Wall clock time and date at job start Tue Mar 31 2020 20:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42899 * 109.47304 * 2 1 4 4 C 1.42898 * 114.00169 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47431 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47438 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47126 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99897 * 359.72195 * 7 6 5 9 9 N 1.34773 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00240 * 179.72093 * 9 7 6 11 11 C 1.50709 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75281 * 94.71435 * 11 10 9 13 13 N 1.35307 * 106.17571 * 179.85248 * 12 11 10 14 14 C 1.46498 * 125.87256 * 180.18707 * 13 12 11 15 15 C 1.53953 * 113.74065 * 14.03254 * 14 13 12 16 16 N 1.47814 * 86.03550 * 222.08605 * 15 14 13 17 17 C 1.36938 * 134.45258 * 204.63848 * 16 15 14 18 18 H 1.08004 * 119.99809 * 173.35146 * 17 16 15 19 19 C 1.38814 * 120.00108 * 353.35646 * 17 16 15 20 20 N 1.31619 * 119.99894 * 5.05940 * 19 17 16 21 21 Si 1.86797 * 119.99680 * 185.06207 * 19 17 16 22 22 H 1.48500 * 109.47256 * 94.98917 * 21 19 17 23 23 H 1.48502 * 109.47006 * 214.98490 * 21 19 17 24 24 H 1.48496 * 109.47407 * 334.98304 * 21 19 17 25 25 C 1.47575 * 91.05321 * 24.54975 * 16 15 14 26 26 N 1.28722 * 108.26411 * 0.41697 * 13 12 11 27 27 N 1.28630 * 110.17555 * 359.73383 * 26 13 12 28 28 H 1.09005 * 109.47137 * 299.99602 * 1 2 3 29 29 H 1.09000 * 109.47534 * 59.99755 * 1 2 3 30 30 H 1.09003 * 109.47531 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47137 * 240.00398 * 2 1 3 32 32 H 1.09000 * 109.47534 * 120.00245 * 2 1 3 33 33 H 1.09003 * 109.47041 * 60.00078 * 4 3 2 34 34 H 1.09003 * 109.47389 * 300.00077 * 4 3 2 35 35 H 1.09003 * 109.47112 * 59.99916 * 5 4 3 36 36 H 1.09000 * 109.47056 * 299.99859 * 5 4 3 37 37 H 1.09003 * 109.47038 * 59.99871 * 6 5 4 38 38 H 1.09000 * 109.46882 * 299.99965 * 6 5 4 39 39 H 0.97006 * 119.99964 * 359.72386 * 9 7 6 40 40 H 1.08999 * 109.47211 * 299.99637 * 10 9 7 41 41 H 1.09003 * 109.47239 * 60.00387 * 10 9 7 42 42 H 1.08006 * 126.91079 * 359.97438 * 12 11 10 43 43 H 1.09001 * 112.94786 * 145.62660 * 14 13 12 44 44 H 1.09004 * 113.76439 * 336.35129 * 15 14 13 45 45 H 1.08994 * 113.76870 * 107.74630 * 15 14 13 46 46 H 0.97004 * 119.99723 * 180.02562 * 20 19 17 47 47 H 1.08996 * 113.77255 * 221.15145 * 25 16 15 48 48 H 1.09005 * 113.87280 * 89.76648 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3506 3.0591 -0.0012 7 6 5.7392 4.5151 0.0002 8 8 4.8808 5.3718 -0.0031 9 7 7.0407 4.8653 -0.0012 10 6 7.4184 6.2807 -0.0060 11 6 8.9208 6.3997 -0.0072 12 6 9.7205 6.5489 -1.0889 13 7 10.9864 6.6148 -0.6155 14 6 12.1974 6.7800 -1.4232 15 6 11.9206 7.2185 -2.8728 16 7 12.9588 6.2397 -3.2586 17 6 13.8006 6.1069 -4.3305 18 1 14.5612 5.3401 -4.3280 19 6 13.6764 6.9578 -5.4202 20 7 12.8175 7.9544 -5.3824 21 14 14.7283 6.6884 -6.9401 22 1 13.9693 5.8842 -7.9313 23 1 15.0830 8.0017 -7.5358 24 1 15.9690 5.9654 -6.5618 25 6 12.7256 5.4648 -2.0245 26 7 10.9442 6.5026 0.6661 27 7 9.7267 6.3728 1.0602 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8332 0.9767 -0.8908 34 1 3.8340 0.9764 0.8892 35 1 3.4230 3.4213 0.8906 36 1 3.4223 3.4224 -0.8894 37 1 5.7526 2.5762 -0.8919 38 1 5.7541 2.5749 0.8881 39 1 7.7273 4.1800 0.0011 40 1 7.0156 6.7612 -0.8977 41 1 7.0158 6.7673 0.8824 42 1 9.4104 6.6060 -2.1219 43 1 12.9636 7.3731 -0.9240 44 1 10.9219 6.9620 -3.2262 45 1 12.1931 8.2537 -3.0782 46 1 12.7305 8.5488 -6.1440 47 1 13.6395 5.1025 -1.5539 48 1 11.9642 4.6914 -2.1265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107131908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:42 Heat of formation + Delta-G solvation = 60.421626 kcal Electronic energy + Delta-G solvation = -27657.312167 eV Core-core repulsion = 23558.459784 eV Total energy + Delta-G solvation = -4098.852383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.10728 -39.85651 -38.43692 -38.36884 -35.35456 -34.13019 -33.44088 -32.04472 -31.56464 -31.12166 -28.09109 -27.81131 -25.97447 -25.26647 -24.41045 -23.17215 -22.21394 -21.94945 -21.09924 -20.44641 -19.66332 -17.81204 -17.29118 -16.85029 -16.83167 -16.64060 -16.30742 -15.83144 -15.56032 -15.14027 -14.85047 -14.74059 -14.47576 -14.11946 -13.76839 -13.48856 -13.37192 -13.04093 -12.96504 -12.72314 -12.27890 -12.18430 -12.12785 -11.92907 -11.87601 -11.86096 -11.41969 -11.28999 -11.20923 -11.13231 -11.01141 -10.98169 -10.56606 -10.25420 -10.12736 -9.95763 -9.94342 -9.58891 -9.20371 -9.12999 -9.07855 -7.28547 -6.09754 -3.44389 1.78011 2.38903 2.51284 2.60591 3.10228 3.23577 3.29541 3.31404 3.51001 4.19071 4.32371 4.47954 4.59971 4.66262 4.67872 4.68168 4.70023 4.85219 4.90050 4.96228 5.02892 5.03878 5.11890 5.13481 5.17375 5.24256 5.35258 5.36582 5.49894 5.50267 5.59549 5.71373 5.72643 5.80787 5.97354 6.01553 6.08011 6.12597 6.24467 6.26871 6.50521 6.73777 6.85541 6.98867 7.13389 7.35052 7.63695 8.07605 8.69938 8.71643 9.37830 10.15927 11.07951 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.001736 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.899739 B =16127.697022 C =17517.250149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.062 3.938 5 C -0.103 4.103 6 C -0.138 4.138 7 C 0.515 3.485 8 O -0.540 6.540 9 N -0.724 5.724 10 C 0.215 3.785 11 C -0.063 4.063 12 C -0.014 4.014 13 N -0.265 5.265 14 C 0.076 3.924 15 C 0.166 3.834 16 N -0.598 5.598 17 C -0.235 4.235 18 H 0.088 0.912 19 C 0.001 3.999 20 N -0.917 5.917 21 Si 0.918 3.082 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.267 5.267 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.403 0.597 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 -12.512 9.863 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.141 4.141 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.417 6.417 9 N -0.377 5.377 10 C 0.090 3.910 11 C -0.202 4.202 12 C -0.168 4.168 13 N -0.057 5.057 14 C -0.026 4.026 15 C 0.039 3.961 16 N -0.324 5.324 17 C -0.362 4.362 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.562 5.562 21 Si 0.747 3.253 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.008 4.008 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.237 0.763 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.208 0.792 43 H 0.150 0.850 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.965 -11.651 10.831 22.538 hybrid contribution 0.672 -0.663 -2.002 2.213 sum -15.293 -12.313 8.829 21.528 Atomic orbital electron populations 1.21749 0.93727 1.02218 1.03258 1.22458 0.95675 0.83819 1.00025 1.87897 1.21157 1.26380 1.95424 1.22505 0.81328 0.97439 1.00166 1.21211 0.93250 0.94602 1.05067 1.21546 0.97612 0.93873 1.04797 1.20540 0.82105 0.91357 0.75866 1.90727 1.49371 1.52259 1.49336 1.46077 1.07495 1.08550 1.75539 1.19280 0.85940 0.82222 1.03586 1.21736 0.96924 1.11756 0.89813 1.23508 0.84137 1.07153 1.02014 1.47916 1.08411 1.43372 1.06027 1.25321 0.83426 1.02289 0.91546 1.22694 0.93073 0.97716 0.82567 1.45648 1.40655 1.25326 1.20820 1.19006 1.09119 1.15499 0.92540 0.89455 1.24881 0.99043 0.97546 0.98213 1.69781 1.38003 1.17246 1.31148 0.86022 0.79425 0.77345 0.82504 1.21285 1.21399 1.20268 1.22931 0.98320 0.92093 0.87424 1.78275 1.15552 1.19310 0.93670 1.75019 0.95716 1.16584 1.26088 0.91811 0.91776 0.91130 0.93417 0.93451 0.93228 0.93286 0.90234 0.90182 0.88534 0.88622 0.76284 0.89625 0.89769 0.79211 0.85049 0.93905 0.89419 0.93059 0.92012 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.15 0.38 -0.49 16 2 C 0.06 0.38 6.66 37.15 0.25 0.63 16 3 O -0.39 -3.69 10.34 -35.23 -0.36 -4.06 16 4 C 0.06 0.46 5.94 37.16 0.22 0.68 16 5 C -0.10 -0.89 4.87 -26.73 -0.13 -1.02 16 6 C -0.14 -1.00 5.70 -27.88 -0.16 -1.16 16 7 C 0.51 5.57 7.83 -10.99 -0.09 5.48 16 8 O -0.54 -7.94 15.98 5.56 0.09 -7.86 16 9 N -0.72 -7.37 5.55 -61.47 -0.34 -7.71 16 10 C 0.21 2.51 6.23 -5.19 -0.03 2.47 16 11 C -0.06 -0.87 6.62 -82.77 -0.55 -1.42 16 12 C -0.01 -0.20 10.72 -17.05 -0.18 -0.39 16 13 N -0.26 -4.21 3.54 -56.29 -0.20 -4.41 16 14 C 0.08 1.28 5.14 -70.13 -0.36 0.92 16 15 C 0.17 3.34 6.81 -2.83 -0.02 3.32 16 16 N -0.60 -13.53 3.70 -177.86 -0.66 -14.19 16 17 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 18 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16 19 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 20 N -0.92 -24.74 11.51 55.49 0.64 -24.11 16 21 Si 0.92 20.45 29.56 -169.99 -5.02 15.42 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 C 0.12 2.16 8.74 -2.97 -0.03 2.13 16 26 N -0.09 -1.52 13.17 60.35 0.79 -0.72 16 27 N -0.27 -4.35 12.41 33.29 0.41 -3.93 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.49 8.46 -40.82 -0.35 3.15 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.19 2.38 6.74 -52.48 -0.35 2.02 16 43 H 0.13 2.14 8.14 -51.93 -0.42 1.71 16 44 H 0.04 0.84 6.31 -51.93 -0.33 0.52 16 45 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 46 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -31.47 404.01 -7.23 -38.70 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.72 Total: 1.79 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.95 Total: 4.98 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.65 Total: -55.07 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.28 Total: -11.91 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.47 -7.23 -38.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107131908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.124 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds