Wall clock time and date at job start Tue Mar 31 2020 20:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42899 * 109.47304 * 2 1 4 4 C 1.42898 * 114.00169 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47431 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47438 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47126 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99897 * 359.72195 * 7 6 5 9 9 N 1.34773 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00240 * 179.72093 * 9 7 6 11 11 C 1.50709 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75281 * 94.71435 * 11 10 9 13 13 N 1.35307 * 106.17571 * 179.85248 * 12 11 10 14 14 C 1.46498 * 125.87256 * 180.18707 * 13 12 11 15 15 C 1.53953 * 113.74065 * 14.03254 * 14 13 12 16 16 N 1.47814 * 86.03550 * 222.08605 * 15 14 13 17 17 C 1.36938 * 134.45258 * 204.63848 * 16 15 14 18 18 H 1.08004 * 119.99809 * 173.35146 * 17 16 15 19 19 C 1.38814 * 120.00108 * 353.35646 * 17 16 15 20 20 N 1.31619 * 119.99894 * 5.05940 * 19 17 16 21 21 Si 1.86797 * 119.99680 * 185.06207 * 19 17 16 22 22 H 1.48500 * 109.47256 * 94.98917 * 21 19 17 23 23 H 1.48502 * 109.47006 * 214.98490 * 21 19 17 24 24 H 1.48496 * 109.47407 * 334.98304 * 21 19 17 25 25 C 1.47575 * 91.05321 * 24.54975 * 16 15 14 26 26 N 1.28722 * 108.26411 * 0.41697 * 13 12 11 27 27 N 1.28630 * 110.17555 * 359.73383 * 26 13 12 28 28 H 1.09005 * 109.47137 * 299.99602 * 1 2 3 29 29 H 1.09000 * 109.47534 * 59.99755 * 1 2 3 30 30 H 1.09003 * 109.47531 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47137 * 240.00398 * 2 1 3 32 32 H 1.09000 * 109.47534 * 120.00245 * 2 1 3 33 33 H 1.09003 * 109.47041 * 60.00078 * 4 3 2 34 34 H 1.09003 * 109.47389 * 300.00077 * 4 3 2 35 35 H 1.09003 * 109.47112 * 59.99916 * 5 4 3 36 36 H 1.09000 * 109.47056 * 299.99859 * 5 4 3 37 37 H 1.09003 * 109.47038 * 59.99871 * 6 5 4 38 38 H 1.09000 * 109.46882 * 299.99965 * 6 5 4 39 39 H 0.97006 * 119.99964 * 359.72386 * 9 7 6 40 40 H 1.08999 * 109.47211 * 299.99637 * 10 9 7 41 41 H 1.09003 * 109.47239 * 60.00387 * 10 9 7 42 42 H 1.08006 * 126.91079 * 359.97438 * 12 11 10 43 43 H 1.09001 * 112.94786 * 145.62660 * 14 13 12 44 44 H 1.09004 * 113.76439 * 336.35129 * 15 14 13 45 45 H 1.08994 * 113.76870 * 107.74630 * 15 14 13 46 46 H 0.97004 * 119.99723 * 180.02562 * 20 19 17 47 47 H 1.08996 * 113.77255 * 221.15145 * 25 16 15 48 48 H 1.09005 * 113.87280 * 89.76648 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3506 3.0591 -0.0012 7 6 5.7392 4.5151 0.0002 8 8 4.8808 5.3718 -0.0031 9 7 7.0407 4.8653 -0.0012 10 6 7.4184 6.2807 -0.0060 11 6 8.9208 6.3997 -0.0072 12 6 9.7205 6.5489 -1.0889 13 7 10.9864 6.6148 -0.6155 14 6 12.1974 6.7800 -1.4232 15 6 11.9206 7.2185 -2.8728 16 7 12.9588 6.2397 -3.2586 17 6 13.8006 6.1069 -4.3305 18 1 14.5612 5.3401 -4.3280 19 6 13.6764 6.9578 -5.4202 20 7 12.8175 7.9544 -5.3824 21 14 14.7283 6.6884 -6.9401 22 1 13.9693 5.8842 -7.9313 23 1 15.0830 8.0017 -7.5358 24 1 15.9690 5.9654 -6.5618 25 6 12.7256 5.4648 -2.0245 26 7 10.9442 6.5026 0.6661 27 7 9.7267 6.3728 1.0602 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8332 0.9767 -0.8908 34 1 3.8340 0.9764 0.8892 35 1 3.4230 3.4213 0.8906 36 1 3.4223 3.4224 -0.8894 37 1 5.7526 2.5762 -0.8919 38 1 5.7541 2.5749 0.8881 39 1 7.7273 4.1800 0.0011 40 1 7.0156 6.7612 -0.8977 41 1 7.0158 6.7673 0.8824 42 1 9.4104 6.6060 -2.1219 43 1 12.9636 7.3731 -0.9240 44 1 10.9219 6.9620 -3.2262 45 1 12.1931 8.2537 -3.0782 46 1 12.7305 8.5488 -6.1440 47 1 13.6395 5.1025 -1.5539 48 1 11.9642 4.6914 -2.1265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107131908.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:41 Heat of formation + Delta-G solvation = 38.699986 kcal Electronic energy + Delta-G solvation = -27658.254088 eV Core-core repulsion = 23558.459784 eV Total energy + Delta-G solvation = -4099.794304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.34969 -40.74336 -39.92986 -39.00331 -36.34904 -34.95225 -34.80572 -33.65607 -32.52035 -31.83536 -29.71023 -28.75581 -27.02337 -26.59848 -25.96785 -23.65880 -23.42302 -22.93075 -22.24433 -21.26877 -21.12620 -19.04151 -18.61926 -18.01621 -17.55828 -17.41965 -17.29698 -16.95779 -16.62998 -16.57008 -15.98580 -15.76022 -15.45614 -15.21852 -14.83938 -14.62952 -14.33751 -14.28808 -13.80070 -13.64070 -13.50434 -13.41517 -13.37581 -12.95875 -12.80515 -12.73324 -12.62666 -12.47991 -12.41199 -12.39463 -12.09257 -11.86009 -11.78692 -11.74229 -11.73546 -11.12199 -10.97828 -10.87373 -10.50971 -10.27620 -10.11352 -9.09170 -8.02263 -5.36489 0.57168 1.24572 1.29817 1.48165 1.50511 1.57834 1.67513 2.32518 2.43201 2.85975 3.06765 3.12885 3.32832 3.33767 3.73264 3.78051 3.92269 4.00407 4.02914 4.13412 4.16483 4.19267 4.32459 4.44297 4.50146 4.51375 4.55099 4.56218 4.59190 4.62845 4.70602 4.75728 4.89841 4.93053 5.02426 5.03677 5.04819 5.09143 5.16494 5.24670 5.29925 5.37770 5.39609 5.66629 5.76977 6.33178 6.54358 6.80345 7.25052 7.46225 7.48871 8.34532 9.15137 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.001736 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.899739 B =16127.697022 C =17517.250149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.420 6.420 4 C 0.062 3.938 5 C -0.100 4.100 6 C -0.128 4.128 7 C 0.513 3.487 8 O -0.585 6.585 9 N -0.716 5.716 10 C 0.218 3.782 11 C -0.049 4.049 12 C -0.013 4.013 13 N -0.268 5.268 14 C 0.104 3.896 15 C 0.168 3.832 16 N -0.627 5.627 17 C -0.240 4.240 18 H 0.091 0.909 19 C -0.053 4.053 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.125 3.875 26 N -0.108 5.108 27 N -0.281 5.281 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.413 0.587 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.207 0.793 43 H 0.138 0.862 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.253 0.747 47 H 0.076 0.924 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 -14.667 10.207 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.340 6.340 4 C -0.014 4.014 5 C -0.138 4.138 6 C -0.167 4.167 7 C 0.301 3.699 8 O -0.465 6.465 9 N -0.369 5.369 10 C 0.093 3.907 11 C -0.188 4.188 12 C -0.166 4.166 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.041 3.959 16 N -0.354 5.354 17 C -0.367 4.367 18 H 0.109 0.891 19 C -0.248 4.248 20 N -0.594 5.594 21 Si 0.805 3.195 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.191 1.191 25 C -0.001 4.001 26 N -0.087 5.087 27 N -0.148 5.148 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.249 0.751 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.223 0.777 43 H 0.156 0.844 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.753 -13.853 11.218 23.789 hybrid contribution 0.532 -0.018 -2.020 2.088 sum -15.221 -13.871 9.198 22.554 Atomic orbital electron populations 1.21784 0.93399 1.03305 1.02495 1.22647 0.96088 0.82844 1.01032 1.87864 1.22333 1.28146 1.95659 1.22559 0.80698 0.96448 1.01666 1.21141 0.94266 0.95406 1.03024 1.21551 0.96533 0.91395 1.07264 1.21182 0.81562 0.92560 0.74589 1.90715 1.50514 1.53813 1.51422 1.45989 1.07758 1.08099 1.75027 1.19230 0.84496 0.83337 1.03680 1.21925 0.97498 1.10428 0.88967 1.23822 0.83491 1.06442 1.02877 1.47717 1.08540 1.43937 1.05895 1.24727 0.83630 1.01341 0.90147 1.22567 0.92692 0.95933 0.84682 1.45874 1.40912 1.27167 1.21451 1.19342 1.09330 1.14823 0.93253 0.89089 1.25601 1.00637 0.97749 1.00771 1.69928 1.39837 1.18193 1.31414 0.85085 0.78397 0.76684 0.79309 1.21460 1.22206 1.19061 1.23021 0.99255 0.92436 0.85357 1.78283 1.16032 1.20479 0.93871 1.75008 0.95872 1.16949 1.26925 0.92517 0.92588 0.89125 0.92424 0.92317 0.91713 0.91612 0.92286 0.92335 0.85937 0.85983 0.75092 0.88889 0.90471 0.77652 0.84387 0.93442 0.92202 0.93781 0.90585 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.42 -7.65 10.34 -148.98 -1.54 -9.19 16 4 C 0.06 0.82 5.94 71.98 0.43 1.25 16 5 C -0.10 -1.65 4.87 30.59 0.15 -1.51 16 6 C -0.13 -1.55 5.70 29.85 0.17 -1.38 16 7 C 0.51 10.41 7.83 87.66 0.69 11.09 16 8 O -0.58 -17.18 15.98 -3.03 -0.05 -17.23 16 9 N -0.72 -13.20 5.55 -466.78 -2.59 -15.79 16 10 C 0.22 4.79 6.23 85.64 0.53 5.32 16 11 C -0.05 -1.26 6.62 41.60 0.28 -0.98 16 12 C -0.01 -0.34 10.72 83.49 0.89 0.55 16 13 N -0.27 -8.08 3.54 -332.01 -1.18 -9.26 16 14 C 0.10 3.35 5.14 46.75 0.24 3.59 16 15 C 0.17 6.68 6.81 86.44 0.59 7.26 16 16 N -0.63 -27.85 3.70 -716.62 -2.65 -30.50 16 17 C -0.24 -12.02 10.70 84.03 0.90 -11.12 16 18 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 19 C -0.05 -2.75 5.50 84.86 0.47 -2.28 16 20 N -0.95 -51.71 11.51 21.65 0.25 -51.46 16 21 Si 0.98 41.94 29.56 68.60 2.03 43.97 16 22 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.30 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 25 C 0.13 4.28 8.74 86.49 0.76 5.03 16 26 N -0.11 -3.51 13.17 37.02 0.49 -3.02 16 27 N -0.28 -8.70 12.41 -48.59 -0.60 -9.30 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.41 6.05 8.46 -92.70 -0.78 5.27 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.21 4.72 6.74 -2.91 -0.02 4.70 16 43 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 44 H 0.05 1.84 6.31 -2.38 -0.02 1.82 16 45 H 0.06 2.72 7.37 -2.39 -0.02 2.70 16 46 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -68.19 404.01 1.64 -66.55 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.18 Total: 18.20 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.31 Total: 17.04 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -6.28 Total: -119.33 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.59 Total: -26.42 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -68.19 1.64 -66.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107131908.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.251 kcal (2) G-P(sol) polarization free energy of solvation -68.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds