Wall clock time and date at job start Tue Mar 31 2020 19:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47083 * 2 1 4 4 N 1.28527 * 124.44297 * 89.97704 * 3 2 1 5 5 C 1.31130 * 109.05985 * 180.02562 * 4 3 2 6 6 C 1.50702 * 127.11310 * 180.02562 * 5 4 3 7 7 C 1.40929 * 105.77506 * 359.97438 * 5 4 3 8 8 C 1.47807 * 127.23492 * 179.97438 * 7 5 4 9 9 O 1.21548 * 119.99832 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99858 * 180.02562 * 8 7 5 11 11 C 1.46498 * 119.99954 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46984 * 179.97438 * 11 10 8 13 13 C 1.52993 * 109.55650 * 304.87668 * 12 11 10 14 14 C 1.53290 * 109.51251 * 184.74641 * 12 11 10 15 15 N 1.47166 * 108.41716 * 187.79804 * 14 12 11 16 16 C 1.36933 * 120.99120 * 230.54983 * 15 14 12 17 17 H 1.08000 * 120.00180 * 153.70650 * 16 15 14 18 18 C 1.38813 * 120.00094 * 333.70170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 160.02568 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 340.02586 * 18 16 15 21 21 H 1.48500 * 109.46937 * 91.85831 * 20 18 16 22 22 H 1.48502 * 109.47208 * 211.85857 * 20 18 16 23 23 H 1.48499 * 109.47296 * 331.85455 * 20 18 16 24 24 C 1.47155 * 118.02599 * 50.46688 * 15 14 12 25 25 C 1.53300 * 108.41547 * 309.53664 * 24 15 14 26 26 O 1.42958 * 109.22465 * 52.28134 * 25 24 15 27 27 N 1.28588 * 124.44925 * 270.28466 * 3 2 1 28 28 H 1.08997 * 109.47258 * 59.99582 * 1 2 3 29 29 H 1.08993 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46821 * 299.99995 * 1 2 3 31 31 H 1.08997 * 109.46914 * 240.00061 * 2 1 3 32 32 H 1.09000 * 109.46606 * 120.00079 * 2 1 3 33 33 H 1.09005 * 109.46642 * 269.97332 * 6 5 4 34 34 H 1.08990 * 109.46930 * 29.97126 * 6 5 4 35 35 H 1.08996 * 109.47229 * 149.98012 * 6 5 4 36 36 H 0.97002 * 120.00162 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.46914 * 59.99984 * 11 10 8 38 38 H 1.08993 * 109.47356 * 299.99994 * 11 10 8 39 39 H 1.09005 * 109.47423 * 180.12984 * 13 12 11 40 40 H 1.09004 * 109.47263 * 300.12500 * 13 12 11 41 41 H 1.08996 * 109.47425 * 60.12348 * 13 12 11 42 42 H 1.09003 * 109.68354 * 307.50018 * 14 12 11 43 43 H 1.09005 * 109.68141 * 68.04879 * 14 12 11 44 44 H 0.96999 * 119.99776 * 179.97438 * 19 18 16 45 45 H 1.08995 * 109.68037 * 189.78791 * 24 15 14 46 46 H 1.09003 * 109.67969 * 69.27666 * 24 15 14 47 47 H 1.09000 * 109.50966 * 172.20794 * 25 24 15 48 48 H 1.09003 * 109.50501 * 292.30491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2602 2.0667 1.0599 5 6 2.6813 3.2588 0.7121 6 6 3.0797 4.3860 1.6296 7 6 2.6852 3.2676 -0.6972 8 6 3.0790 4.3830 -1.5834 9 8 3.4507 5.4370 -1.1054 10 7 3.0258 4.2315 -2.9216 11 6 3.4155 5.3372 -3.8001 12 6 3.2646 4.9060 -5.2603 13 6 4.0683 3.6269 -5.5022 14 6 3.7833 6.0182 -6.1788 15 7 3.4568 5.6630 -7.5692 16 6 4.4145 5.6907 -8.5475 17 1 4.3155 5.0594 -9.4181 18 6 5.5126 6.5303 -8.4202 19 7 6.6042 6.2963 -9.1173 20 14 5.4411 7.9921 -7.2595 21 1 5.9559 7.5907 -5.9257 22 1 6.2752 9.0952 -7.8006 23 1 4.0353 8.4526 -7.1295 24 6 2.0709 5.2753 -7.8766 25 6 1.6356 4.1993 -6.8752 26 8 1.8848 4.6643 -5.5465 27 7 2.2558 2.0687 -1.0604 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.2068 5.0003 1.8507 34 1 3.4795 3.9756 2.5568 35 1 3.8408 4.9973 1.1448 36 1 2.7295 3.3903 -3.3031 37 1 4.4539 5.6063 -3.6066 38 1 2.7751 6.1978 -3.6069 39 1 3.9617 3.3222 -6.5434 40 1 5.1201 3.8118 -5.2838 41 1 3.6960 2.8353 -4.8520 42 1 3.3038 6.9621 -5.9194 43 1 4.8636 6.1120 -6.0678 44 1 7.3714 6.8832 -9.0287 45 1 2.0173 4.8772 -8.8898 46 1 1.4186 6.1442 -7.7886 47 1 0.5712 3.9981 -6.9969 48 1 2.2017 3.2852 -7.0541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108443339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:33 Heat of formation + Delta-G solvation = 33.284145 kcal Electronic energy + Delta-G solvation = -30277.624363 eV Core-core repulsion = 26177.595210 eV Total energy + Delta-G solvation = -4100.029153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.76080 -41.24349 -40.21992 -36.74476 -36.17210 -35.98240 -34.24515 -33.63695 -33.17794 -32.30549 -29.99854 -29.15686 -28.21252 -27.60718 -25.70335 -25.31145 -23.64545 -22.74719 -22.14988 -21.60388 -20.67568 -19.18883 -18.93485 -18.20377 -17.78563 -17.54496 -17.09108 -16.88642 -16.22984 -16.03771 -15.88067 -15.65738 -15.49248 -15.35007 -14.89443 -14.78582 -14.41532 -14.27687 -14.02414 -13.90866 -13.81264 -13.54986 -13.41097 -13.09763 -13.04647 -13.03486 -12.71172 -12.60264 -12.38674 -12.35831 -12.22289 -12.07954 -12.00428 -11.62610 -11.42433 -11.36736 -11.19495 -11.05682 -10.49468 -10.40087 -10.11589 -8.94971 -8.19411 -5.51861 0.16037 0.80039 1.15883 1.26645 1.39639 1.46373 1.93404 2.09301 2.37475 2.65376 2.78893 2.98827 3.23063 3.58587 3.72361 3.81186 3.84326 3.89610 3.90683 3.96070 4.22553 4.29230 4.40140 4.41775 4.44439 4.51793 4.54976 4.59898 4.63538 4.69804 4.70407 4.74854 4.79262 4.81296 4.87630 4.96704 5.03244 5.12182 5.14842 5.18354 5.30789 5.33569 5.55861 5.78782 6.09035 6.22862 6.32996 6.81810 6.95440 7.07065 7.54550 7.95802 8.99850 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.002941 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.978921 B = 9519.895868 C =10473.147525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.130 5.130 4 N -0.298 5.298 5 C 0.051 3.949 6 C -0.066 4.066 7 C -0.070 4.070 8 C 0.608 3.392 9 O -0.553 6.553 10 N -0.694 5.694 11 C 0.141 3.859 12 C 0.101 3.899 13 C -0.159 4.159 14 C 0.104 3.896 15 N -0.616 5.616 16 C -0.242 4.242 17 H 0.062 0.938 18 C -0.028 4.028 19 N -0.952 5.952 20 Si 0.931 3.069 21 H -0.271 1.271 22 H -0.310 1.310 23 H -0.266 1.266 24 C 0.106 3.894 25 C 0.049 3.951 26 O -0.378 6.378 27 N -0.249 5.249 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.415 0.585 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.262 0.738 45 H 0.074 0.926 46 H 0.035 0.965 47 H 0.124 0.876 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.186 -14.258 20.851 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.035 5.035 4 N -0.139 5.139 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.231 4.231 8 C 0.392 3.608 9 O -0.430 6.430 10 N -0.346 5.346 11 C 0.017 3.983 12 C 0.059 3.941 13 C -0.216 4.216 14 C -0.022 4.022 15 N -0.341 5.341 16 C -0.372 4.372 17 H 0.080 0.920 18 C -0.223 4.223 19 N -0.598 5.598 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.239 1.239 23 H -0.190 1.190 24 C -0.019 4.019 25 C -0.028 4.028 26 O -0.297 6.297 27 N -0.099 5.099 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.253 0.747 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.053 0.947 47 H 0.141 0.859 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.388 -14.717 21.218 29.087 hybrid contribution 0.810 1.454 -0.590 1.766 sum -12.577 -13.262 20.628 27.561 Atomic orbital electron populations 1.22176 0.91985 1.05621 1.02571 1.22670 0.96951 0.72012 1.08218 1.48723 1.42084 1.14218 0.98441 1.73939 1.19122 1.05174 1.15710 1.23629 1.00442 0.94581 0.92579 1.20270 1.02949 0.92229 0.97015 1.22750 1.11602 0.94049 0.94698 1.16760 0.77368 0.85074 0.81621 1.90766 1.48789 1.27717 1.75691 1.45666 1.66433 1.17813 1.04687 1.21274 1.01301 0.89702 0.86069 1.21983 0.83387 0.95858 0.92825 1.22158 0.99960 0.96690 1.02805 1.21921 0.99328 0.95870 0.85118 1.44404 1.06288 1.80426 1.03021 1.18827 0.99631 1.17523 1.01174 0.92041 1.25771 0.96067 1.00578 0.99928 1.69929 1.03663 1.39708 1.46500 0.86171 0.77716 0.80997 0.79042 1.19742 1.23916 1.19038 1.21862 0.84157 0.96897 0.98981 1.23155 1.02226 0.95956 0.81438 1.87880 1.23509 1.87065 1.31287 1.74298 1.14744 1.04196 1.16641 0.92651 0.86406 0.92399 0.85181 0.84858 0.89262 0.88851 0.89745 0.74733 0.89815 0.90608 0.91952 0.92285 0.90551 0.94865 0.91810 0.92894 0.90718 0.94708 0.85865 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 71.98 0.74 -0.45 16 2 C 0.12 1.04 7.24 86.38 0.63 1.66 16 3 N -0.13 -2.50 3.94 -187.51 -0.74 -3.24 16 4 N -0.30 -6.54 12.01 -46.58 -0.56 -7.10 16 5 C 0.05 1.22 7.39 43.32 0.32 1.54 16 6 C -0.07 -1.28 10.00 71.24 0.71 -0.56 16 7 C -0.07 -1.86 7.21 42.25 0.30 -1.55 16 8 C 0.61 18.03 7.83 86.78 0.68 18.71 16 9 O -0.55 -18.77 15.20 -3.87 -0.06 -18.82 16 10 N -0.69 -19.41 5.19 -466.03 -2.42 -21.83 16 11 C 0.14 4.39 4.85 86.38 0.42 4.81 16 12 C 0.10 3.40 0.78 -10.70 -0.01 3.39 16 13 C -0.16 -5.08 7.86 71.98 0.57 -4.51 16 14 C 0.10 4.36 3.05 86.35 0.26 4.62 16 15 N -0.62 -28.05 2.35 -697.49 -1.64 -29.69 16 16 C -0.24 -13.27 10.10 84.03 0.85 -12.42 16 17 H 0.06 3.64 8.06 -2.91 -0.02 3.61 16 18 C -0.03 -1.62 5.26 84.86 0.45 -1.17 16 19 N -0.95 -58.78 13.97 21.65 0.30 -58.47 16 20 Si 0.93 46.26 24.29 68.60 1.67 47.92 16 21 H -0.27 -12.66 6.58 99.48 0.65 -12.01 16 22 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 23 H -0.27 -12.86 6.55 99.48 0.65 -12.21 16 24 C 0.11 3.86 6.73 86.35 0.58 4.44 16 25 C 0.05 1.45 6.60 72.08 0.48 1.92 16 26 O -0.38 -12.12 10.17 -148.98 -1.52 -13.63 16 27 N -0.25 -5.83 11.84 -48.16 -0.57 -6.40 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.86 6.77 -2.39 -0.02 1.84 16 36 H 0.41 10.59 6.77 -92.71 -0.63 9.96 16 37 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.06 2.22 6.12 -2.38 -0.01 2.21 16 40 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.08 1.99 6.59 -2.39 -0.02 1.98 16 42 H 0.03 1.43 6.86 -2.39 -0.02 1.41 16 43 H 0.06 2.93 4.60 -2.38 -0.01 2.92 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.07 2.65 7.96 -2.39 -0.02 2.63 16 46 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.06 1.68 6.26 -2.39 -0.01 1.67 16 Total: -1.00 -72.50 380.33 1.68 -70.82 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.25 Total: 20.02 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.97 Total: 20.43 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -5.63 Total: -126.73 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.57 Total: -32.46 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.92 kcal Total: -72.50 1.68 -70.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108443339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.100 kcal (2) G-P(sol) polarization free energy of solvation -72.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds