Wall clock time and date at job start Tue Mar 31 2020 19:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47190 * 2 1 4 4 N 1.28517 * 124.44314 * 89.97643 * 3 2 1 5 5 C 1.31133 * 109.05885 * 180.02562 * 4 3 2 6 6 C 1.50710 * 127.10904 * 180.02562 * 5 4 3 7 7 C 1.40918 * 105.77947 * 0.02562 * 5 4 3 8 8 C 1.47801 * 127.23860 * 180.02562 * 7 5 4 9 9 O 1.21556 * 119.99828 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99700 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99647 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46777 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.51558 * 60.10545 * 12 11 10 14 14 C 1.53297 * 109.55051 * 180.22727 * 12 11 10 15 15 N 1.47161 * 108.38409 * 172.24986 * 14 12 11 16 16 C 1.36932 * 120.97818 * 129.48616 * 15 14 12 17 17 H 1.08003 * 119.99805 * 206.21534 * 16 15 14 18 18 C 1.38816 * 120.00222 * 26.21787 * 16 15 14 19 19 N 1.31615 * 119.99874 * 16.92074 * 18 16 15 20 20 Si 1.86802 * 119.99757 * 196.91979 * 18 16 15 21 21 H 1.48499 * 109.47015 * 94.61787 * 20 18 16 22 22 H 1.48495 * 109.47062 * 214.62143 * 20 18 16 23 23 H 1.48501 * 109.47048 * 334.61927 * 20 18 16 24 24 C 1.47144 * 118.03546 * 309.46881 * 15 14 12 25 25 C 1.53295 * 108.38791 * 50.53058 * 24 15 14 26 26 O 1.42953 * 109.51548 * 299.99838 * 12 11 10 27 27 N 1.28592 * 124.44531 * 270.30924 * 3 2 1 28 28 H 1.09008 * 109.47143 * 59.99562 * 1 2 3 29 29 H 1.08997 * 109.47746 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47114 * 300.00061 * 1 2 3 31 31 H 1.08994 * 109.46960 * 239.99584 * 2 1 3 32 32 H 1.09002 * 109.46485 * 120.00259 * 2 1 3 33 33 H 1.08997 * 109.46896 * 269.97745 * 6 5 4 34 34 H 1.08997 * 109.47000 * 29.97423 * 6 5 4 35 35 H 1.09000 * 109.46803 * 149.97467 * 6 5 4 36 36 H 0.97002 * 120.00095 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47075 * 60.00158 * 11 10 8 38 38 H 1.08999 * 109.47425 * 299.99896 * 11 10 8 39 39 H 1.09005 * 109.46772 * 299.89548 * 13 12 11 40 40 H 1.08998 * 109.47452 * 59.89553 * 13 12 11 41 41 H 1.08997 * 109.47406 * 179.89718 * 13 12 11 42 42 H 1.08997 * 109.68565 * 291.97452 * 14 12 11 43 43 H 1.08997 * 109.68473 * 52.49385 * 14 12 11 44 44 H 0.97006 * 119.99439 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.68191 * 290.80778 * 24 15 14 46 46 H 1.08994 * 109.68285 * 170.25684 * 24 15 14 47 47 H 1.09004 * 109.50951 * 67.62473 * 25 24 15 48 48 H 1.08997 * 109.51466 * 187.72498 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0666 1.0599 5 6 2.6813 3.2588 0.7120 6 6 3.0797 4.3860 1.6296 7 6 2.6841 3.2681 -0.6972 8 6 3.0784 4.3832 -1.5834 9 8 3.4508 5.4370 -1.1054 10 7 3.0250 4.2317 -2.9216 11 6 3.4152 5.3373 -3.8000 12 6 3.2626 4.9066 -5.2603 13 6 1.8043 4.5324 -5.5330 14 6 3.6759 6.0603 -6.1812 15 7 3.6994 5.5630 -7.5661 16 6 3.0488 6.2339 -8.5669 17 1 2.7060 5.6998 -9.4409 18 6 2.8298 7.6004 -8.4584 19 7 3.5153 8.3095 -7.5869 20 14 1.5623 8.4327 -9.5492 21 1 0.2676 8.5185 -8.8270 22 1 2.0279 9.7998 -9.8948 23 1 1.3838 7.6415 -10.7932 24 6 4.4429 4.3240 -7.8435 25 6 3.9923 3.2549 -6.8416 26 8 4.1011 3.7772 -5.5152 27 7 2.2554 2.0688 -1.0604 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.2069 5.0002 1.8507 34 1 3.4795 3.9756 2.5568 35 1 3.8409 4.9972 1.1448 36 1 2.7274 3.3909 -3.3030 37 1 4.4537 5.6057 -3.6067 38 1 2.7754 6.1982 -3.6068 39 1 1.5125 3.7091 -4.8809 40 1 1.1656 5.3939 -5.3385 41 1 1.6960 4.2275 -6.5738 42 1 2.9562 6.8743 -6.0956 43 1 4.6675 6.4161 -5.9016 44 1 3.3620 9.2643 -7.5108 45 1 5.5120 4.5045 -7.7316 46 1 4.2312 3.9882 -8.8586 47 1 2.9560 2.9823 -7.0416 48 1 4.6261 2.3736 -6.9397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108443338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:29 Heat of formation + Delta-G solvation = 51.501855 kcal Electronic energy + Delta-G solvation = -30152.032202 eV Core-core repulsion = 26052.793029 eV Total energy + Delta-G solvation = -4099.239173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.80407 -39.66367 -38.66499 -35.41344 -34.93363 -34.33505 -33.18829 -31.84394 -31.37511 -31.23408 -28.26921 -27.93625 -26.71215 -25.93277 -24.58658 -23.22838 -22.78882 -21.28826 -21.18639 -20.33284 -18.77648 -17.92242 -17.25692 -16.95696 -16.71118 -15.89422 -15.42105 -15.13487 -14.93911 -14.67448 -14.40007 -14.08128 -14.04681 -13.85550 -13.57249 -13.50110 -13.08547 -12.99999 -12.82923 -12.69905 -12.58305 -12.45372 -11.90226 -11.88923 -11.61973 -11.56348 -11.18737 -11.13052 -11.01638 -10.82488 -10.67444 -10.42581 -10.30320 -10.23629 -10.10393 -9.91166 -9.53261 -9.37718 -9.04153 -8.80496 -8.54006 -6.74514 -5.84717 -3.28114 1.22884 1.79572 1.91444 3.20792 3.32376 3.34133 3.41236 3.42686 3.74850 4.25592 4.36042 4.40416 4.43529 4.61757 4.63872 4.87437 5.08541 5.15323 5.18491 5.33293 5.35275 5.48552 5.51923 5.54701 5.57342 5.63155 5.70604 5.82039 5.93395 5.95196 6.01814 6.09187 6.14414 6.16551 6.31815 6.38382 6.47031 6.57504 6.67786 6.76637 6.83271 7.07674 7.46797 7.61675 7.70848 7.89160 8.01768 8.28743 8.32972 9.10633 9.73632 10.30895 11.23223 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.002693 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.868954 B =10394.725789 C =10933.035244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.143 5.143 4 N -0.295 5.295 5 C 0.060 3.940 6 C -0.068 4.068 7 C -0.043 4.043 8 C 0.604 3.396 9 O -0.530 6.530 10 N -0.700 5.700 11 C 0.139 3.861 12 C 0.078 3.922 13 C -0.162 4.162 14 C 0.160 3.840 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 N -0.248 5.248 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.408 0.592 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.030 0.970 44 H 0.256 0.744 45 H 0.026 0.974 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 -16.168 15.433 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.046 5.046 4 N -0.136 5.136 5 C -0.104 4.104 6 C -0.127 4.127 7 C -0.206 4.206 8 C 0.386 3.614 9 O -0.405 6.405 10 N -0.351 5.351 11 C 0.016 3.984 12 C 0.037 3.963 13 C -0.220 4.220 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 N -0.096 5.096 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.244 0.756 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.581 -16.574 15.859 23.392 hybrid contribution -0.678 0.831 -1.058 1.507 sum -5.259 -15.742 14.802 22.239 Atomic orbital electron populations 1.22198 0.92919 1.04026 1.03865 1.22076 0.96198 0.74141 1.06079 1.48094 1.44017 1.13270 0.99191 1.73917 1.18978 1.05368 1.15364 1.23282 1.00574 0.93814 0.92711 1.20235 1.02940 0.92782 0.96723 1.23018 1.09363 0.93778 0.94419 1.16616 0.78151 0.84913 0.81683 1.90785 1.47766 1.26629 1.75298 1.45835 1.66171 1.18224 1.04854 1.21450 1.01627 0.88629 0.86722 1.22558 0.90237 0.89832 0.93676 1.22212 0.96113 1.01015 1.02658 1.21291 1.00571 0.92493 0.82286 1.43997 1.58353 1.25229 1.03840 1.19175 1.29422 0.89686 1.00048 0.91401 1.25038 0.99404 0.96109 0.98978 1.70017 1.39913 1.06289 1.38273 0.86262 0.81428 0.78888 0.80136 1.21397 1.21688 1.20414 1.21595 0.95098 0.88191 0.96817 1.23033 1.00210 0.96284 0.83651 1.87818 1.64975 1.47101 1.30415 1.74362 1.14921 1.04445 1.15843 0.91207 0.89427 0.91365 0.87051 0.87153 0.90111 0.90806 0.88447 0.75568 0.90439 0.89689 0.93885 0.91865 0.90798 0.88504 0.95177 0.93423 0.95637 0.92067 0.93393 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.52 16 2 C 0.13 0.84 7.24 -4.05 -0.03 0.81 16 3 N -0.14 -1.60 3.94 -10.62 -0.04 -1.65 16 4 N -0.30 -3.66 12.01 33.92 0.41 -3.26 16 5 C 0.06 0.79 7.39 -81.87 -0.61 0.19 16 6 C -0.07 -0.73 10.00 36.01 0.36 -0.37 16 7 C -0.04 -0.62 7.21 -82.68 -0.60 -1.22 16 8 C 0.60 9.71 7.83 -12.35 -0.10 9.62 16 9 O -0.53 -9.54 15.20 5.32 0.08 -9.46 16 10 N -0.70 -10.96 5.15 -61.27 -0.32 -11.27 16 11 C 0.14 2.41 4.82 -4.04 -0.02 2.39 16 12 C 0.08 1.46 0.76 -90.46 -0.07 1.39 16 13 C -0.16 -2.83 7.91 37.16 0.29 -2.54 16 14 C 0.16 3.71 4.12 -3.53 -0.01 3.70 16 15 N -0.59 -14.32 2.56 -171.83 -0.44 -14.76 16 16 C -0.25 -6.72 9.65 -15.06 -0.15 -6.87 16 17 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 19 N -0.90 -25.50 11.14 55.49 0.62 -24.88 16 20 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.11 2.24 6.73 -3.54 -0.02 2.22 16 25 C 0.05 0.80 6.60 37.31 0.25 1.05 16 26 O -0.38 -7.17 9.97 -35.23 -0.35 -7.52 16 27 N -0.25 -3.28 11.84 33.42 0.40 -2.88 16 28 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 1.14 6.77 -51.93 -0.35 0.79 16 36 H 0.41 6.07 6.97 -40.82 -0.28 5.78 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.04 0.65 6.87 -51.93 -0.36 0.29 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.39 6.11 -51.93 -0.32 1.08 16 42 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16 47 H 0.05 0.81 6.25 -51.93 -0.32 0.48 16 48 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 387.28 15.07 5.84 5.84 Total: -1.00 -32.07 387.28 -6.66 -38.73 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.41 Total: 5.06 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -0.40 Total: 9.86 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.62 Total: -58.69 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.27 Total: -16.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.07 -6.66 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108443338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.231 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds