Wall clock time and date at job start Tue Mar 31 2020 20:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47594 * 2 1 4 4 C 1.42896 * 114.00184 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47026 * 29.99700 * 4 3 2 6 6 C 1.52998 * 109.46926 * 269.99705 * 4 3 2 7 7 C 1.50702 * 109.47323 * 149.99447 * 4 3 2 8 8 O 1.21283 * 119.99727 * 12.52586 * 7 4 3 9 9 N 1.34768 * 120.00168 * 192.52450 * 7 4 3 10 10 C 1.47027 * 125.65204 * 355.04494 * 9 7 4 11 11 C 1.54320 * 107.27630 * 178.99798 * 10 9 7 12 12 C 1.55162 * 102.94043 * 337.80485 * 11 10 9 13 13 H 1.08992 * 111.00417 * 277.39099 * 12 11 10 14 14 N 1.46497 * 111.00266 * 153.57288 * 12 11 10 15 15 C 1.35315 * 125.87252 * 329.60430 * 14 12 11 16 16 C 1.35350 * 106.17662 * 179.97438 * 15 14 12 17 17 C 1.50699 * 126.75137 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.46810 * 95.05329 * 17 16 15 19 19 C 1.36937 * 119.99459 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00514 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00113 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99515 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00523 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47106 * 89.99728 * 23 21 19 25 25 H 1.48497 * 109.47387 * 210.00324 * 23 21 19 26 26 H 1.48500 * 109.47090 * 330.00165 * 23 21 19 27 27 N 1.33771 * 106.49660 * 0.02562 * 16 15 14 28 28 N 1.28635 * 108.88808 * 359.97438 * 27 16 15 29 29 C 1.47471 * 125.62963 * 175.07302 * 9 7 4 30 30 H 1.08998 * 109.47588 * 300.00426 * 1 2 3 31 31 H 1.09000 * 109.47218 * 60.00257 * 1 2 3 32 32 H 1.09003 * 109.48023 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47178 * 239.99242 * 2 1 3 34 34 H 1.09009 * 109.46708 * 119.99938 * 2 1 3 35 35 H 1.09000 * 109.47483 * 64.75114 * 6 4 3 36 36 H 1.09004 * 109.47135 * 184.74680 * 6 4 3 37 37 H 1.08997 * 109.47083 * 304.74146 * 6 4 3 38 38 H 1.09000 * 109.87948 * 59.57666 * 10 9 7 39 39 H 1.09007 * 109.87698 * 298.41660 * 10 9 7 40 40 H 1.08996 * 110.72158 * 219.44763 * 11 10 9 41 41 H 1.09000 * 110.71919 * 96.16537 * 11 10 9 42 42 H 1.07998 * 126.91104 * 359.92172 * 15 14 12 43 43 H 1.09000 * 109.47281 * 215.05168 * 17 16 15 44 44 H 1.08999 * 109.47099 * 335.05189 * 17 16 15 45 45 H 0.96989 * 120.00427 * 359.97438 * 18 17 16 46 46 H 0.96998 * 119.99526 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.35280 * 85.22955 * 29 9 7 48 48 H 1.09000 * 110.40384 * 322.88923 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8635 0.6013 -0.5129 6 6 3.9386 1.5005 1.4433 7 6 3.8349 2.7261 -0.7100 8 8 3.0014 3.5679 -0.9700 9 7 5.1223 2.9229 -1.0564 10 6 6.2466 2.0392 -0.7144 11 6 7.5172 2.6505 -1.3415 12 6 6.9497 3.5415 -2.4780 13 1 6.7440 2.9516 -3.3711 14 7 7.8598 4.6486 -2.7813 15 6 8.6902 5.2560 -1.9024 16 6 9.3417 6.2154 -2.6004 17 6 10.3783 7.1709 -2.0680 18 7 11.7162 6.6294 -2.3189 19 6 12.8238 7.3286 -1.9195 20 1 12.7110 8.2795 -1.4199 21 6 14.0915 6.8154 -2.1568 22 7 14.2289 5.6563 -2.7652 23 14 15.6024 7.7688 -1.6113 24 1 15.9692 7.3668 -0.2297 25 1 16.7319 7.4738 -2.5291 26 1 15.3071 9.2238 -1.6416 27 7 8.8837 6.1492 -3.8555 28 7 8.0071 5.2108 -3.9299 29 6 5.6365 4.0608 -1.8409 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 3.7205 0.5510 1.9321 36 1 5.0152 1.6710 1.4449 37 1 3.4421 2.3084 1.9806 38 1 6.0733 1.0438 -1.1234 39 1 6.3577 1.9831 0.3686 40 1 8.1604 1.8701 -1.7481 41 1 8.0558 3.2540 -0.6108 42 1 8.8086 5.0229 -0.8545 43 1 10.2763 8.1337 -2.5687 44 1 10.2347 7.3021 -0.9955 45 1 11.8175 5.7753 -2.7673 46 1 15.1148 5.2978 -2.9314 47 1 5.8412 4.9095 -1.1883 48 1 4.9236 4.3408 -2.6164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098622627.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:39 Heat of formation + Delta-G solvation = 18.225859 kcal Electronic energy + Delta-G solvation = -28729.033230 eV Core-core repulsion = 24628.351101 eV Total energy + Delta-G solvation = -4100.682129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.32642 -41.48425 -39.44694 -38.39138 -36.82022 -35.36268 -33.79571 -33.39147 -31.88369 -31.61531 -31.07450 -29.81657 -27.65508 -26.42349 -24.81496 -24.51980 -23.83425 -23.45212 -22.22920 -21.65040 -20.69705 -19.36907 -18.64973 -18.34524 -17.95382 -17.30649 -16.94513 -16.61095 -16.53403 -16.34096 -15.93858 -15.63402 -15.44600 -15.06458 -14.89765 -14.59382 -14.51426 -14.28070 -14.02151 -13.85860 -13.54840 -13.45912 -13.23749 -13.10955 -13.08293 -12.86614 -12.78340 -12.74540 -12.56150 -12.30998 -12.11837 -12.07763 -11.92477 -11.87980 -11.77418 -11.15986 -11.01732 -10.93587 -10.54771 -10.24844 -9.90332 -8.99971 -7.91617 -5.21723 0.54079 1.04873 1.39449 1.44740 1.52661 1.54040 1.62734 1.69791 2.61111 2.74522 3.01492 3.14728 3.35889 3.43312 3.47922 3.65264 3.81901 3.85735 3.92459 3.97525 4.05905 4.19403 4.21241 4.25141 4.29254 4.32134 4.42967 4.49210 4.51302 4.58106 4.69872 4.75225 4.80482 4.87104 4.88427 4.94914 4.99814 5.01842 5.12200 5.18849 5.22608 5.26664 5.53174 5.63714 6.05407 6.28178 6.28806 6.94094 7.35442 7.48448 8.06310 8.32605 9.32106 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027036 B = 0.001847 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.392969 B =15152.432527 C =15595.300862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.396 6.396 4 C 0.079 3.921 5 H 0.121 0.879 6 C -0.170 4.170 7 C 0.526 3.474 8 O -0.573 6.573 9 N -0.612 5.612 10 C 0.096 3.904 11 C -0.134 4.134 12 C 0.129 3.871 13 H 0.140 0.860 14 N -0.276 5.276 15 C -0.014 4.014 16 C -0.036 4.036 17 C 0.235 3.765 18 N -0.738 5.738 19 C -0.245 4.245 20 H 0.083 0.917 21 C -0.075 4.075 22 N -0.971 5.971 23 Si 0.978 3.022 24 H -0.282 1.282 25 H -0.299 1.299 26 H -0.270 1.270 27 N -0.296 5.296 28 N -0.112 5.112 29 C 0.106 3.894 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.229 0.771 43 H 0.027 0.973 44 H 0.064 0.936 45 H 0.372 0.628 46 H 0.250 0.750 47 H 0.074 0.926 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.439 -19.270 11.595 33.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.316 6.316 4 C 0.019 3.981 5 H 0.138 0.862 6 C -0.227 4.227 7 C 0.316 3.684 8 O -0.451 6.451 9 N -0.348 5.348 10 C -0.025 4.025 11 C -0.173 4.173 12 C 0.027 3.973 13 H 0.158 0.842 14 N -0.070 5.070 15 C -0.165 4.165 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.380 5.380 19 C -0.376 4.376 20 H 0.101 0.899 21 C -0.267 4.267 22 N -0.621 5.621 23 Si 0.807 3.193 24 H -0.209 1.209 25 H -0.226 1.226 26 H -0.195 1.195 27 N -0.163 5.163 28 N -0.090 5.090 29 C -0.019 4.019 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.245 0.755 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.513 -18.527 10.070 33.100 hybrid contribution 1.256 0.358 0.549 1.416 sum -24.258 -18.169 10.619 32.114 Atomic orbital electron populations 1.21781 0.93523 1.03441 1.02304 1.22833 0.96062 0.82046 1.01786 1.88037 1.19495 1.28849 1.95192 1.21965 0.83434 0.94801 0.97943 0.86186 1.22311 1.02940 1.04390 0.93062 1.20884 0.80220 0.88924 0.78389 1.90735 1.51317 1.47137 1.55919 1.48304 1.06949 1.25417 1.54127 1.22582 0.82387 0.94685 1.02892 1.23238 0.98296 1.00025 0.95725 1.22996 0.87384 0.84540 1.02418 0.84230 1.47327 1.27934 1.25183 1.06549 1.23706 0.95859 0.96683 1.00273 1.22305 1.02469 1.01993 0.90651 1.18974 0.80674 0.91973 0.97674 1.42479 1.00385 1.23939 1.71235 1.19693 0.85682 1.02123 1.30112 0.89881 1.25605 1.00516 0.98458 1.02139 1.69852 1.22341 1.20850 1.49106 0.85076 0.78786 0.78297 0.77184 1.20868 1.22592 1.19468 1.75047 1.07718 1.13263 1.20269 1.78209 1.16774 1.07112 1.06886 1.22306 0.93903 0.90184 0.95458 0.92481 0.93262 0.88621 0.91932 0.90841 0.88753 0.88613 0.93055 0.87045 0.87176 0.85950 0.87911 0.75479 0.95537 0.91798 0.79705 0.94085 0.90767 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 71.98 0.74 -0.73 16 2 C 0.05 0.45 6.47 71.98 0.47 0.92 16 3 O -0.40 -6.96 9.55 -130.25 -1.24 -8.20 16 4 C 0.08 0.92 2.53 29.85 0.08 1.00 16 5 H 0.12 0.52 7.49 -2.38 -0.02 0.50 16 6 C -0.17 -1.17 9.44 71.98 0.68 -0.49 16 7 C 0.53 10.09 7.17 87.66 0.63 10.71 16 8 O -0.57 -17.79 16.84 15.69 0.26 -17.53 16 9 N -0.61 -8.08 3.33 -811.66 -2.70 -10.78 16 10 C 0.10 0.36 6.06 86.73 0.53 0.89 16 11 C -0.13 -0.93 6.35 31.78 0.20 -0.73 16 12 C 0.13 1.93 4.10 46.39 0.19 2.12 16 13 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 14 N -0.28 -6.98 3.38 -320.58 -1.08 -8.06 16 15 C -0.01 -0.37 10.60 83.49 0.89 0.52 16 16 C -0.04 -1.33 6.61 41.60 0.28 -1.05 16 17 C 0.23 9.70 6.82 85.63 0.58 10.28 16 18 N -0.74 -38.24 5.59 -347.18 -1.94 -40.18 16 19 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 20 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 21 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 23 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 N -0.30 -12.20 12.41 -48.60 -0.60 -12.80 16 28 N -0.11 -3.89 13.17 37.02 0.49 -3.40 16 29 C 0.11 1.82 6.59 86.85 0.57 2.39 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.42 8.09 -2.39 -0.02 0.40 16 34 H 0.07 0.35 7.98 -2.38 -0.02 0.33 16 35 H 0.09 0.27 7.98 -2.39 -0.02 0.25 16 36 H 0.10 0.24 5.52 -2.39 -0.01 0.22 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.11 -0.16 7.94 -2.39 -0.02 -0.17 16 39 H 0.11 -0.02 6.04 -2.38 -0.01 -0.04 16 40 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.10 0.68 6.31 -2.39 -0.02 0.67 16 42 H 0.23 3.98 6.91 -2.91 -0.02 3.96 16 43 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.37 20.99 7.66 -92.72 -0.71 20.28 16 46 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 47 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.07 1.58 8.09 -2.39 -0.02 1.56 16 Total: -1.00 -87.30 396.13 2.88 -84.42 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.27 Total: 18.95 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 7.13 Total: 9.21 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -5.56 Total: -134.71 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.98 Total: -25.73 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -87.30 2.88 -84.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098622627.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.643 kcal (2) G-P(sol) polarization free energy of solvation -87.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds