Wall clock time and date at job start Tue Mar 31 2020 21:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46952 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46812 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00124 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99910 * 179.97438 * 6 5 4 9 9 C 1.47417 * 125.65027 * 0.02636 * 8 6 5 10 10 C 1.54913 * 104.83356 * 204.09361 * 9 8 6 11 11 C 1.55152 * 101.57644 * 322.98821 * 10 9 8 12 12 H 1.09000 * 110.72238 * 276.95917 * 11 10 9 13 13 N 1.46501 * 110.71735 * 153.86622 * 11 10 9 14 14 C 1.35314 * 125.87188 * 326.45496 * 13 11 10 15 15 C 1.35344 * 106.18284 * 179.97438 * 14 13 11 16 16 C 1.50693 * 126.75788 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47494 * 94.99677 * 16 15 14 18 18 C 1.36936 * 120.00009 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99865 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99863 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00201 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00004 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47435 * 89.99972 * 22 20 18 24 24 H 1.48502 * 109.47347 * 209.99931 * 22 20 18 25 25 H 1.48504 * 109.47124 * 329.99767 * 22 20 18 26 26 N 1.33778 * 106.49191 * 0.02562 * 15 14 13 27 27 N 1.28631 * 108.88506 * 359.73398 * 26 15 14 28 28 C 1.47021 * 125.64744 * 179.72037 * 8 6 5 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 33 33 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 34 34 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 35 35 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 36 36 H 1.08996 * 109.47094 * 299.99658 * 5 4 3 37 37 H 1.08995 * 109.47498 * 60.00027 * 5 4 3 38 38 H 1.09010 * 110.36482 * 322.93081 * 9 8 6 39 39 H 1.08999 * 110.37023 * 85.25031 * 9 8 6 40 40 H 1.08997 * 111.00418 * 81.06299 * 10 9 8 41 41 H 1.09002 * 110.99679 * 204.87841 * 10 9 8 42 42 H 1.08004 * 126.90361 * 359.97438 * 14 13 11 43 43 H 1.08994 * 109.47466 * 215.00371 * 16 15 14 44 44 H 1.09007 * 109.47106 * 334.99831 * 16 15 14 45 45 H 0.96997 * 119.99875 * 0.02562 * 17 16 15 46 46 H 0.97000 * 120.00388 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.88184 * 298.39574 * 28 8 6 48 48 H 1.09007 * 109.88041 * 59.55568 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6600 2.4636 0.0000 7 8 6.1816 1.3687 -0.0009 8 7 6.4239 3.5740 0.0000 9 6 5.9240 4.9608 0.0006 10 6 7.0752 5.7977 -0.6110 11 6 8.3230 5.0848 -0.0261 12 1 8.5368 5.4453 0.9801 13 7 9.4841 5.2726 -0.8995 14 6 9.4546 5.3634 -2.2492 15 6 10.7381 5.5319 -2.6442 16 6 11.2337 5.6843 -4.0591 17 7 11.3571 7.1077 -4.3827 18 6 11.7926 7.4927 -5.6226 19 1 12.0447 6.7470 -6.3620 20 6 11.9101 8.8415 -5.9290 21 7 12.3291 9.2117 -7.1205 22 14 11.4747 10.1313 -4.6498 23 1 12.6813 10.4626 -3.8503 24 1 10.9798 11.3554 -5.3296 25 1 10.4166 9.6013 -3.7527 26 7 11.4805 5.5354 -1.5313 27 7 10.7072 5.3850 -0.5144 28 6 7.8938 3.6028 0.0058 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.8574 0.6437 0.8891 35 1 3.8567 0.6441 -0.8909 36 1 3.8357 3.1239 -0.8895 37 1 3.8364 3.1229 0.8904 38 1 5.0280 5.0413 -0.6151 39 1 5.7161 5.2888 1.0190 40 1 7.0658 5.7386 -1.6993 41 1 7.0245 6.8342 -0.2775 42 1 8.5821 5.3117 -2.8838 43 1 12.2071 5.2037 -4.1569 44 1 10.5268 5.2159 -4.7441 45 1 11.1303 7.7775 -3.7187 46 1 12.4108 10.1541 -7.3348 47 1 8.2703 3.1252 0.9104 48 1 8.2781 3.0883 -0.8750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098623211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:09 Heat of formation + Delta-G solvation = 41.566748 kcal Electronic energy + Delta-G solvation = -28273.640178 eV Core-core repulsion = 24173.970186 eV Total energy + Delta-G solvation = -4099.669992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.23091 -40.67351 -38.62569 -38.11866 -35.29712 -34.33013 -34.03750 -32.03709 -31.12203 -30.38985 -29.75091 -28.24394 -26.39636 -26.18204 -24.48181 -23.28419 -22.43190 -22.25015 -21.01763 -20.72419 -19.82950 -18.19471 -17.78694 -17.43784 -16.91339 -16.81853 -16.43992 -16.04887 -15.80101 -15.39565 -15.06618 -14.76994 -14.50865 -14.23837 -14.20302 -13.99877 -13.44314 -13.23088 -13.02395 -12.97025 -12.69664 -12.61094 -12.56679 -12.40059 -12.22596 -12.17515 -11.71152 -11.56356 -11.52558 -11.44212 -11.14110 -10.89092 -10.60781 -10.41372 -10.20218 -10.19028 -10.00645 -9.60076 -9.31027 -9.06166 -8.90999 -7.24500 -5.76533 -3.12365 1.58579 1.91999 2.10915 2.47679 2.71771 3.21461 3.37312 3.42902 3.46134 3.55216 3.64837 4.07254 4.13972 4.26249 4.36158 4.45951 4.50951 4.59720 4.60253 4.65745 4.72714 4.77000 4.86222 4.86513 4.89272 4.97169 5.01959 5.06424 5.14980 5.17103 5.18533 5.25284 5.36489 5.49636 5.55282 5.56179 5.68946 5.71611 5.75358 6.22063 6.53942 6.57746 6.62465 6.65786 6.83406 7.60472 7.97994 8.41997 8.64850 9.20007 9.92450 10.12530 11.41569 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.001896 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.044656 B =14766.245702 C =15331.944944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.106 4.106 5 C -0.132 4.132 6 C 0.532 3.468 7 O -0.529 6.529 8 N -0.622 5.622 9 C 0.102 3.898 10 C -0.145 4.145 11 C 0.137 3.863 12 H 0.131 0.869 13 N -0.294 5.294 14 C -0.041 4.041 15 C -0.008 4.008 16 C 0.237 3.763 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.094 0.906 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.251 5.251 27 N -0.091 5.091 28 C 0.101 3.899 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.189 0.811 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.362 0.638 46 H 0.260 0.740 47 H 0.087 0.913 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.736 -12.507 19.463 35.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.144 4.144 5 C -0.172 4.172 6 C 0.321 3.679 7 O -0.404 6.404 8 N -0.358 5.358 9 C -0.022 4.022 10 C -0.184 4.184 11 C 0.033 3.967 12 H 0.149 0.851 13 N -0.088 5.088 14 C -0.191 4.191 15 C -0.146 4.146 16 C 0.108 3.892 17 N -0.395 5.395 18 C -0.374 4.374 19 H 0.111 0.889 20 C -0.189 4.189 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.207 1.207 26 N -0.118 5.118 27 N -0.069 5.069 28 C -0.023 4.023 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.206 0.794 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.195 0.805 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.344 -13.353 20.437 35.190 hybrid contribution -1.329 1.442 0.036 1.961 sum -26.673 -11.911 20.473 35.672 Atomic orbital electron populations 1.22762 0.80794 1.02967 1.00009 1.87897 1.19861 1.27823 1.95415 1.22529 0.93851 0.84913 1.00250 1.21245 0.92406 0.95550 1.05237 1.21528 0.91053 0.99758 1.04820 1.20349 0.89199 0.82590 0.75778 1.90770 1.74909 1.25799 1.48910 1.48427 1.06229 1.06422 1.74721 1.22397 0.97598 0.80268 1.01893 1.23312 0.91624 1.00528 1.02912 1.22512 0.82684 0.96273 0.95230 0.85119 1.47135 1.07564 1.48073 1.06069 1.23320 1.01329 1.10064 0.84415 1.22533 0.89860 1.04571 0.97616 1.18926 0.98743 0.87644 0.83848 1.42643 1.81900 1.00538 1.14463 1.19048 1.36586 0.92701 0.89020 0.88865 1.24627 1.01249 0.96612 0.96364 1.69695 1.52750 1.15706 1.19871 0.86547 0.78359 0.82100 0.81485 1.20961 1.21729 1.20662 1.75128 1.25458 1.15411 0.95843 1.78309 0.86570 1.19506 1.22533 1.22191 0.80974 0.94723 1.04417 0.93957 0.94035 0.89490 0.93121 0.93202 0.90152 0.90055 0.88375 0.88458 0.89085 0.90042 0.88523 0.87702 0.79447 0.93349 0.93587 0.80515 0.93027 0.89479 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.47 16 3 C 0.06 0.33 5.94 37.16 0.22 0.55 16 4 C -0.11 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C -0.13 -0.60 4.71 -27.88 -0.13 -0.73 16 6 C 0.53 4.45 7.85 -10.98 -0.09 4.36 16 7 O -0.53 -6.87 16.31 5.56 0.09 -6.78 16 8 N -0.62 -4.16 3.33 -170.51 -0.57 -4.73 16 9 C 0.10 0.32 6.69 -2.53 -0.02 0.31 16 10 C -0.14 -0.71 6.49 -24.58 -0.16 -0.87 16 11 C 0.14 1.04 3.97 -66.10 -0.26 0.78 16 12 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 13 N -0.29 -3.68 3.28 -52.98 -0.17 -3.85 16 14 C -0.04 -0.56 10.59 -17.05 -0.18 -0.74 16 15 C -0.01 -0.15 6.61 -82.78 -0.55 -0.69 16 16 C 0.24 4.74 6.82 -5.20 -0.04 4.70 16 17 N -0.75 -18.26 5.40 -61.09 -0.33 -18.59 16 18 C -0.24 -6.94 10.47 -15.06 -0.16 -7.09 16 19 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -29.28 13.97 55.49 0.78 -28.51 16 22 Si 0.88 22.48 27.74 -169.99 -4.71 17.77 16 23 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 26 N -0.25 -4.80 12.41 33.28 0.41 -4.38 16 27 N -0.09 -1.48 13.16 60.35 0.79 -0.69 16 28 C 0.10 0.83 6.63 -3.06 -0.02 0.81 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.10 0.26 7.85 -51.93 -0.41 -0.14 16 37 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 0.13 7.48 -51.92 -0.39 -0.26 16 39 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 40 H 0.10 0.54 6.39 -51.93 -0.33 0.20 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.19 1.95 7.01 -52.48 -0.37 1.58 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.36 8.87 5.52 -40.82 -0.23 8.65 16 46 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 LS Contribution 397.73 15.07 5.99 5.99 Total: -1.00 -38.43 397.73 -6.23 -44.67 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.64 Total: 0.63 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.49 Total: 1.94 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.91 Total: -60.75 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.29 Total: -10.25 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.43 -6.23 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098623211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.232 kcal (2) G-P(sol) polarization free energy of solvation -38.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds