Wall clock time and date at job start Tue Mar 31 2020 20:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47594 * 2 1 4 4 C 1.42896 * 114.00184 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47026 * 29.99700 * 4 3 2 6 6 C 1.52998 * 109.46926 * 269.99705 * 4 3 2 7 7 C 1.50702 * 109.47323 * 149.99447 * 4 3 2 8 8 O 1.21283 * 119.99727 * 12.52586 * 7 4 3 9 9 N 1.34768 * 120.00168 * 192.52450 * 7 4 3 10 10 C 1.47027 * 125.65204 * 355.04494 * 9 7 4 11 11 C 1.54320 * 107.27630 * 178.99798 * 10 9 7 12 12 C 1.55162 * 102.94043 * 337.80485 * 11 10 9 13 13 H 1.08992 * 111.00417 * 277.39099 * 12 11 10 14 14 N 1.46497 * 111.00266 * 153.57288 * 12 11 10 15 15 C 1.35315 * 125.87252 * 329.60430 * 14 12 11 16 16 C 1.35350 * 106.17662 * 179.97438 * 15 14 12 17 17 C 1.50699 * 126.75137 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.46810 * 95.05329 * 17 16 15 19 19 C 1.36937 * 119.99459 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00514 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00113 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99515 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00523 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47106 * 89.99728 * 23 21 19 25 25 H 1.48497 * 109.47387 * 210.00324 * 23 21 19 26 26 H 1.48500 * 109.47090 * 330.00165 * 23 21 19 27 27 N 1.33771 * 106.49660 * 0.02562 * 16 15 14 28 28 N 1.28635 * 108.88808 * 359.97438 * 27 16 15 29 29 C 1.47471 * 125.62963 * 175.07302 * 9 7 4 30 30 H 1.08998 * 109.47588 * 300.00426 * 1 2 3 31 31 H 1.09000 * 109.47218 * 60.00257 * 1 2 3 32 32 H 1.09003 * 109.48023 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47178 * 239.99242 * 2 1 3 34 34 H 1.09009 * 109.46708 * 119.99938 * 2 1 3 35 35 H 1.09000 * 109.47483 * 64.75114 * 6 4 3 36 36 H 1.09004 * 109.47135 * 184.74680 * 6 4 3 37 37 H 1.08997 * 109.47083 * 304.74146 * 6 4 3 38 38 H 1.09000 * 109.87948 * 59.57666 * 10 9 7 39 39 H 1.09007 * 109.87698 * 298.41660 * 10 9 7 40 40 H 1.08996 * 110.72158 * 219.44763 * 11 10 9 41 41 H 1.09000 * 110.71919 * 96.16537 * 11 10 9 42 42 H 1.07998 * 126.91104 * 359.92172 * 15 14 12 43 43 H 1.09000 * 109.47281 * 215.05168 * 17 16 15 44 44 H 1.08999 * 109.47099 * 335.05189 * 17 16 15 45 45 H 0.96989 * 120.00427 * 359.97438 * 18 17 16 46 46 H 0.96998 * 119.99526 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.35280 * 85.22955 * 29 9 7 48 48 H 1.09000 * 110.40384 * 322.88923 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6013 -0.5129 6 6 3.9386 1.5005 1.4433 7 6 3.8349 2.7261 -0.7100 8 8 3.0014 3.5679 -0.9700 9 7 5.1223 2.9229 -1.0564 10 6 6.2466 2.0392 -0.7144 11 6 7.5172 2.6505 -1.3415 12 6 6.9497 3.5415 -2.4780 13 1 6.7440 2.9516 -3.3711 14 7 7.8598 4.6486 -2.7813 15 6 8.6902 5.2560 -1.9024 16 6 9.3417 6.2154 -2.6004 17 6 10.3783 7.1709 -2.0680 18 7 11.7162 6.6294 -2.3189 19 6 12.8238 7.3286 -1.9195 20 1 12.7110 8.2795 -1.4199 21 6 14.0915 6.8154 -2.1568 22 7 14.2289 5.6563 -2.7652 23 14 15.6024 7.7688 -1.6113 24 1 15.9692 7.3668 -0.2297 25 1 16.7319 7.4738 -2.5291 26 1 15.3071 9.2238 -1.6416 27 7 8.8837 6.1492 -3.8555 28 7 8.0071 5.2108 -3.9299 29 6 5.6365 4.0608 -1.8409 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.7205 0.5510 1.9321 36 1 5.0152 1.6710 1.4449 37 1 3.4421 2.3084 1.9806 38 1 6.0733 1.0438 -1.1234 39 1 6.3577 1.9831 0.3686 40 1 8.1604 1.8701 -1.7481 41 1 8.0558 3.2540 -0.6108 42 1 8.8086 5.0229 -0.8545 43 1 10.2763 8.1337 -2.5687 44 1 10.2347 7.3021 -0.9955 45 1 11.8175 5.7753 -2.7673 46 1 15.1148 5.2978 -2.9314 47 1 5.8412 4.9095 -1.1883 48 1 4.9236 4.3408 -2.6164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098622627.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:41 Heat of formation + Delta-G solvation = 46.151750 kcal Electronic energy + Delta-G solvation = -28727.822272 eV Core-core repulsion = 24628.351101 eV Total energy + Delta-G solvation = -4099.471171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.08914 -40.80629 -38.85075 -37.65846 -35.11841 -34.20922 -32.94609 -31.96480 -31.09347 -30.62578 -29.96052 -29.10742 -25.95321 -25.72003 -23.83293 -23.22744 -23.04141 -22.73348 -20.92069 -20.65608 -20.08859 -17.98797 -17.71766 -17.39195 -17.09149 -16.33641 -16.12391 -15.93354 -15.65210 -14.99637 -14.82257 -14.53114 -14.35578 -14.06714 -13.95611 -13.67032 -13.45926 -13.22876 -13.12248 -13.03297 -12.79825 -12.66288 -12.54471 -12.42597 -12.17841 -12.01062 -11.88233 -11.64282 -11.45148 -11.25923 -10.91438 -10.81146 -10.48874 -10.47305 -10.10532 -10.02225 -9.88572 -9.73443 -9.27729 -8.90719 -8.86728 -6.92585 -5.74851 -3.04418 1.69896 1.87505 2.09857 2.46344 2.87196 3.21682 3.45042 3.50587 3.52622 3.63090 3.76569 4.02546 4.19628 4.24545 4.32531 4.39672 4.48783 4.56722 4.62100 4.69040 4.72771 4.76643 4.83276 4.97433 5.05611 5.08098 5.18569 5.21163 5.24022 5.28061 5.33030 5.40783 5.47243 5.53385 5.56620 5.61859 5.66339 5.80268 6.16246 6.37062 6.52557 6.63431 6.70086 6.76786 6.86147 7.63626 7.70741 8.42432 8.78991 9.54381 10.09753 10.45838 11.47866 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027036 B = 0.001847 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.392969 B =15152.432527 C =15595.300862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.078 3.922 5 H 0.086 0.914 6 C -0.175 4.175 7 C 0.534 3.466 8 O -0.509 6.509 9 N -0.619 5.619 10 C 0.098 3.902 11 C -0.142 4.142 12 C 0.136 3.864 13 H 0.130 0.870 14 N -0.293 5.293 15 C -0.043 4.043 16 C -0.001 4.001 17 C 0.232 3.768 18 N -0.725 5.725 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.092 5.092 29 C 0.104 3.896 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.188 0.812 43 H 0.040 0.960 44 H 0.038 0.962 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.082 0.918 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.712 -17.003 9.300 31.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.017 3.983 5 H 0.104 0.896 6 C -0.232 4.232 7 C 0.321 3.679 8 O -0.382 6.382 9 N -0.357 5.357 10 C -0.025 4.025 11 C -0.181 4.181 12 C 0.032 3.968 13 H 0.147 0.853 14 N -0.087 5.087 15 C -0.193 4.193 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.370 5.370 19 C -0.371 4.371 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.117 5.117 28 N -0.070 5.070 29 C -0.020 4.020 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.205 0.795 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.765 -16.247 7.763 31.434 hybrid contribution 1.484 -0.308 1.253 1.967 sum -24.281 -16.555 9.016 30.740 Atomic orbital electron populations 1.21734 0.93225 1.02372 1.03543 1.22622 0.96139 0.83220 1.00203 1.88068 1.18051 1.26645 1.94941 1.21783 0.84005 0.95719 0.96831 0.89604 1.22310 1.02115 1.04080 0.94740 1.20115 0.80307 0.88434 0.79051 1.90768 1.49414 1.44892 1.53150 1.48279 1.06577 1.25562 1.55305 1.22246 0.84769 0.94333 1.01191 1.23142 0.97453 1.00309 0.97174 1.22586 0.88109 0.85548 1.00587 0.85254 1.47009 1.28553 1.25356 1.07799 1.23284 0.98025 0.98971 0.99050 1.22479 1.01160 1.00116 0.90137 1.18964 0.82185 0.92148 0.96435 1.42294 0.98787 1.24514 1.71440 1.19240 0.84760 1.01901 1.31194 0.90868 1.24756 0.97491 0.97337 1.01307 1.69686 1.22137 1.19044 1.47187 0.86153 0.82901 0.79183 0.77723 1.21760 1.21798 1.20656 1.75120 1.06196 1.11600 1.18819 1.78316 1.16699 1.06890 1.05095 1.22491 0.94157 0.89516 0.95858 0.91650 0.91603 0.90869 0.93139 0.93021 0.90903 0.90591 0.90741 0.90179 0.89691 0.87703 0.88355 0.79499 0.94236 0.94435 0.78108 0.93541 0.90000 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.15 0.38 -0.40 16 2 C 0.05 0.31 6.47 37.15 0.24 0.55 16 3 O -0.36 -3.32 9.55 -54.82 -0.52 -3.84 16 4 C 0.08 0.55 2.53 -27.88 -0.07 0.48 16 5 H 0.09 0.37 7.49 -51.93 -0.39 -0.02 16 6 C -0.17 -0.87 9.44 37.16 0.35 -0.52 16 7 C 0.53 5.36 7.17 -10.99 -0.08 5.28 16 8 O -0.51 -7.59 16.84 -14.04 -0.24 -7.83 16 9 N -0.62 -4.75 3.33 -170.48 -0.57 -5.32 16 10 C 0.10 0.41 6.06 -3.06 -0.02 0.39 16 11 C -0.14 -0.79 6.35 -24.90 -0.16 -0.95 16 12 C 0.14 1.16 4.10 -65.78 -0.27 0.89 16 13 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 14 N -0.29 -3.90 3.38 -52.68 -0.18 -4.07 16 15 C -0.04 -0.62 10.60 -17.05 -0.18 -0.80 16 16 C 0.00 -0.03 6.61 -82.78 -0.55 -0.57 16 17 C 0.23 4.81 6.82 -5.20 -0.04 4.78 16 18 N -0.73 -18.74 5.59 -61.09 -0.34 -19.08 16 19 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 23 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 N -0.25 -5.04 12.41 33.29 0.41 -4.63 16 28 N -0.09 -1.59 13.17 60.35 0.79 -0.80 16 29 C 0.10 0.93 6.59 -2.50 -0.02 0.92 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.23 8.09 -51.93 -0.42 -0.19 16 34 H 0.05 0.21 7.98 -51.92 -0.41 -0.21 16 35 H 0.07 0.25 7.98 -51.93 -0.41 -0.16 16 36 H 0.08 0.26 5.52 -51.93 -0.29 -0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.18 7.94 -51.93 -0.41 -0.23 16 39 H 0.09 0.23 6.04 -51.93 -0.31 -0.08 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.56 6.31 -51.93 -0.33 0.23 16 42 H 0.19 2.01 6.91 -52.49 -0.36 1.65 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.39 10.71 7.66 -40.82 -0.31 10.40 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 LS Contribution 396.13 15.07 5.97 5.97 Total: -1.00 -37.84 396.13 -7.04 -44.88 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.42 Total: 2.36 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.65 Total: 2.71 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: 0.84 Total: -61.57 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.76 Total: -11.67 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.84 -7.04 -44.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098622627.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.032 kcal (2) G-P(sol) polarization free energy of solvation -37.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds