Wall clock time and date at job start Tue Mar 31 2020 19:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47190 * 2 1 4 4 N 1.28517 * 124.44314 * 89.97643 * 3 2 1 5 5 C 1.31133 * 109.05885 * 180.02562 * 4 3 2 6 6 C 1.50710 * 127.10904 * 180.02562 * 5 4 3 7 7 C 1.40918 * 105.77947 * 0.02562 * 5 4 3 8 8 C 1.47801 * 127.23860 * 180.02562 * 7 5 4 9 9 O 1.21556 * 119.99828 * 359.97438 * 8 7 5 10 10 N 1.34779 * 119.99700 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99647 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46777 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.51558 * 60.10545 * 12 11 10 14 14 C 1.53297 * 109.55051 * 180.22727 * 12 11 10 15 15 N 1.47161 * 108.38409 * 172.24986 * 14 12 11 16 16 C 1.36932 * 120.97818 * 129.48616 * 15 14 12 17 17 H 1.08003 * 119.99805 * 206.21534 * 16 15 14 18 18 C 1.38816 * 120.00222 * 26.21787 * 16 15 14 19 19 N 1.31615 * 119.99874 * 16.92074 * 18 16 15 20 20 Si 1.86802 * 119.99757 * 196.91979 * 18 16 15 21 21 H 1.48499 * 109.47015 * 94.61787 * 20 18 16 22 22 H 1.48495 * 109.47062 * 214.62143 * 20 18 16 23 23 H 1.48501 * 109.47048 * 334.61927 * 20 18 16 24 24 C 1.47144 * 118.03546 * 309.46881 * 15 14 12 25 25 C 1.53295 * 108.38791 * 50.53058 * 24 15 14 26 26 O 1.42953 * 109.51548 * 299.99838 * 12 11 10 27 27 N 1.28592 * 124.44531 * 270.30924 * 3 2 1 28 28 H 1.09008 * 109.47143 * 59.99562 * 1 2 3 29 29 H 1.08997 * 109.47746 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47114 * 300.00061 * 1 2 3 31 31 H 1.08994 * 109.46960 * 239.99584 * 2 1 3 32 32 H 1.09002 * 109.46485 * 120.00259 * 2 1 3 33 33 H 1.08997 * 109.46896 * 269.97745 * 6 5 4 34 34 H 1.08997 * 109.47000 * 29.97423 * 6 5 4 35 35 H 1.09000 * 109.46803 * 149.97467 * 6 5 4 36 36 H 0.97002 * 120.00095 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47075 * 60.00158 * 11 10 8 38 38 H 1.08999 * 109.47425 * 299.99896 * 11 10 8 39 39 H 1.09005 * 109.46772 * 299.89548 * 13 12 11 40 40 H 1.08998 * 109.47452 * 59.89553 * 13 12 11 41 41 H 1.08997 * 109.47406 * 179.89718 * 13 12 11 42 42 H 1.08997 * 109.68565 * 291.97452 * 14 12 11 43 43 H 1.08997 * 109.68473 * 52.49385 * 14 12 11 44 44 H 0.97006 * 119.99439 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.68191 * 290.80778 * 24 15 14 46 46 H 1.08994 * 109.68285 * 170.25684 * 24 15 14 47 47 H 1.09004 * 109.50951 * 67.62473 * 25 24 15 48 48 H 1.08997 * 109.51466 * 187.72498 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0666 1.0599 5 6 2.6813 3.2588 0.7120 6 6 3.0797 4.3860 1.6296 7 6 2.6841 3.2681 -0.6972 8 6 3.0784 4.3832 -1.5834 9 8 3.4508 5.4370 -1.1054 10 7 3.0250 4.2317 -2.9216 11 6 3.4152 5.3373 -3.8000 12 6 3.2626 4.9066 -5.2603 13 6 1.8043 4.5324 -5.5330 14 6 3.6759 6.0603 -6.1812 15 7 3.6994 5.5630 -7.5661 16 6 3.0488 6.2339 -8.5669 17 1 2.7060 5.6998 -9.4409 18 6 2.8298 7.6004 -8.4584 19 7 3.5153 8.3095 -7.5869 20 14 1.5623 8.4327 -9.5492 21 1 0.2676 8.5185 -8.8270 22 1 2.0279 9.7998 -9.8948 23 1 1.3838 7.6415 -10.7932 24 6 4.4429 4.3240 -7.8435 25 6 3.9923 3.2549 -6.8416 26 8 4.1011 3.7772 -5.5152 27 7 2.2554 2.0688 -1.0604 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.2069 5.0002 1.8507 34 1 3.4795 3.9756 2.5568 35 1 3.8409 4.9972 1.1448 36 1 2.7274 3.3909 -3.3030 37 1 4.4537 5.6057 -3.6067 38 1 2.7754 6.1982 -3.6068 39 1 1.5125 3.7091 -4.8809 40 1 1.1656 5.3939 -5.3385 41 1 1.6960 4.2275 -6.5738 42 1 2.9562 6.8743 -6.0956 43 1 4.6675 6.4161 -5.9016 44 1 3.3620 9.2643 -7.5108 45 1 5.5120 4.5045 -7.7316 46 1 4.2312 3.9882 -8.8586 47 1 2.9560 2.9823 -7.0416 48 1 4.6261 2.3736 -6.9397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108443338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:27 Heat of formation + Delta-G solvation = 28.765251 kcal Electronic energy + Delta-G solvation = -30153.018135 eV Core-core repulsion = 26052.793029 eV Total energy + Delta-G solvation = -4100.225107 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.74826 -41.09599 -40.11113 -36.59773 -36.11100 -35.91864 -34.21085 -33.22397 -33.06466 -32.28123 -29.59360 -29.13577 -28.10562 -27.56739 -25.68181 -24.96842 -23.64151 -22.84205 -22.13092 -21.56009 -20.35217 -19.12429 -18.78435 -18.16563 -17.64434 -17.43720 -16.86640 -16.75273 -16.12828 -16.00169 -15.60788 -15.55813 -15.34063 -15.17080 -14.86505 -14.67112 -14.49015 -14.31214 -13.96732 -13.82569 -13.45461 -13.38976 -13.17825 -13.03232 -12.92607 -12.79273 -12.59922 -12.51974 -12.43946 -12.35441 -12.11208 -12.06899 -11.95606 -11.84132 -11.40734 -11.33156 -11.08420 -10.74788 -10.49372 -10.37454 -10.08010 -8.70759 -7.88241 -5.34939 0.17680 0.81086 1.17391 1.47043 1.48682 1.57425 1.97882 2.11881 2.49100 2.76679 2.83000 3.26096 3.50751 3.61458 3.80306 3.91360 3.92603 3.97932 4.01824 4.11057 4.23483 4.42378 4.42980 4.46754 4.56838 4.59042 4.64466 4.70581 4.71243 4.75663 4.78716 4.80315 4.96544 4.97522 5.05635 5.11708 5.15315 5.20851 5.24091 5.33903 5.35182 5.55013 5.57236 5.63239 6.30485 6.36750 6.38558 6.98688 7.08196 7.09236 7.77449 8.31631 9.17471 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.002693 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.868954 B =10394.725789 C =10933.035244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.130 5.130 4 N -0.297 5.297 5 C 0.051 3.949 6 C -0.066 4.066 7 C -0.069 4.069 8 C 0.605 3.395 9 O -0.555 6.555 10 N -0.692 5.692 11 C 0.149 3.851 12 C 0.093 3.907 13 C -0.153 4.153 14 C 0.169 3.831 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.073 0.927 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.267 1.267 24 C 0.103 3.897 25 C 0.052 3.948 26 O -0.386 6.386 27 N -0.249 5.249 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.069 0.931 43 H -0.004 1.004 44 H 0.251 0.749 45 H 0.013 0.987 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.812 -19.137 15.953 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.034 5.034 4 N -0.139 5.139 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.230 4.230 8 C 0.390 3.610 9 O -0.432 6.432 10 N -0.343 5.343 11 C 0.024 3.976 12 C 0.052 3.948 13 C -0.210 4.210 14 C 0.042 3.958 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.794 3.206 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.191 1.191 24 C -0.023 4.023 25 C -0.025 4.025 26 O -0.306 6.306 27 N -0.099 5.099 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.252 0.748 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.014 0.986 44 H 0.060 0.940 45 H 0.031 0.969 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.876 -19.590 16.374 26.199 hybrid contribution -0.242 1.609 -1.219 2.033 sum -6.118 -17.982 15.154 24.299 Atomic orbital electron populations 1.22178 0.91998 1.05628 1.02555 1.22671 0.96933 0.72001 1.08236 1.48727 1.42062 1.14218 0.98437 1.73929 1.19141 1.05134 1.15700 1.23619 1.00468 0.94604 0.92543 1.20270 1.02937 0.92233 0.97017 1.22744 1.11577 0.94008 0.94713 1.16804 0.77448 0.85107 0.81676 1.90768 1.48867 1.27841 1.75704 1.45651 1.66193 1.17835 1.04662 1.21179 1.00843 0.89143 0.86399 1.22214 0.91178 0.88230 0.93183 1.22106 0.94644 1.01736 1.02544 1.21044 0.97926 0.93605 0.83202 1.44249 1.58878 1.26155 1.03829 1.19507 1.28901 0.89986 1.00456 0.90919 1.25776 1.01245 0.96830 1.00599 1.70179 1.41600 1.06101 1.40191 0.85271 0.78981 0.77408 0.78918 1.21194 1.22497 1.19122 1.21803 0.94069 0.87659 0.98723 1.23109 1.01657 0.95951 0.81791 1.87830 1.65054 1.46495 1.31205 1.74309 1.14814 1.04136 1.16608 0.92696 0.86365 0.92401 0.85176 0.84812 0.89265 0.88762 0.89853 0.74837 0.91807 0.90069 0.91068 0.92440 0.91859 0.91297 0.98620 0.94028 0.96885 0.90960 0.92227 0.86555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.24 71.98 0.74 -0.56 16 2 C 0.12 1.12 7.24 86.38 0.63 1.75 16 3 N -0.13 -2.62 3.94 -187.51 -0.74 -3.36 16 4 N -0.30 -6.84 12.01 -46.58 -0.56 -7.40 16 5 C 0.05 1.29 7.39 43.32 0.32 1.61 16 6 C -0.07 -1.37 10.00 71.24 0.71 -0.66 16 7 C -0.07 -1.96 7.21 42.24 0.30 -1.66 16 8 C 0.61 19.46 7.83 86.77 0.68 20.14 16 9 O -0.55 -20.39 15.20 -3.89 -0.06 -20.45 16 10 N -0.69 -21.34 5.15 -466.02 -2.40 -23.74 16 11 C 0.15 5.24 4.82 86.38 0.42 5.66 16 12 C 0.09 3.48 0.76 -10.69 -0.01 3.47 16 13 C -0.15 -5.15 7.91 71.98 0.57 -4.58 16 14 C 0.17 8.10 4.12 86.35 0.36 8.46 16 15 N -0.61 -29.75 2.56 -697.55 -1.79 -31.53 16 16 C -0.26 -13.76 9.65 84.04 0.81 -12.95 16 17 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 18 C -0.05 -2.68 4.95 84.86 0.42 -2.26 16 19 N -0.93 -54.76 11.14 21.65 0.24 -54.52 16 20 Si 0.97 44.08 29.59 68.60 2.03 46.11 16 21 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 C 0.10 4.14 6.73 86.36 0.58 4.72 16 25 C 0.05 1.69 6.60 72.08 0.48 2.17 16 26 O -0.39 -13.90 9.97 -148.98 -1.49 -15.38 16 27 N -0.25 -6.17 11.84 -48.17 -0.57 -6.74 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.98 6.77 -2.39 -0.02 1.96 16 36 H 0.41 11.68 6.97 -92.71 -0.65 11.04 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.07 1.99 6.87 -2.38 -0.02 1.97 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.28 6.11 -2.39 -0.01 2.27 16 42 H 0.07 3.68 6.14 -2.39 -0.01 3.67 16 43 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 45 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 47 H 0.06 1.83 6.25 -2.38 -0.01 1.82 16 48 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -70.72 387.28 2.00 -68.72 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.33 Total: 23.00 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 7.00 Total: 25.31 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -5.82 Total: -127.30 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.54 Total: -35.83 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.72 2.00 -68.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108443338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.481 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds