Wall clock time and date at job start Tue Mar 31 2020 21:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00375 * 2 1 4 4 C 1.53000 * 109.47264 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47438 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47126 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99897 * 359.72195 * 7 6 5 9 9 N 1.34773 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00240 * 179.72093 * 9 7 6 11 11 C 1.50709 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75281 * 94.71435 * 11 10 9 13 13 N 1.35307 * 106.17571 * 179.85248 * 12 11 10 14 14 C 1.46498 * 125.87256 * 180.18707 * 13 12 11 15 15 C 1.53953 * 113.74065 * 14.03254 * 14 13 12 16 16 N 1.47814 * 86.03550 * 222.08605 * 15 14 13 17 17 C 1.36938 * 134.45258 * 204.63848 * 16 15 14 18 18 H 1.08004 * 119.99809 * 173.35146 * 17 16 15 19 19 C 1.38814 * 120.00108 * 353.35646 * 17 16 15 20 20 N 1.31619 * 119.99894 * 5.05940 * 19 17 16 21 21 Si 1.86797 * 119.99680 * 185.06207 * 19 17 16 22 22 H 1.48500 * 109.47256 * 94.98917 * 21 19 17 23 23 H 1.48502 * 109.47006 * 214.98490 * 21 19 17 24 24 H 1.48496 * 109.47407 * 334.98304 * 21 19 17 25 25 C 1.47575 * 91.05321 * 24.54975 * 16 15 14 26 26 N 1.28722 * 108.26411 * 0.41697 * 13 12 11 27 27 N 1.28630 * 110.17555 * 359.73383 * 26 13 12 28 28 H 1.08996 * 109.47419 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47101 * 300.00092 * 1 2 3 30 30 H 1.08999 * 109.47045 * 60.00038 * 1 2 3 31 31 H 1.09003 * 109.47232 * 59.99957 * 3 2 1 32 32 H 1.09000 * 109.47109 * 299.99793 * 3 2 1 33 33 H 1.09003 * 109.47038 * 59.99830 * 4 3 2 34 34 H 1.09003 * 109.47386 * 299.99833 * 4 3 2 35 35 H 1.09003 * 109.47112 * 59.99916 * 5 4 3 36 36 H 1.09000 * 109.47056 * 299.99859 * 5 4 3 37 37 H 1.09003 * 109.47038 * 59.99871 * 6 5 4 38 38 H 1.09000 * 109.46882 * 299.99965 * 6 5 4 39 39 H 0.97006 * 119.99964 * 359.72386 * 9 7 6 40 40 H 1.08999 * 109.47211 * 299.99637 * 10 9 7 41 41 H 1.09003 * 109.47239 * 60.00387 * 10 9 7 42 42 H 1.08006 * 126.91079 * 359.97438 * 12 11 10 43 43 H 1.09001 * 112.94786 * 145.62660 * 14 13 12 44 44 H 1.09004 * 113.76439 * 336.35129 * 15 14 13 45 45 H 1.08994 * 113.76870 * 107.74630 * 15 14 13 46 46 H 0.97004 * 119.99723 * 180.02562 * 20 19 17 47 47 H 1.08996 * 113.77255 * 221.15145 * 25 16 15 48 48 H 1.09005 * 113.87280 * 89.76648 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 6 5.6831 2.4613 -0.0026 7 6 6.2961 3.8380 -0.0026 8 8 5.5833 4.8192 -0.0067 9 7 7.6364 3.9788 -0.0041 10 6 8.2324 5.3171 -0.0103 11 6 9.7348 5.1980 -0.0115 12 6 10.5479 5.2184 -1.0933 13 7 11.8084 5.0847 -0.6199 14 6 13.0302 5.0563 -1.4277 15 6 12.8258 5.5316 -2.8776 16 7 13.6969 4.4012 -3.2625 17 6 14.5072 4.1365 -4.3342 18 1 15.1376 3.2595 -4.3310 19 6 14.5185 4.9954 -5.4247 20 7 13.8272 6.1148 -5.3879 21 14 15.5147 4.5623 -6.9443 22 1 14.6384 3.8867 -7.9348 23 1 16.0717 5.8028 -7.5412 24 1 16.6260 3.6532 -6.5653 25 6 13.3447 3.6739 -2.0277 26 7 11.7492 4.9817 0.6618 27 7 10.5264 5.0456 1.0560 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8567 0.6437 -0.8909 34 1 3.8575 0.6435 0.8891 35 1 3.8367 3.1234 0.8887 36 1 3.8359 3.1229 -0.8913 37 1 6.0039 1.9203 -0.8928 38 1 6.0054 1.9205 0.8872 39 1 8.2066 3.1940 -0.0012 40 1 7.9102 5.8542 -0.9024 41 1 7.9115 5.8619 0.8776 42 1 10.2506 5.3227 -2.1264 43 1 13.8803 5.5219 -0.9289 44 1 11.7991 5.4353 -3.2309 45 1 13.2579 6.5108 -3.0840 46 1 13.8348 6.7148 -6.1501 47 1 14.1902 3.1725 -1.5567 48 1 12.4710 3.0299 -2.1290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107144258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:53 Heat of formation + Delta-G solvation = 59.135417 kcal Electronic energy + Delta-G solvation = -27629.398159 eV Core-core repulsion = 23530.490001 eV Total energy + Delta-G solvation = -4098.908157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.10340 -39.83962 -38.40832 -38.34139 -35.51275 -34.86626 -33.43970 -32.04691 -31.44170 -30.20870 -28.00579 -27.32964 -26.41085 -25.30961 -24.43914 -23.97499 -21.96994 -21.62972 -21.09261 -20.45103 -19.65925 -17.66072 -17.16535 -16.79233 -16.75421 -16.61659 -16.32983 -15.88946 -15.63752 -15.28680 -15.12803 -14.85745 -14.53758 -14.12131 -13.96689 -13.50224 -13.37066 -12.97060 -12.88713 -12.75461 -12.24846 -12.15385 -12.01684 -11.88442 -11.83048 -11.77431 -11.41506 -11.31827 -11.20503 -11.00746 -10.98962 -10.97784 -10.56207 -10.25003 -10.10450 -10.06530 -9.93784 -9.58422 -9.19823 -9.12458 -9.07355 -7.28108 -6.09376 -3.43963 1.78495 2.40276 2.52494 2.61002 3.19682 3.23981 3.29996 3.31737 3.48373 4.19498 4.32750 4.48431 4.55255 4.61172 4.67998 4.70518 4.85835 4.86667 4.90670 4.96367 4.99555 5.04293 5.11983 5.17654 5.23695 5.34289 5.35824 5.36683 5.39655 5.50938 5.57255 5.60217 5.72894 5.88656 5.99374 6.02185 6.08596 6.12921 6.25161 6.27344 6.50889 6.74077 6.75355 6.99269 7.13768 7.36232 7.64112 8.08380 8.70321 8.72061 9.38237 10.16354 11.08343 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.001725 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.251727 B =16231.342825 C =17640.266783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.140 4.140 7 C 0.514 3.486 8 O -0.544 6.544 9 N -0.724 5.724 10 C 0.215 3.785 11 C -0.063 4.063 12 C -0.014 4.014 13 N -0.265 5.265 14 C 0.076 3.924 15 C 0.166 3.834 16 N -0.598 5.598 17 C -0.235 4.235 18 H 0.088 0.912 19 C 0.001 3.999 20 N -0.917 5.917 21 Si 0.918 3.082 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.120 3.880 26 N -0.089 5.089 27 N -0.267 5.267 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.191 0.809 43 H 0.132 0.868 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.259 -7.504 9.878 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.139 4.139 6 C -0.180 4.180 7 C 0.300 3.700 8 O -0.421 6.421 9 N -0.377 5.377 10 C 0.090 3.910 11 C -0.202 4.202 12 C -0.168 4.168 13 N -0.057 5.057 14 C -0.026 4.026 15 C 0.040 3.960 16 N -0.325 5.325 17 C -0.361 4.361 18 H 0.106 0.894 19 C -0.197 4.197 20 N -0.562 5.562 21 Si 0.747 3.253 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.008 4.008 26 N -0.068 5.068 27 N -0.134 5.134 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.237 0.763 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.208 0.792 43 H 0.149 0.851 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.622 -7.041 10.845 22.671 hybrid contribution 0.151 -0.189 -2.003 2.017 sum -18.471 -7.229 8.843 21.717 Atomic orbital electron populations 1.22737 0.80999 1.02744 1.00027 1.87862 1.19762 1.28317 1.95455 1.22567 0.94215 0.84476 1.00419 1.21540 0.93039 0.97618 1.03529 1.21230 0.92801 0.95953 1.03940 1.21653 0.96871 0.94637 1.04821 1.20679 0.81839 0.91778 0.75676 1.90708 1.60959 1.40835 1.49630 1.46101 1.06787 1.09317 1.75463 1.19274 0.83847 0.84396 1.03516 1.21738 0.96909 1.11779 0.89814 1.23505 0.84177 1.07131 1.02006 1.47916 1.08456 1.43325 1.06022 1.25322 0.83322 1.02398 0.91543 1.22693 0.95151 0.95631 0.82572 1.45648 1.49789 1.16234 1.20780 1.19009 1.16082 1.08534 0.92511 0.89449 1.24880 0.99798 0.96805 0.98208 1.69781 1.44326 1.10982 1.31110 0.86021 0.79243 0.77525 0.82502 1.21285 1.21408 1.20265 1.22933 0.98504 0.91922 0.87415 1.78275 1.15220 1.19639 0.93665 1.75018 0.95913 1.16388 1.26093 0.89648 0.94067 0.94046 0.93181 0.93150 0.90914 0.90960 0.90921 0.90865 0.88578 0.88667 0.76259 0.89675 0.89819 0.79220 0.85051 0.93911 0.89423 0.93070 0.92005 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.50 10.70 -35.23 -0.38 -3.87 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 C -0.12 -0.82 5.58 -26.73 -0.15 -0.97 16 5 C -0.10 -0.76 4.50 -26.73 -0.12 -0.88 16 6 C -0.14 -1.01 5.70 -27.88 -0.16 -1.17 16 7 C 0.51 5.48 7.83 -10.99 -0.09 5.40 16 8 O -0.54 -7.78 15.98 5.56 0.09 -7.69 16 9 N -0.72 -7.40 5.55 -61.47 -0.34 -7.74 16 10 C 0.21 2.50 6.23 -5.19 -0.03 2.47 16 11 C -0.06 -0.87 6.62 -82.77 -0.55 -1.42 16 12 C -0.01 -0.20 10.72 -17.05 -0.18 -0.39 16 13 N -0.26 -4.22 3.54 -56.29 -0.20 -4.42 16 14 C 0.08 1.28 5.14 -70.13 -0.36 0.92 16 15 C 0.17 3.35 6.81 -2.83 -0.02 3.33 16 16 N -0.60 -13.56 3.70 -177.86 -0.66 -14.22 16 17 C -0.23 -5.97 10.70 -15.06 -0.16 -6.13 16 18 H 0.09 2.15 7.83 -52.48 -0.41 1.74 16 19 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 20 N -0.92 -24.77 11.51 55.49 0.64 -24.13 16 21 Si 0.92 20.48 29.56 -169.99 -5.02 15.46 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.12 2.16 8.74 -2.97 -0.03 2.14 16 26 N -0.09 -1.52 13.17 60.35 0.79 -0.73 16 27 N -0.27 -4.36 12.41 33.29 0.41 -3.95 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.57 8.46 -40.82 -0.35 3.22 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.19 2.38 6.74 -52.48 -0.35 2.03 16 43 H 0.13 2.14 8.14 -51.93 -0.42 1.72 16 44 H 0.04 0.85 6.31 -51.93 -0.33 0.52 16 45 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 46 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -31.37 403.66 -6.90 -38.27 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.72 Total: 1.75 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.61 Total: 5.19 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.65 Total: -55.19 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.29 Total: -11.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.37 -6.90 -38.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107144258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.409 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds