Wall clock time and date at job start Tue Mar 31 2020 20:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.46915 * 2 1 4 4 C 1.42902 * 113.99764 * 180.02562 * 3 2 1 5 5 H 1.09010 * 109.46973 * 329.99266 * 4 3 2 6 6 C 1.52997 * 109.47747 * 89.99473 * 4 3 2 7 7 C 1.50701 * 109.46926 * 210.00292 * 4 3 2 8 8 O 1.21284 * 119.99866 * 353.13360 * 7 4 3 9 9 N 1.34777 * 120.00335 * 173.14074 * 7 4 3 10 10 C 1.47022 * 125.65154 * 175.19829 * 9 7 4 11 11 C 1.54321 * 107.27048 * 178.90284 * 10 9 7 12 12 C 1.55157 * 102.94351 * 337.80793 * 11 10 9 13 13 H 1.08997 * 111.00737 * 277.38955 * 12 11 10 14 14 N 1.46499 * 111.00494 * 153.57660 * 12 11 10 15 15 C 1.35312 * 125.86608 * 329.60386 * 14 12 11 16 16 C 1.35353 * 106.17406 * 179.97438 * 15 14 12 17 17 C 1.50706 * 126.75339 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.47447 * 95.03984 * 17 16 15 19 19 C 1.36934 * 120.00102 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99799 * 0.02562 * 19 18 17 21 21 C 1.38820 * 120.00120 * 179.97438 * 19 18 17 22 22 N 1.31614 * 119.99696 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99740 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47150 * 89.99793 * 23 21 19 25 25 H 1.48500 * 109.46623 * 209.99639 * 23 21 19 26 26 H 1.48495 * 109.46992 * 329.99390 * 23 21 19 27 27 N 1.33771 * 106.49740 * 359.97438 * 16 15 14 28 28 N 1.28634 * 108.88693 * 0.02562 * 27 16 15 29 29 C 1.47468 * 125.62642 * 355.11684 * 9 7 4 30 30 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47282 * 300.00490 * 1 2 3 32 32 H 1.09003 * 109.46871 * 60.00126 * 1 2 3 33 33 H 1.09003 * 109.46699 * 239.99940 * 2 1 3 34 34 H 1.09003 * 109.46871 * 119.99874 * 2 1 3 35 35 H 1.08999 * 109.46864 * 64.35198 * 6 4 3 36 36 H 1.08996 * 109.47395 * 184.34866 * 6 4 3 37 37 H 1.09000 * 109.47171 * 304.34986 * 6 4 3 38 38 H 1.09005 * 109.87855 * 59.48691 * 10 9 7 39 39 H 1.08997 * 110.01410 * 298.39470 * 10 9 7 40 40 H 1.09000 * 110.71864 * 219.44928 * 11 10 9 41 41 H 1.08995 * 110.71983 * 96.17328 * 11 10 9 42 42 H 1.07998 * 126.91577 * 359.91942 * 15 14 12 43 43 H 1.08995 * 109.47075 * 215.04492 * 17 16 15 44 44 H 1.09004 * 109.46786 * 335.04484 * 17 16 15 45 45 H 0.97007 * 120.00059 * 0.02562 * 18 17 16 46 46 H 0.97004 * 119.99395 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.35251 * 85.32057 * 29 9 7 48 48 H 1.08999 * 110.40338 * 322.99043 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8635 0.6015 0.5131 6 6 3.9388 1.5004 -1.4432 7 6 3.8347 2.7262 0.7099 8 8 2.9884 3.5207 1.0613 9 7 5.1364 2.9758 0.9547 10 6 5.6760 4.2092 1.5457 11 6 7.2047 4.0316 1.6602 12 6 7.3771 2.4896 1.6512 13 1 7.2138 2.0724 2.6448 14 7 8.6955 2.1116 1.1363 15 6 9.4164 2.8001 0.2213 16 6 10.5604 2.1001 0.0385 17 6 11.6962 2.4543 -0.8866 18 7 12.7236 3.1854 -0.1409 19 6 13.8579 3.6129 -0.7777 20 1 13.9949 3.4115 -1.8299 21 6 14.8312 4.3062 -0.0712 22 7 15.9212 4.7176 -0.6835 23 14 14.5938 4.6552 1.7485 24 1 15.1635 3.5389 2.5451 25 1 15.2851 5.9204 2.1041 26 1 13.1439 4.7837 2.0428 27 7 10.4845 1.0321 0.8403 28 7 9.3674 1.0680 1.4771 29 6 6.2547 2.0560 0.6756 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.5682 2.4004 -1.9338 36 1 5.0287 1.5086 -1.4446 37 1 3.5814 0.6211 -1.9790 38 1 5.2458 4.3652 2.5350 39 1 5.4487 5.0606 0.9043 40 1 7.5732 4.4553 2.5943 41 1 7.7102 4.4811 0.8056 42 1 9.1353 3.7221 -0.2658 43 1 12.1268 1.5419 -1.2991 44 1 11.3226 3.0790 -1.6980 45 1 12.6007 3.3660 0.8043 46 1 16.6015 5.2017 -0.1897 47 1 6.5865 2.1650 -0.3570 48 1 5.9577 1.0259 0.8727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098622624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:12 Heat of formation + Delta-G solvation = 21.647511 kcal Electronic energy + Delta-G solvation = -29014.750193 eV Core-core repulsion = 24914.216438 eV Total energy + Delta-G solvation = -4100.533755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.33921 -41.50548 -39.47270 -38.42553 -36.97713 -35.27070 -33.93142 -33.60194 -32.12446 -31.84257 -30.80801 -29.95427 -27.89901 -26.36868 -24.85381 -24.39434 -23.84144 -23.30820 -22.24193 -21.68507 -20.70130 -19.90351 -18.67827 -18.38217 -17.84972 -17.40091 -16.92227 -16.90448 -16.49620 -16.39219 -16.07525 -15.63985 -15.28594 -14.99890 -14.90314 -14.64959 -14.56286 -14.34404 -14.15254 -13.95486 -13.66308 -13.46343 -13.42394 -13.24912 -13.08707 -12.93815 -12.88702 -12.83563 -12.60370 -12.34504 -12.14913 -12.10753 -12.00744 -11.82653 -11.78946 -11.20542 -11.02606 -10.98557 -10.58190 -10.26820 -9.93973 -9.29829 -8.00738 -5.33927 0.54045 1.06228 1.35509 1.35903 1.41583 1.42995 1.48676 1.63115 2.49101 2.71756 2.97285 3.10789 3.26143 3.31354 3.47941 3.65645 3.77018 3.82808 3.84104 3.90040 3.96698 4.01903 4.15642 4.22877 4.25273 4.29191 4.41185 4.45371 4.52473 4.60749 4.65106 4.69942 4.74045 4.84548 4.85761 4.87974 4.98572 5.02611 5.11789 5.12336 5.17379 5.24668 5.62130 5.77772 6.00529 6.20341 6.22665 6.91540 7.07915 7.48259 7.82997 8.02100 9.20330 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002082 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.035424 B =13443.131302 C =13848.937569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.073 3.927 5 H 0.111 0.889 6 C -0.167 4.167 7 C 0.531 3.469 8 O -0.563 6.563 9 N -0.611 5.611 10 C 0.111 3.889 11 C -0.132 4.132 12 C 0.128 3.872 13 H 0.143 0.857 14 N -0.275 5.275 15 C -0.013 4.013 16 C -0.038 4.038 17 C 0.237 3.763 18 N -0.753 5.753 19 C -0.230 4.230 20 H 0.067 0.933 21 C -0.059 4.059 22 N -0.980 5.980 23 Si 0.950 3.050 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.255 1.255 27 N -0.293 5.293 28 N -0.102 5.102 29 C 0.094 3.906 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.228 0.772 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.363 0.637 46 H 0.258 0.742 47 H 0.097 0.903 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.711 -7.605 2.896 33.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.029 4.029 3 O -0.310 6.310 4 C 0.013 3.987 5 H 0.129 0.871 6 C -0.225 4.225 7 C 0.320 3.680 8 O -0.440 6.440 9 N -0.347 5.347 10 C -0.012 4.012 11 C -0.171 4.171 12 C 0.026 3.974 13 H 0.160 0.840 14 N -0.069 5.069 15 C -0.164 4.164 16 C -0.176 4.176 17 C 0.110 3.890 18 N -0.398 5.398 19 C -0.361 4.361 20 H 0.085 0.915 21 C -0.250 4.250 22 N -0.631 5.631 23 Si 0.778 3.222 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.180 1.180 27 N -0.160 5.160 28 N -0.081 5.081 29 C -0.030 4.030 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.244 0.756 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.195 0.805 46 H 0.067 0.933 47 H 0.115 0.885 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -33.272 -8.301 3.777 34.499 hybrid contribution 0.574 1.111 0.435 1.324 sum -32.698 -7.190 4.212 33.743 Atomic orbital electron populations 1.21770 0.93127 1.03470 1.02496 1.22839 0.96339 0.82135 1.01561 1.88024 1.19166 1.28667 1.95165 1.21975 0.83595 0.95445 0.97732 0.87128 1.22240 1.02658 1.04068 0.93499 1.20574 0.80455 0.88382 0.78552 1.90730 1.50304 1.50079 1.52891 1.48255 1.04958 1.18648 1.62844 1.22011 0.92067 0.87239 0.99853 1.23176 0.95215 0.91692 1.07004 1.22983 0.76083 0.98290 1.00028 0.83956 1.47311 1.15813 1.16140 1.27633 1.23732 0.92930 1.02297 0.97465 1.22198 0.98363 0.94533 1.02530 1.18937 0.84108 0.94985 0.90958 1.42669 1.20098 1.68076 1.08991 1.19052 0.94803 1.27399 0.94814 0.91466 1.25390 0.96353 1.01258 1.02037 1.69860 1.10583 1.45291 1.37322 0.85483 0.78337 0.76984 0.81372 1.21446 1.21868 1.17999 1.75082 1.11090 1.21628 1.08216 1.78238 1.01051 1.07511 1.21275 1.22802 0.85057 0.95438 0.99725 0.88727 0.92931 0.92334 0.91268 0.92118 0.92516 0.89358 0.89451 0.90351 0.90004 0.86769 0.87559 0.75583 0.94763 0.91361 0.80480 0.93327 0.88525 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.50 6.47 71.98 0.47 0.96 16 3 O -0.39 -7.00 9.53 -130.03 -1.24 -8.24 16 4 C 0.07 0.95 2.51 29.85 0.08 1.02 16 5 H 0.11 0.81 7.10 -2.38 -0.02 0.79 16 6 C -0.17 -1.55 9.39 71.98 0.68 -0.88 16 7 C 0.53 9.53 7.20 87.66 0.63 10.16 16 8 O -0.56 -15.70 16.85 15.91 0.27 -15.43 16 9 N -0.61 -7.13 3.33 -811.68 -2.70 -9.83 16 10 C 0.11 1.09 6.87 86.73 0.60 1.68 16 11 C -0.13 -0.94 6.35 31.78 0.20 -0.74 16 12 C 0.13 1.27 4.10 46.38 0.19 1.46 16 13 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 14 N -0.28 -5.15 3.38 -320.59 -1.08 -6.23 16 15 C -0.01 -0.27 10.60 83.49 0.89 0.62 16 16 C -0.04 -1.17 6.62 41.60 0.28 -0.90 16 17 C 0.24 8.70 6.82 85.64 0.58 9.29 16 18 N -0.75 -34.82 5.40 -347.18 -1.87 -36.70 16 19 C -0.23 -12.87 10.47 84.04 0.88 -11.99 16 20 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 21 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 22 N -0.98 -62.13 13.97 21.65 0.30 -61.82 16 23 Si 0.95 45.81 27.74 68.60 1.90 47.71 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.26 -11.11 6.52 99.48 0.65 -10.46 16 27 N -0.29 -10.02 12.41 -48.59 -0.60 -10.62 16 28 N -0.10 -2.81 13.17 37.02 0.49 -2.33 16 29 C 0.09 0.72 5.32 86.85 0.46 1.18 16 30 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.47 7.79 -2.39 -0.02 0.46 16 34 H 0.06 0.50 8.09 -2.39 -0.02 0.48 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.54 6.04 -2.39 -0.01 0.52 16 37 H 0.09 0.59 7.79 -2.39 -0.02 0.57 16 38 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.65 16 41 H 0.11 0.63 6.30 -2.39 -0.02 0.61 16 42 H 0.23 2.85 6.91 -2.91 -0.02 2.83 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 45 H 0.36 16.63 5.52 -92.70 -0.51 16.12 16 46 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.10 0.63 7.19 -2.39 -0.02 0.62 16 48 H 0.11 0.54 7.31 -2.39 -0.02 0.53 16 Total: -1.00 -83.63 392.81 2.99 -80.63 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.40 Total: 14.70 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 7.13 Total: 8.16 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -5.47 Total: -127.53 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.97 Total: -23.67 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.90 Total: 47.71 kcal Total: -83.63 2.99 -80.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098622624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.281 kcal (2) G-P(sol) polarization free energy of solvation -83.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds