Wall clock time and date at job start Tue Mar 31 2020 21:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00375 * 2 1 4 4 C 1.53000 * 109.47264 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47438 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47438 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47126 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99897 * 359.72195 * 7 6 5 9 9 N 1.34773 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00240 * 179.72093 * 9 7 6 11 11 C 1.50709 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.35344 * 126.75281 * 94.71435 * 11 10 9 13 13 N 1.35307 * 106.17571 * 179.85248 * 12 11 10 14 14 C 1.46498 * 125.87256 * 180.18707 * 13 12 11 15 15 C 1.53953 * 113.74065 * 14.03254 * 14 13 12 16 16 N 1.47814 * 86.03550 * 222.08605 * 15 14 13 17 17 C 1.36938 * 134.45258 * 204.63848 * 16 15 14 18 18 H 1.08004 * 119.99809 * 173.35146 * 17 16 15 19 19 C 1.38814 * 120.00108 * 353.35646 * 17 16 15 20 20 N 1.31619 * 119.99894 * 5.05940 * 19 17 16 21 21 Si 1.86797 * 119.99680 * 185.06207 * 19 17 16 22 22 H 1.48500 * 109.47256 * 94.98917 * 21 19 17 23 23 H 1.48502 * 109.47006 * 214.98490 * 21 19 17 24 24 H 1.48496 * 109.47407 * 334.98304 * 21 19 17 25 25 C 1.47575 * 91.05321 * 24.54975 * 16 15 14 26 26 N 1.28722 * 108.26411 * 0.41697 * 13 12 11 27 27 N 1.28630 * 110.17555 * 359.73383 * 26 13 12 28 28 H 1.08996 * 109.47419 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47101 * 300.00092 * 1 2 3 30 30 H 1.08999 * 109.47045 * 60.00038 * 1 2 3 31 31 H 1.09003 * 109.47232 * 59.99957 * 3 2 1 32 32 H 1.09000 * 109.47109 * 299.99793 * 3 2 1 33 33 H 1.09003 * 109.47038 * 59.99830 * 4 3 2 34 34 H 1.09003 * 109.47386 * 299.99833 * 4 3 2 35 35 H 1.09003 * 109.47112 * 59.99916 * 5 4 3 36 36 H 1.09000 * 109.47056 * 299.99859 * 5 4 3 37 37 H 1.09003 * 109.47038 * 59.99871 * 6 5 4 38 38 H 1.09000 * 109.46882 * 299.99965 * 6 5 4 39 39 H 0.97006 * 119.99964 * 359.72386 * 9 7 6 40 40 H 1.08999 * 109.47211 * 299.99637 * 10 9 7 41 41 H 1.09003 * 109.47239 * 60.00387 * 10 9 7 42 42 H 1.08006 * 126.91079 * 359.97438 * 12 11 10 43 43 H 1.09001 * 112.94786 * 145.62660 * 14 13 12 44 44 H 1.09004 * 113.76439 * 336.35129 * 15 14 13 45 45 H 1.08994 * 113.76870 * 107.74630 * 15 14 13 46 46 H 0.97004 * 119.99723 * 180.02562 * 20 19 17 47 47 H 1.08996 * 113.77255 * 221.15145 * 25 16 15 48 48 H 1.09005 * 113.87280 * 89.76648 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 6 5.6831 2.4613 -0.0026 7 6 6.2961 3.8380 -0.0026 8 8 5.5833 4.8192 -0.0067 9 7 7.6364 3.9788 -0.0041 10 6 8.2324 5.3171 -0.0103 11 6 9.7348 5.1980 -0.0115 12 6 10.5479 5.2184 -1.0933 13 7 11.8084 5.0847 -0.6199 14 6 13.0302 5.0563 -1.4277 15 6 12.8258 5.5316 -2.8776 16 7 13.6969 4.4012 -3.2625 17 6 14.5072 4.1365 -4.3342 18 1 15.1376 3.2595 -4.3310 19 6 14.5185 4.9954 -5.4247 20 7 13.8272 6.1148 -5.3879 21 14 15.5147 4.5623 -6.9443 22 1 14.6384 3.8867 -7.9348 23 1 16.0717 5.8028 -7.5412 24 1 16.6260 3.6532 -6.5653 25 6 13.3447 3.6739 -2.0277 26 7 11.7492 4.9817 0.6618 27 7 10.5264 5.0456 1.0560 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8567 0.6437 -0.8909 34 1 3.8575 0.6435 0.8891 35 1 3.8367 3.1234 0.8887 36 1 3.8359 3.1229 -0.8913 37 1 6.0039 1.9203 -0.8928 38 1 6.0054 1.9205 0.8872 39 1 8.2066 3.1940 -0.0012 40 1 7.9102 5.8542 -0.9024 41 1 7.9115 5.8619 0.8776 42 1 10.2506 5.3227 -2.1264 43 1 13.8803 5.5219 -0.9289 44 1 11.7991 5.4353 -3.2309 45 1 13.2579 6.5108 -3.0840 46 1 13.8348 6.7148 -6.1501 47 1 14.1902 3.1725 -1.5567 48 1 12.4710 3.0299 -2.1290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107144258.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:52 Heat of formation + Delta-G solvation = 37.557233 kcal Electronic energy + Delta-G solvation = -27630.333859 eV Core-core repulsion = 23530.490001 eV Total energy + Delta-G solvation = -4099.843858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.34864 -40.71253 -39.92938 -38.91891 -36.40819 -35.59514 -34.94940 -33.66198 -32.54647 -30.89159 -29.70010 -28.14185 -27.15783 -26.78046 -26.00196 -24.65726 -23.41436 -22.41889 -22.10410 -21.26170 -21.12695 -19.02995 -18.53241 -17.82579 -17.54164 -17.32522 -17.23314 -16.95286 -16.66634 -16.60445 -16.03436 -15.84287 -15.76621 -15.30661 -14.95350 -14.74461 -14.36163 -14.30953 -13.79433 -13.64223 -13.44297 -13.41254 -13.34234 -12.95864 -12.78984 -12.63681 -12.61669 -12.42087 -12.38265 -12.28931 -12.09175 -11.86429 -11.78624 -11.74235 -11.56074 -11.09487 -10.96857 -10.86755 -10.60943 -10.26688 -10.09823 -9.09195 -8.02277 -5.36497 0.57265 1.25193 1.29965 1.48177 1.50580 1.57862 1.69721 2.39696 2.43512 2.88331 3.06706 3.12955 3.32790 3.33898 3.73873 3.82735 3.92299 3.98821 4.00724 4.03516 4.16449 4.34477 4.37752 4.42637 4.50140 4.53907 4.55599 4.58362 4.60445 4.70074 4.78706 4.83886 4.85844 4.87468 4.93525 5.02180 5.02682 5.04754 5.09219 5.32221 5.35560 5.37695 5.45339 5.66629 5.76979 6.24003 6.55619 6.80396 7.26340 7.46275 7.48813 8.34496 9.15133 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013025 B = 0.001725 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.251727 B =16231.342825 C =17640.266783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.055 3.945 4 C -0.112 4.112 5 C -0.096 4.096 6 C -0.133 4.133 7 C 0.512 3.488 8 O -0.584 6.584 9 N -0.718 5.718 10 C 0.218 3.782 11 C -0.049 4.049 12 C -0.013 4.013 13 N -0.268 5.268 14 C 0.104 3.896 15 C 0.168 3.832 16 N -0.627 5.627 17 C -0.240 4.240 18 H 0.091 0.909 19 C -0.053 4.053 20 N -0.946 5.946 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.125 3.875 26 N -0.108 5.108 27 N -0.281 5.281 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.412 0.588 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.207 0.793 43 H 0.139 0.861 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.253 0.747 47 H 0.076 0.924 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.709 -9.017 10.212 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.021 4.021 4 C -0.150 4.150 5 C -0.134 4.134 6 C -0.173 4.173 7 C 0.301 3.699 8 O -0.464 6.464 9 N -0.371 5.371 10 C 0.093 3.907 11 C -0.188 4.188 12 C -0.167 4.167 13 N -0.061 5.061 14 C 0.002 3.998 15 C 0.042 3.958 16 N -0.354 5.354 17 C -0.368 4.368 18 H 0.109 0.891 19 C -0.247 4.247 20 N -0.594 5.594 21 Si 0.805 3.195 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.191 1.191 25 C -0.001 4.001 26 N -0.087 5.087 27 N -0.148 5.148 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.248 0.752 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.223 0.777 43 H 0.156 0.844 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.067 -8.597 11.222 23.736 hybrid contribution 0.197 0.270 -2.018 2.046 sum -18.870 -8.328 9.204 22.586 Atomic orbital electron populations 1.22909 0.79722 1.03745 1.00748 1.87818 1.21329 1.29081 1.95604 1.22644 0.94553 0.84165 1.00735 1.21464 0.92716 0.97008 1.03811 1.21150 0.93197 0.96130 1.02925 1.21690 0.96196 0.92627 1.06757 1.21277 0.81525 0.92656 0.74463 1.90695 1.61759 1.42438 1.51514 1.46034 1.06930 1.09030 1.75059 1.19232 0.82484 0.85335 1.03670 1.21946 0.97575 1.10374 0.88950 1.23824 0.83516 1.06446 1.02880 1.47717 1.08562 1.43925 1.05890 1.24726 0.83746 1.01209 0.90158 1.22566 0.94701 0.93914 0.84667 1.45875 1.50035 1.18083 1.21407 1.19342 1.16041 1.08139 0.93242 0.89110 1.25599 1.01389 0.97000 1.00757 1.69927 1.46178 1.11873 1.31383 0.85085 0.78172 0.76910 0.79303 1.21463 1.22178 1.19079 1.23021 0.99275 0.92423 0.85382 1.78282 1.15705 1.20833 0.93872 1.75007 0.96054 1.16773 1.26946 0.88599 0.93291 0.93385 0.92822 0.92936 0.90662 0.90554 0.91933 0.91984 0.86553 0.86598 0.75219 0.88865 0.90447 0.77654 0.84375 0.93444 0.92172 0.93774 0.90596 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.00 10.70 -148.98 -1.59 -8.60 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.11 -1.37 5.58 30.59 0.17 -1.20 16 5 C -0.10 -1.33 4.50 30.59 0.14 -1.19 16 6 C -0.13 -1.62 5.70 29.85 0.17 -1.45 16 7 C 0.51 10.16 7.83 87.66 0.69 10.85 16 8 O -0.58 -16.34 15.98 -3.03 -0.05 -16.39 16 9 N -0.72 -13.32 5.55 -466.78 -2.59 -15.91 16 10 C 0.22 4.76 6.23 85.64 0.53 5.30 16 11 C -0.05 -1.27 6.62 41.60 0.28 -1.00 16 12 C -0.01 -0.35 10.72 83.49 0.89 0.54 16 13 N -0.27 -8.13 3.54 -332.01 -1.18 -9.30 16 14 C 0.10 3.37 5.14 46.75 0.24 3.61 16 15 C 0.17 6.70 6.81 86.44 0.59 7.29 16 16 N -0.63 -27.96 3.70 -716.62 -2.65 -30.61 16 17 C -0.24 -12.07 10.70 84.03 0.90 -11.17 16 18 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 19 C -0.05 -2.74 5.50 84.86 0.47 -2.28 16 20 N -0.95 -51.74 11.51 21.65 0.25 -51.49 16 21 Si 0.98 42.03 29.56 68.60 2.03 44.06 16 22 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.30 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 25 C 0.13 4.30 8.74 86.49 0.76 5.06 16 26 N -0.11 -3.54 13.17 37.02 0.49 -3.05 16 27 N -0.28 -8.75 12.41 -48.59 -0.60 -9.36 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.41 6.29 8.46 -92.70 -0.78 5.50 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.21 4.74 6.74 -2.91 -0.02 4.72 16 43 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 44 H 0.05 1.84 6.31 -2.38 -0.02 1.83 16 45 H 0.06 2.74 7.37 -2.39 -0.02 2.72 16 46 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 47 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -66.74 403.66 1.78 -64.96 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.18 Total: 18.62 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 7.49 Total: 17.06 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.28 Total: -119.71 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.64 Total: -24.98 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -66.74 1.78 -64.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107144258.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.521 kcal (2) G-P(sol) polarization free energy of solvation -66.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds