Wall clock time and date at job start Tue Mar 31 2020 21:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37355 * 125.83574 * 2 1 4 4 N 1.29398 * 108.82825 * 179.97438 * 3 2 1 5 5 N 1.40163 * 108.14481 * 359.97438 * 4 3 2 6 6 C 1.46505 * 126.35375 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46669 * 269.94739 * 6 5 4 8 8 O 1.21283 * 120.00454 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99666 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99777 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47161 * 176.62347 * 10 9 7 12 12 N 1.46496 * 109.47222 * 54.62419 * 11 10 9 13 13 C 1.36939 * 120.00331 * 62.83722 * 12 11 10 14 14 H 1.08005 * 119.99466 * 354.25996 * 13 12 11 15 15 C 1.38809 * 120.00281 * 174.25506 * 13 12 11 16 16 N 1.31625 * 120.00070 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47109 * 59.99637 * 17 15 13 19 19 H 1.48493 * 109.47419 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46783 * 300.00101 * 17 15 13 21 21 C 1.52995 * 109.47011 * 294.62376 * 11 10 9 22 22 C 1.53010 * 109.47372 * 179.97438 * 21 11 10 23 23 C 1.52998 * 109.46738 * 60.00162 * 22 21 11 24 24 C 1.53008 * 109.47155 * 300.00081 * 23 22 21 25 25 C 1.52997 * 109.47003 * 60.00110 * 24 23 22 26 26 C 1.34817 * 125.82863 * 179.97438 * 2 1 3 27 27 O 1.21811 * 126.30299 * 359.74698 * 26 2 1 28 28 H 1.08998 * 109.47911 * 270.01056 * 1 2 3 29 29 H 1.09009 * 109.47132 * 30.00878 * 1 2 3 30 30 H 1.09004 * 109.47569 * 149.99915 * 1 2 3 31 31 H 1.08001 * 125.58322 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46805 * 29.93988 * 6 5 4 33 33 H 1.08993 * 109.47018 * 149.94766 * 6 5 4 34 34 H 0.96992 * 120.00327 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46901 * 296.61968 * 10 9 7 36 36 H 1.09004 * 109.47804 * 56.62060 * 10 9 7 37 37 H 0.97001 * 120.00489 * 242.84311 * 12 11 10 38 38 H 0.96994 * 119.99550 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.47420 * 299.99773 * 21 11 10 40 40 H 1.09006 * 109.47267 * 60.00509 * 21 11 10 41 41 H 1.08997 * 109.46820 * 300.00333 * 22 21 11 42 42 H 1.08995 * 109.47427 * 180.02562 * 22 21 11 43 43 H 1.08996 * 109.47097 * 180.02562 * 23 22 21 44 44 H 1.08991 * 109.47326 * 60.00059 * 23 22 21 45 45 H 1.09008 * 109.46844 * 300.00279 * 24 23 22 46 46 H 1.09000 * 109.47188 * 180.02562 * 24 23 22 47 47 H 1.09004 * 109.47133 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.46843 * 59.99989 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5065 0.7351 0.0005 5 7 3.5343 -0.6663 0.0015 6 6 4.7312 -1.5112 0.0029 7 6 5.1418 -1.8028 -1.4175 8 8 4.4977 -1.3500 -2.3401 9 7 6.2241 -2.5677 -1.6625 10 6 6.6235 -2.8508 -3.0433 11 6 7.9201 -3.6629 -3.0428 12 7 7.7446 -4.8626 -2.2205 13 6 6.8198 -5.8077 -2.5767 14 1 6.1562 -5.6268 -3.4093 15 6 6.7355 -6.9980 -1.8677 16 7 7.5440 -7.2182 -0.8527 17 14 5.4744 -8.2875 -2.3540 18 1 5.7227 -8.7198 -3.7529 19 1 5.5873 -9.4573 -1.4463 20 1 4.1103 -7.7100 -2.2492 21 6 9.0545 -2.8122 -2.4683 22 6 10.3511 -3.6246 -2.4672 23 6 10.6969 -4.0351 -3.8999 24 6 9.5624 -4.8859 -4.4746 25 6 8.2659 -4.0735 -4.4756 26 6 2.2541 -1.0931 0.0005 27 8 1.8804 -2.2524 0.0053 28 1 -0.3635 0.0002 1.0276 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9250 2.1372 0.0004 32 1 5.5412 -0.9927 0.5160 33 1 4.5148 -2.4470 0.5180 34 1 6.7389 -2.9301 -0.9248 35 1 5.8379 -3.4209 -3.5392 36 1 6.7825 -1.9127 -3.5752 37 1 8.2834 -4.9875 -1.4237 38 1 7.4848 -8.0499 -0.3571 39 1 9.1851 -1.9197 -3.0801 40 1 8.8084 -2.5202 -1.4473 41 1 10.2202 -4.5169 -1.8551 42 1 11.1592 -3.0187 -2.0574 43 1 11.6203 -4.6142 -3.8991 44 1 10.8277 -3.1428 -4.5120 45 1 9.4315 -5.7783 -3.8624 46 1 9.8089 -5.1787 -5.4952 47 1 7.4576 -4.6797 -4.8846 48 1 8.3968 -3.1812 -5.0877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115608580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:54 Heat of formation + Delta-G solvation = 18.048856 kcal Electronic energy + Delta-G solvation = -30438.758874 eV Core-core repulsion = 26338.069069 eV Total energy + Delta-G solvation = -4100.689804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.41289 -39.53099 -38.39260 -37.19533 -35.28875 -34.40434 -33.26171 -31.96512 -31.09955 -30.22676 -28.84306 -28.22193 -27.01509 -24.98744 -23.76543 -22.77815 -22.10744 -21.42424 -20.49783 -19.99417 -18.36635 -17.73063 -17.37466 -17.06805 -16.25562 -16.15201 -15.80674 -15.32295 -15.09589 -14.73850 -14.48990 -14.27156 -13.98569 -13.80815 -13.56927 -13.45338 -13.09324 -12.96140 -12.74696 -12.48874 -12.47870 -11.95812 -11.89043 -11.78479 -11.66760 -11.52885 -11.10367 -10.82226 -10.75453 -10.53440 -10.48728 -10.24852 -10.17171 -10.02659 -9.79870 -9.62122 -9.46458 -9.29976 -8.85997 -8.52765 -8.46037 -6.99550 -5.78625 -3.07570 1.65338 1.90897 2.70905 2.95115 3.04671 3.46135 3.50464 3.53561 3.71676 4.34466 4.59611 4.59755 4.86133 4.98987 5.07892 5.20373 5.21461 5.27235 5.27841 5.30079 5.37223 5.58841 5.61760 5.73917 5.75747 5.83965 5.99185 6.04433 6.06055 6.13075 6.17572 6.20518 6.30877 6.45135 6.46227 6.51502 6.60795 6.79926 6.81541 6.83307 6.98991 7.07398 7.22028 7.57169 7.73740 7.96784 8.08269 8.39648 8.62398 9.52484 10.04294 10.40959 11.43126 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.003489 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.968630 B = 8024.052408 C = 9676.688300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.563 5.563 3 C 0.250 3.750 4 N -0.273 5.273 5 N -0.433 5.433 6 C 0.142 3.858 7 C 0.494 3.506 8 O -0.544 6.544 9 N -0.695 5.695 10 C 0.117 3.883 11 C 0.191 3.809 12 N -0.710 5.710 13 C -0.231 4.231 14 H 0.068 0.932 15 C -0.006 4.006 16 N -0.931 5.931 17 Si 0.898 3.102 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.109 4.109 25 C -0.115 4.115 26 C 0.650 3.350 27 O -0.547 6.547 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.404 0.596 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 18.010 2.494 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.293 5.293 3 C -0.050 4.050 4 N -0.094 5.094 5 N -0.253 5.253 6 C 0.016 3.984 7 C 0.277 3.723 8 O -0.422 6.422 9 N -0.346 5.346 10 C -0.009 4.009 11 C 0.099 3.901 12 N -0.352 5.352 13 C -0.362 4.362 14 H 0.086 0.914 15 C -0.202 4.202 16 N -0.579 5.579 17 Si 0.730 3.270 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.155 4.155 26 C 0.350 3.650 27 O -0.419 6.419 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.246 0.754 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.240 0.760 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.093 17.589 1.773 18.146 hybrid contribution -1.146 -1.224 0.220 1.691 sum -5.239 16.365 1.992 17.298 Atomic orbital electron populations 1.21787 0.74356 1.04712 1.03291 1.45846 1.08756 1.06689 1.67985 1.25840 0.85866 0.94649 0.98603 1.76917 1.18253 0.91861 1.22350 1.48198 1.05553 1.02887 1.68700 1.21271 0.85409 0.95258 0.96417 1.20699 0.81158 0.79365 0.91069 1.90679 1.53296 1.52507 1.45742 1.45665 1.28504 1.50249 1.10187 1.21882 0.98990 0.98358 0.81676 1.19811 0.90444 0.87837 0.91981 1.42440 1.45437 1.18872 1.28415 1.19018 1.09896 0.95093 1.12236 0.91437 1.24643 0.99237 0.97811 0.98511 1.69631 1.40203 1.25999 1.22100 0.86399 0.81518 0.81575 0.77532 1.21353 1.21818 1.21316 1.21688 0.95186 0.97780 1.00453 1.21475 0.96150 1.00421 0.97258 1.21468 0.98138 0.99046 0.96326 1.21374 0.93795 0.99914 0.99616 1.21789 0.98111 0.98660 0.96891 1.16678 0.81984 0.85067 0.81295 1.91121 1.77511 1.15202 1.58107 0.90980 0.89455 0.89452 0.75445 0.85983 0.85609 0.75998 0.91859 0.92903 0.78033 0.93570 0.92297 0.92418 0.90689 0.93290 0.93048 0.93267 0.89790 0.93810 0.91782 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.05 59.84 0.66 1.36 16 2 N -0.56 -6.44 3.14 -130.11 -0.41 -6.85 16 3 C 0.25 2.28 12.66 -89.13 -1.13 1.16 16 4 N -0.27 -3.56 12.53 29.87 0.37 -3.18 16 5 N -0.43 -6.77 3.11 -66.31 -0.21 -6.98 16 6 C 0.14 2.07 6.87 -5.19 -0.04 2.04 16 7 C 0.49 8.92 7.90 -10.98 -0.09 8.83 16 8 O -0.54 -11.91 16.43 5.56 0.09 -11.82 16 9 N -0.70 -12.02 5.09 -60.29 -0.31 -12.33 16 10 C 0.12 2.16 4.37 -4.04 -0.02 2.14 16 11 C 0.19 3.39 0.41 -131.82 -0.05 3.34 16 12 N -0.71 -15.33 3.40 -47.24 -0.16 -15.49 16 13 C -0.23 -5.88 8.70 -15.06 -0.13 -6.01 16 14 H 0.07 1.76 6.77 -52.48 -0.36 1.41 16 15 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 16 N -0.93 -26.35 13.07 55.49 0.73 -25.62 16 17 Si 0.90 22.40 29.55 -169.99 -5.02 17.38 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 C -0.11 -1.70 4.65 -26.73 -0.12 -1.82 16 22 C -0.12 -1.73 5.75 -26.73 -0.15 -1.88 16 23 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 24 C -0.11 -1.86 5.77 -26.73 -0.15 -2.02 16 25 C -0.11 -2.00 4.52 -26.73 -0.12 -2.12 16 26 C 0.65 10.88 8.60 -86.73 -0.75 10.13 16 27 O -0.55 -11.29 17.71 5.09 0.09 -11.20 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.23 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.13 1.79 8.11 -51.93 -0.42 1.37 16 34 H 0.40 6.54 7.39 -40.82 -0.30 6.24 16 35 H 0.06 1.35 7.50 -51.93 -0.39 0.96 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.38 8.85 6.63 -40.82 -0.27 8.58 16 38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.83 7.28 -51.93 -0.38 0.45 16 41 H 0.07 1.30 6.92 -51.93 -0.36 0.95 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.73 7.60 -51.92 -0.39 1.33 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 1.24 7.23 -51.93 -0.38 0.87 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -36.46 389.32 -8.75 -45.21 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.45 Total: 11.93 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -2.34 Total: 13.07 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: 0.02 Total: -70.44 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.18 Total: -23.02 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.46 -8.75 -45.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115608580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.260 kcal (2) G-P(sol) polarization free energy of solvation -36.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds