 0.93669 1.29009 0.95745 0.88868 1.24633 0.96380 1.00388 0.97418 1.69696 1.09327 1.43478 1.35441 0.86554 0.77158 0.77724 0.87087 1.20957 1.21705 1.20640 1.75135 1.09433 1.20265 1.06956 1.78321 1.01326 1.06167 1.21136 1.22717 0.86119 0.94939 0.99581 0.90842 0.91625 0.91651 0.92966 0.93116 0.90900 0.90784 0.90759 0.90172 0.89964 0.87810 0.88430 0.79269 0.93381 0.93573 0.80498 0.93003 0.89533 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.43 16 2 C 0.05 0.33 6.47 37.16 0.24 0.57 16 3 O -0.36 -3.36 9.53 -55.05 -0.52 -3.89 16 4 C 0.08 0.56 2.51 -27.88 -0.07 0.49 16 5 H 0.09 0.44 7.10 -51.92 -0.37 0.08 16 6 C -0.17 -1.00 9.39 37.16 0.35 -0.65 16 7 C 0.54 5.16 7.20 -10.98 -0.08 5.08 16 8 O -0.51 -7.08 16.85 -14.26 -0.24 -7.32 16 9 N -0.62 -4.40 3.33 -170.49 -0.57 -4.96 16 10 C 0.11 0.70 6.87 -3.07 -0.02 0.67 16 11 C -0.14 -0.79 6.35 -24.90 -0.16 -0.95 16 12 C 0.14 0.94 4.10 -65.78 -0.27 0.67 16 13 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 14 N -0.29 -3.30 3.38 -52.68 -0.18 -3.47 16 15 C -0.04 -0.52 10.60 -17.05 -0.18 -0.70 16 16 C -0.01 -0.12 6.62 -82.77 -0.55 -0.67 16 17 C 0.24 4.51 6.82 -5.19 -0.04 4.47 16 18 N -0.75 -17.82 5.40 -61.09 -0.33 -18.15 16 19 C -0.25 -6.85 10.47 -15.06 -0.16 -7.01 16 20 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 21 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 22 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 23 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16 24 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 27 N -0.25 -4.49 12.41 33.29 0.41 -4.07 16 28 N -0.09 -1.37 13.17 60.35 0.79 -0.57 16 29 C 0.09 0.52 5.32 -2.51 -0.01 0.51 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.24 7.79 -51.93 -0.40 -0.16 16 34 H 0.05 0.26 8.09 -51.93 -0.42 -0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.35 6.04 -51.93 -0.31 0.04 16 37 H 0.07 0.35 7.79 -51.93 -0.40 -0.05 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.53 6.30 -51.93 -0.33 0.20 16 42 H 0.19 1.71 6.91 -52.49 -0.36 1.35 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.36 8.70 5.52 -40.82 -0.23 8.48 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.09 0.48 7.19 -51.93 -0.37 0.11 16 48 H 0.09 0.43 7.31 -51.93 -0.38 0.05 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -37.34 392.81 -6.71 -44.05 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.40 Total: 0.91 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.66 Total: 2.19 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.91 Total: -59.48 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.76 Total: -11.21 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.34 -6.71 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098622624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.858 kcal (2) G-P(sol) polarization free energy of solvation -37.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.79 seconds