Wall clock time and date at job start Tue Mar 31 2020 19:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47083 * 2 1 4 4 N 1.28527 * 124.44297 * 89.97704 * 3 2 1 5 5 C 1.31130 * 109.05985 * 180.02562 * 4 3 2 6 6 C 1.50702 * 127.11310 * 180.02562 * 5 4 3 7 7 C 1.40929 * 105.77506 * 359.97438 * 5 4 3 8 8 C 1.47807 * 127.23492 * 179.97438 * 7 5 4 9 9 O 1.21548 * 119.99832 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99858 * 180.02562 * 8 7 5 11 11 C 1.46498 * 119.99954 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46984 * 179.97438 * 11 10 8 13 13 C 1.52993 * 109.55650 * 304.87668 * 12 11 10 14 14 C 1.53290 * 109.51251 * 184.74641 * 12 11 10 15 15 N 1.47166 * 108.41716 * 187.79804 * 14 12 11 16 16 C 1.36933 * 120.99120 * 230.54983 * 15 14 12 17 17 H 1.08000 * 120.00180 * 153.70650 * 16 15 14 18 18 C 1.38813 * 120.00094 * 333.70170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 160.02568 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 340.02586 * 18 16 15 21 21 H 1.48500 * 109.46937 * 91.85831 * 20 18 16 22 22 H 1.48502 * 109.47208 * 211.85857 * 20 18 16 23 23 H 1.48499 * 109.47296 * 331.85455 * 20 18 16 24 24 C 1.47155 * 118.02599 * 50.46688 * 15 14 12 25 25 C 1.53300 * 108.41547 * 309.53664 * 24 15 14 26 26 O 1.42958 * 109.22465 * 52.28134 * 25 24 15 27 27 N 1.28588 * 124.44925 * 270.28466 * 3 2 1 28 28 H 1.08997 * 109.47258 * 59.99582 * 1 2 3 29 29 H 1.08993 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46821 * 299.99995 * 1 2 3 31 31 H 1.08997 * 109.46914 * 240.00061 * 2 1 3 32 32 H 1.09000 * 109.46606 * 120.00079 * 2 1 3 33 33 H 1.09005 * 109.46642 * 269.97332 * 6 5 4 34 34 H 1.08990 * 109.46930 * 29.97126 * 6 5 4 35 35 H 1.08996 * 109.47229 * 149.98012 * 6 5 4 36 36 H 0.97002 * 120.00162 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46914 * 59.99984 * 11 10 8 38 38 H 1.08993 * 109.47356 * 299.99994 * 11 10 8 39 39 H 1.09005 * 109.47423 * 180.12984 * 13 12 11 40 40 H 1.09004 * 109.47263 * 300.12500 * 13 12 11 41 41 H 1.08996 * 109.47425 * 60.12348 * 13 12 11 42 42 H 1.09003 * 109.68354 * 307.50018 * 14 12 11 43 43 H 1.09005 * 109.68141 * 68.04879 * 14 12 11 44 44 H 0.96999 * 119.99776 * 179.97438 * 19 18 16 45 45 H 1.08995 * 109.68037 * 189.78791 * 24 15 14 46 46 H 1.09003 * 109.67969 * 69.27666 * 24 15 14 47 47 H 1.09000 * 109.50966 * 172.20794 * 25 24 15 48 48 H 1.09003 * 109.50501 * 292.30491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6813 3.2588 0.7121 6 6 3.0797 4.3860 1.6296 7 6 2.6852 3.2676 -0.6972 8 6 3.0790 4.3830 -1.5834 9 8 3.4507 5.4370 -1.1054 10 7 3.0258 4.2315 -2.9216 11 6 3.4155 5.3372 -3.8001 12 6 3.2646 4.9060 -5.2603 13 6 4.0683 3.6269 -5.5022 14 6 3.7833 6.0182 -6.1788 15 7 3.4568 5.6630 -7.5692 16 6 4.4145 5.6907 -8.5475 17 1 4.3155 5.0594 -9.4181 18 6 5.5126 6.5303 -8.4202 19 7 6.6042 6.2963 -9.1173 20 14 5.4411 7.9921 -7.2595 21 1 5.9559 7.5907 -5.9257 22 1 6.2752 9.0952 -7.8006 23 1 4.0353 8.4526 -7.1295 24 6 2.0709 5.2753 -7.8766 25 6 1.6356 4.1993 -6.8752 26 8 1.8848 4.6643 -5.5465 27 7 2.2558 2.0687 -1.0604 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2068 5.0003 1.8507 34 1 3.4795 3.9756 2.5568 35 1 3.8408 4.9973 1.1448 36 1 2.7295 3.3903 -3.3031 37 1 4.4539 5.6063 -3.6066 38 1 2.7751 6.1978 -3.6069 39 1 3.9617 3.3222 -6.5434 40 1 5.1201 3.8118 -5.2838 41 1 3.6960 2.8353 -4.8520 42 1 3.3038 6.9621 -5.9194 43 1 4.8636 6.1120 -6.0678 44 1 7.3714 6.8832 -9.0287 45 1 2.0173 4.8772 -8.8898 46 1 1.4186 6.1442 -7.7886 47 1 0.5712 3.9981 -6.9969 48 1 2.2017 3.2852 -7.0541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108443339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:34 Heat of formation + Delta-G solvation = 58.413491 kcal Electronic energy + Delta-G solvation = -30276.534672 eV Core-core repulsion = 26177.595210 eV Total energy + Delta-G solvation = -4098.939462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.87025 -39.88465 -38.89029 -35.48976 -35.11594 -34.55425 -33.27570 -31.98521 -31.59447 -31.47555 -28.49122 -28.27771 -26.89638 -26.05955 -24.69076 -23.61620 -22.85210 -21.30423 -21.17654 -20.46004 -19.15539 -18.07170 -17.35560 -17.08260 -16.79428 -16.15378 -15.63628 -15.43166 -15.03269 -14.77153 -14.62306 -14.31202 -14.12999 -13.99816 -13.82743 -13.63312 -13.38627 -13.08879 -12.81809 -12.75464 -12.57803 -12.36272 -12.31166 -11.93547 -11.87798 -11.67761 -11.53983 -11.39957 -11.19566 -11.07544 -10.86007 -10.49419 -10.39438 -10.23052 -10.13709 -9.73960 -9.52626 -9.45211 -9.40157 -8.96875 -8.59062 -7.04358 -6.01557 -3.38798 1.15130 1.72850 1.85520 3.07905 3.21631 3.28022 3.46350 3.48393 3.67526 4.03896 4.32189 4.34922 4.46585 4.54647 4.59828 4.73258 4.78502 5.03965 5.14671 5.16266 5.23235 5.28817 5.30937 5.40780 5.50476 5.51906 5.55958 5.73248 5.75637 5.76831 5.81649 5.90489 5.99088 6.04568 6.09666 6.23256 6.27361 6.32205 6.43526 6.44537 6.50204 6.60970 6.75343 7.47891 7.62776 7.81909 7.94336 8.16308 8.24078 8.81795 9.62809 9.99056 11.13958 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.002941 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.978921 B = 9519.895868 C =10473.147525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.142 5.142 4 N -0.294 5.294 5 C 0.061 3.939 6 C -0.068 4.068 7 C -0.044 4.044 8 C 0.606 3.394 9 O -0.529 6.529 10 N -0.701 5.701 11 C 0.135 3.865 12 C 0.089 3.911 13 C -0.165 4.165 14 C 0.109 3.891 15 N -0.603 5.603 16 C -0.261 4.261 17 H 0.088 0.912 18 C 0.025 3.975 19 N -0.906 5.906 20 Si 0.878 3.122 21 H -0.285 1.285 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.113 3.887 25 C 0.044 3.956 26 O -0.379 6.379 27 N -0.247 5.247 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.409 0.591 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.083 0.917 44 H 0.264 0.736 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.085 0.915 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.249 -12.581 18.755 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.045 5.045 4 N -0.135 5.135 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.207 4.207 8 C 0.389 3.611 9 O -0.404 6.404 10 N -0.353 5.353 11 C 0.011 3.989 12 C 0.047 3.953 13 C -0.223 4.223 14 C -0.018 4.018 15 N -0.328 5.328 16 C -0.389 4.389 17 H 0.106 0.894 18 C -0.174 4.174 19 N -0.548 5.548 20 Si 0.708 3.292 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.013 4.013 25 C -0.034 4.034 26 O -0.299 6.299 27 N -0.095 5.095 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.246 0.754 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.049 0.951 47 H 0.103 0.897 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.401 -13.020 19.094 25.770 hybrid contribution 0.333 1.102 0.087 1.154 sum -11.067 -11.918 19.181 25.148 Atomic orbital electron populations 1.22198 0.92863 1.04072 1.03880 1.22097 0.96249 0.74056 1.06131 1.48110 1.43898 1.13291 0.99159 1.73931 1.18918 1.05332 1.15334 1.23283 1.00534 0.93830 0.92660 1.20236 1.02927 0.92778 0.96765 1.22959 1.09587 0.93784 0.94395 1.16607 0.77990 0.84950 0.81585 1.90784 1.47705 1.26620 1.75300 1.45820 1.66467 1.18083 1.04900 1.21458 1.01374 0.89343 0.86737 1.22246 0.83064 0.97000 0.92946 1.22233 1.00363 0.96348 1.03340 1.21921 1.00311 0.94443 0.85125 1.44302 1.05231 1.80256 1.03011 1.18880 0.99310 1.19290 1.01402 0.89418 1.25244 0.96114 0.98230 0.97805 1.69817 1.02809 1.38474 1.43750 0.87053 0.77895 0.84212 0.80036 1.21286 1.22915 1.19422 1.21629 0.86384 0.95739 0.97547 1.23085 0.99949 0.97309 0.83074 1.87858 1.24134 1.87145 1.30730 1.74348 1.14811 1.04447 1.15910 0.91173 0.89382 0.91367 0.87010 0.87103 0.90096 0.90742 0.88488 0.75393 0.89606 0.90297 0.90208 0.91536 0.93334 0.94535 0.89877 0.92629 0.91035 0.95113 0.89663 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.13 0.79 7.24 -4.04 -0.03 0.76 16 3 N -0.14 -1.52 3.94 -10.62 -0.04 -1.57 16 4 N -0.29 -3.52 12.01 33.92 0.41 -3.11 16 5 C 0.06 0.77 7.39 -81.87 -0.61 0.17 16 6 C -0.07 -0.70 10.00 36.01 0.36 -0.34 16 7 C -0.04 -0.62 7.21 -82.68 -0.60 -1.21 16 8 C 0.61 9.28 7.83 -12.35 -0.10 9.18 16 9 O -0.53 -9.10 15.20 5.32 0.08 -9.02 16 10 N -0.70 -10.35 5.19 -61.27 -0.32 -10.67 16 11 C 0.13 2.19 4.85 -4.04 -0.02 2.17 16 12 C 0.09 1.57 0.78 -90.47 -0.07 1.50 16 13 C -0.17 -2.77 7.86 37.15 0.29 -2.47 16 14 C 0.11 2.33 3.05 -3.53 -0.01 2.32 16 15 N -0.60 -13.89 2.35 -171.81 -0.40 -14.29 16 16 C -0.26 -7.04 10.10 -15.06 -0.15 -7.19 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 18 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 19 N -0.91 -27.19 13.97 55.49 0.78 -26.41 16 20 Si 0.88 22.07 24.29 -169.99 -4.13 17.94 16 21 H -0.29 -6.86 6.58 56.52 0.37 -6.49 16 22 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 23 H -0.27 -6.71 6.55 56.52 0.37 -6.34 16 24 C 0.11 2.15 6.73 -3.53 -0.02 2.13 16 25 C 0.04 0.70 6.60 37.31 0.25 0.95 16 26 O -0.38 -6.59 10.17 -35.23 -0.36 -6.94 16 27 N -0.25 -3.13 11.84 33.43 0.40 -2.73 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 1.09 6.77 -51.93 -0.35 0.74 16 36 H 0.41 5.68 6.77 -40.82 -0.28 5.40 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.47 6.12 -51.93 -0.32 1.15 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 0.69 6.59 -51.93 -0.34 0.35 16 42 H 0.04 0.81 6.86 -51.93 -0.36 0.45 16 43 H 0.08 1.92 4.60 -51.93 -0.24 1.68 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.85 6.26 -51.93 -0.32 0.53 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -33.20 380.33 -5.59 -38.79 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.31 Total: 4.19 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.42 Total: 8.10 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.81 Total: -58.78 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.28 Total: -15.97 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.13 Total: 17.94 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.20 -5.59 -38.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108443339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.201 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds