Wall clock time and date at job start Tue Mar 31 2020 21:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46952 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.46812 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00124 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99910 * 179.97438 * 6 5 4 9 9 C 1.47417 * 125.65027 * 0.02636 * 8 6 5 10 10 C 1.54913 * 104.83356 * 204.09361 * 9 8 6 11 11 C 1.55152 * 101.57644 * 322.98821 * 10 9 8 12 12 H 1.09000 * 110.72238 * 276.95917 * 11 10 9 13 13 N 1.46501 * 110.71735 * 153.86622 * 11 10 9 14 14 C 1.35314 * 125.87188 * 326.45496 * 13 11 10 15 15 C 1.35344 * 106.18284 * 179.97438 * 14 13 11 16 16 C 1.50693 * 126.75788 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47494 * 94.99677 * 16 15 14 18 18 C 1.36936 * 120.00009 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99865 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99863 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00201 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00004 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47435 * 89.99972 * 22 20 18 24 24 H 1.48502 * 109.47347 * 209.99931 * 22 20 18 25 25 H 1.48504 * 109.47124 * 329.99767 * 22 20 18 26 26 N 1.33778 * 106.49191 * 0.02562 * 15 14 13 27 27 N 1.28631 * 108.88506 * 359.73398 * 26 15 14 28 28 C 1.47021 * 125.64744 * 179.72037 * 8 6 5 29 29 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 31 31 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 33 33 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 34 34 H 1.08997 * 109.46502 * 300.00085 * 4 3 2 35 35 H 1.08998 * 109.46733 * 60.00191 * 4 3 2 36 36 H 1.08996 * 109.47094 * 299.99658 * 5 4 3 37 37 H 1.08995 * 109.47498 * 60.00027 * 5 4 3 38 38 H 1.09010 * 110.36482 * 322.93081 * 9 8 6 39 39 H 1.08999 * 110.37023 * 85.25031 * 9 8 6 40 40 H 1.08997 * 111.00418 * 81.06299 * 10 9 8 41 41 H 1.09002 * 110.99679 * 204.87841 * 10 9 8 42 42 H 1.08004 * 126.90361 * 359.97438 * 14 13 11 43 43 H 1.08994 * 109.47466 * 215.00371 * 16 15 14 44 44 H 1.09007 * 109.47106 * 334.99831 * 16 15 14 45 45 H 0.96997 * 119.99875 * 0.02562 * 17 16 15 46 46 H 0.97000 * 120.00388 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.88184 * 298.39574 * 28 8 6 48 48 H 1.09007 * 109.88041 * 59.55568 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6600 2.4636 0.0000 7 8 6.1816 1.3687 -0.0009 8 7 6.4239 3.5740 0.0000 9 6 5.9240 4.9608 0.0006 10 6 7.0752 5.7977 -0.6110 11 6 8.3230 5.0848 -0.0261 12 1 8.5368 5.4453 0.9801 13 7 9.4841 5.2726 -0.8995 14 6 9.4546 5.3634 -2.2492 15 6 10.7381 5.5319 -2.6442 16 6 11.2337 5.6843 -4.0591 17 7 11.3571 7.1077 -4.3827 18 6 11.7926 7.4927 -5.6226 19 1 12.0447 6.7470 -6.3620 20 6 11.9101 8.8415 -5.9290 21 7 12.3291 9.2117 -7.1205 22 14 11.4747 10.1313 -4.6498 23 1 12.6813 10.4626 -3.8503 24 1 10.9798 11.3554 -5.3296 25 1 10.4166 9.6013 -3.7527 26 7 11.4805 5.5354 -1.5313 27 7 10.7072 5.3850 -0.5144 28 6 7.8938 3.6028 0.0058 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.8574 0.6437 0.8891 35 1 3.8567 0.6441 -0.8909 36 1 3.8357 3.1239 -0.8895 37 1 3.8364 3.1229 0.8904 38 1 5.0280 5.0413 -0.6151 39 1 5.7161 5.2888 1.0190 40 1 7.0658 5.7386 -1.6993 41 1 7.0245 6.8342 -0.2775 42 1 8.5821 5.3117 -2.8838 43 1 12.2071 5.2037 -4.1569 44 1 10.5268 5.2159 -4.7441 45 1 11.1303 7.7775 -3.7187 46 1 12.4108 10.1541 -7.3348 47 1 8.2703 3.1252 0.9104 48 1 8.2781 3.0883 -0.8750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098623211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:07 Heat of formation + Delta-G solvation = 11.755660 kcal Electronic energy + Delta-G solvation = -28274.932884 eV Core-core repulsion = 24173.970186 eV Total energy + Delta-G solvation = -4100.962698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.38688 -41.26438 -39.15256 -38.68980 -37.01624 -35.30500 -34.64103 -33.84388 -32.10741 -31.77051 -30.31504 -28.70242 -27.92876 -26.76025 -25.12128 -24.45833 -23.87912 -22.73431 -22.32235 -21.61586 -20.33138 -19.92361 -18.69337 -18.17681 -17.44762 -17.36468 -17.32760 -16.81176 -16.52095 -16.37684 -16.10266 -15.87795 -15.75731 -15.32212 -14.98662 -14.77453 -14.65907 -14.37819 -14.06214 -13.91835 -13.63981 -13.44054 -13.29523 -13.01776 -12.98167 -12.92992 -12.86954 -12.65234 -12.61094 -12.12069 -12.06248 -11.96817 -11.87706 -11.86382 -11.80779 -11.21201 -11.02842 -10.98773 -10.59480 -10.31604 -9.85670 -9.32803 -8.01989 -5.36152 0.49017 1.12543 1.34157 1.38809 1.41728 1.47776 1.52936 1.87570 2.48332 2.85168 3.02528 3.10994 3.27794 3.35163 3.60106 3.67875 3.78778 3.83352 3.91010 3.97949 4.08044 4.13929 4.22034 4.29025 4.34480 4.44925 4.49238 4.52136 4.54262 4.55649 4.59067 4.63692 4.72482 4.81449 4.83032 4.88126 4.95631 5.05912 5.06414 5.11228 5.13339 5.25663 5.59668 5.75199 6.20985 6.26652 6.33586 7.03174 7.05549 7.42665 7.79747 8.00412 9.19075 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.001896 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.044656 B =14766.245702 C =15331.944944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.061 3.939 4 C -0.105 4.105 5 C -0.119 4.119 6 C 0.524 3.476 7 O -0.590 6.590 8 N -0.617 5.617 9 C 0.102 3.898 10 C -0.139 4.139 11 C 0.130 3.870 12 H 0.150 0.850 13 N -0.278 5.278 14 C -0.014 4.014 15 C -0.040 4.040 16 C 0.239 3.761 17 N -0.751 5.751 18 C -0.234 4.234 19 H 0.065 0.935 20 C -0.057 4.057 21 N -0.980 5.980 22 Si 0.953 3.047 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.254 1.254 26 N -0.294 5.294 27 N -0.106 5.106 28 C 0.104 3.896 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.225 0.775 43 H 0.033 0.967 44 H 0.066 0.934 45 H 0.364 0.636 46 H 0.259 0.741 47 H 0.078 0.922 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.556 -10.785 21.587 38.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.015 4.015 4 C -0.143 4.143 5 C -0.158 4.158 6 C 0.315 3.685 7 O -0.469 6.469 8 N -0.352 5.352 9 C -0.019 4.019 10 C -0.178 4.178 11 C 0.028 3.972 12 H 0.167 0.833 13 N -0.071 5.071 14 C -0.165 4.165 15 C -0.178 4.178 16 C 0.111 3.889 17 N -0.397 5.397 18 C -0.365 4.365 19 H 0.083 0.917 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.781 3.219 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.179 1.179 26 N -0.161 5.161 27 N -0.084 5.084 28 C -0.021 4.021 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.241 0.759 43 H 0.051 0.949 44 H 0.084 0.916 45 H 0.196 0.804 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.205 -11.633 22.621 38.729 hybrid contribution -0.174 0.749 -0.599 0.974 sum -29.379 -10.884 22.023 38.296 Atomic orbital electron populations 1.22910 0.79361 1.03615 1.01107 1.87852 1.21621 1.29555 1.95689 1.22620 0.92524 0.84342 1.01998 1.21188 0.93784 0.96602 1.02760 1.21550 0.87654 0.98865 1.07763 1.21125 0.90811 0.81972 0.74577 1.90749 1.76162 1.28235 1.51795 1.48500 1.05299 1.07833 1.73576 1.22739 0.97711 0.77315 1.04153 1.23419 0.90031 1.01571 1.02786 1.22994 0.82134 0.96326 0.95730 0.83278 1.47487 1.07697 1.45598 1.06368 1.23680 1.00839 1.06946 0.85077 1.22233 0.91541 1.07708 0.96314 1.18897 0.98623 0.85142 0.86194 1.42632 1.81583 1.02535 1.12922 1.19046 1.35232 0.92261 0.89954 0.91691 1.25410 1.02042 0.98945 0.98532 1.69864 1.54823 1.16074 1.22244 0.85444 0.78457 0.79058 0.78984 1.21469 1.21520 1.17902 1.75062 1.27230 1.17106 0.96722 1.78205 0.87908 1.20298 1.21980 1.22005 0.82477 0.94852 1.02787 0.92932 0.92764 0.89263 0.91427 0.91138 0.92528 0.92836 0.85398 0.85054 0.86079 0.87253 0.88767 0.85674 0.75882 0.94924 0.91609 0.80372 0.93227 0.90366 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.43 -6.38 10.70 -148.98 -1.59 -7.97 16 3 C 0.06 0.53 5.94 71.99 0.43 0.96 16 4 C -0.11 -1.28 4.87 30.60 0.15 -1.14 16 5 C -0.12 -0.68 4.71 29.85 0.14 -0.54 16 6 C 0.52 7.87 7.85 87.66 0.69 8.56 16 7 O -0.59 -15.76 16.31 -3.02 -0.05 -15.81 16 8 N -0.62 -6.45 3.33 -811.77 -2.70 -9.15 16 9 C 0.10 0.10 6.69 86.86 0.58 0.68 16 10 C -0.14 -0.66 6.49 31.99 0.21 -0.45 16 11 C 0.13 1.57 3.97 46.18 0.18 1.75 16 12 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 13 N -0.28 -6.31 3.28 -321.54 -1.06 -7.37 16 14 C -0.01 -0.35 10.59 83.49 0.88 0.54 16 15 C -0.04 -1.37 6.61 41.59 0.28 -1.10 16 16 C 0.24 9.49 6.82 85.63 0.58 10.08 16 17 N -0.75 -36.13 5.40 -347.19 -1.87 -38.00 16 18 C -0.23 -13.46 10.47 84.03 0.88 -12.58 16 19 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 20 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 21 N -0.98 -62.68 13.97 21.65 0.30 -62.38 16 22 Si 0.95 46.09 27.74 68.60 1.90 47.99 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 26 N -0.29 -11.18 12.41 -48.61 -0.60 -11.79 16 27 N -0.11 -3.34 13.16 37.02 0.49 -2.85 16 28 C 0.10 1.55 6.63 86.73 0.58 2.13 16 29 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.59 8.14 -2.38 -0.02 0.58 16 32 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 35 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 36 H 0.13 0.03 7.85 -2.39 -0.02 0.01 16 37 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.12 -0.49 7.48 -2.38 -0.02 -0.51 16 39 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.09 0.55 6.39 -2.39 -0.02 0.54 16 41 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.22 3.73 7.01 -2.91 -0.02 3.71 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.36 17.18 5.52 -92.71 -0.51 16.67 16 46 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 47 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.05 1.12 8.03 -2.38 -0.02 1.10 16 Total: -1.00 -89.30 397.73 2.50 -86.80 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.39 Total: 13.13 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 7.29 Total: 7.40 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -5.44 Total: -131.54 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -1.64 Total: -23.79 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -89.30 2.50 -86.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098623211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.556 kcal (2) G-P(sol) polarization free energy of solvation -89.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds