Wall clock time and date at job start Tue Mar 31 2020 21:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37355 * 125.83574 * 2 1 4 4 N 1.29398 * 108.82825 * 179.97438 * 3 2 1 5 5 N 1.40163 * 108.14481 * 359.97438 * 4 3 2 6 6 C 1.46505 * 126.35375 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46669 * 269.94739 * 6 5 4 8 8 O 1.21283 * 120.00454 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99666 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99777 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47161 * 176.62347 * 10 9 7 12 12 N 1.46496 * 109.47222 * 54.62419 * 11 10 9 13 13 C 1.36939 * 120.00331 * 62.83722 * 12 11 10 14 14 H 1.08005 * 119.99466 * 354.25996 * 13 12 11 15 15 C 1.38809 * 120.00281 * 174.25506 * 13 12 11 16 16 N 1.31625 * 120.00070 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47109 * 59.99637 * 17 15 13 19 19 H 1.48493 * 109.47419 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46783 * 300.00101 * 17 15 13 21 21 C 1.52995 * 109.47011 * 294.62376 * 11 10 9 22 22 C 1.53010 * 109.47372 * 179.97438 * 21 11 10 23 23 C 1.52998 * 109.46738 * 60.00162 * 22 21 11 24 24 C 1.53008 * 109.47155 * 300.00081 * 23 22 21 25 25 C 1.52997 * 109.47003 * 60.00110 * 24 23 22 26 26 C 1.34817 * 125.82863 * 179.97438 * 2 1 3 27 27 O 1.21811 * 126.30299 * 359.74698 * 26 2 1 28 28 H 1.08998 * 109.47911 * 270.01056 * 1 2 3 29 29 H 1.09009 * 109.47132 * 30.00878 * 1 2 3 30 30 H 1.09004 * 109.47569 * 149.99915 * 1 2 3 31 31 H 1.08001 * 125.58322 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46805 * 29.93988 * 6 5 4 33 33 H 1.08993 * 109.47018 * 149.94766 * 6 5 4 34 34 H 0.96992 * 120.00327 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46901 * 296.61968 * 10 9 7 36 36 H 1.09004 * 109.47804 * 56.62060 * 10 9 7 37 37 H 0.97001 * 120.00489 * 242.84311 * 12 11 10 38 38 H 0.96994 * 119.99550 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.47420 * 299.99773 * 21 11 10 40 40 H 1.09006 * 109.47267 * 60.00509 * 21 11 10 41 41 H 1.08997 * 109.46820 * 300.00333 * 22 21 11 42 42 H 1.08995 * 109.47427 * 180.02562 * 22 21 11 43 43 H 1.08996 * 109.47097 * 180.02562 * 23 22 21 44 44 H 1.08991 * 109.47326 * 60.00059 * 23 22 21 45 45 H 1.09008 * 109.46844 * 300.00279 * 24 23 22 46 46 H 1.09000 * 109.47188 * 180.02562 * 24 23 22 47 47 H 1.09004 * 109.47133 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.46843 * 59.99989 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5065 0.7351 0.0005 5 7 3.5343 -0.6663 0.0015 6 6 4.7312 -1.5112 0.0029 7 6 5.1418 -1.8028 -1.4175 8 8 4.4977 -1.3500 -2.3401 9 7 6.2241 -2.5677 -1.6625 10 6 6.6235 -2.8508 -3.0433 11 6 7.9201 -3.6629 -3.0428 12 7 7.7446 -4.8626 -2.2205 13 6 6.8198 -5.8077 -2.5767 14 1 6.1562 -5.6268 -3.4093 15 6 6.7355 -6.9980 -1.8677 16 7 7.5440 -7.2182 -0.8527 17 14 5.4744 -8.2875 -2.3540 18 1 5.7227 -8.7198 -3.7529 19 1 5.5873 -9.4573 -1.4463 20 1 4.1103 -7.7100 -2.2492 21 6 9.0545 -2.8122 -2.4683 22 6 10.3511 -3.6246 -2.4672 23 6 10.6969 -4.0351 -3.8999 24 6 9.5624 -4.8859 -4.4746 25 6 8.2659 -4.0735 -4.4756 26 6 2.2541 -1.0931 0.0005 27 8 1.8804 -2.2524 0.0053 28 1 -0.3635 0.0002 1.0276 29 1 -0.3634 0.8900 -0.5140 30 1 -0.3634 -0.8900 -0.5138 31 1 1.9250 2.1372 0.0004 32 1 5.5412 -0.9927 0.5160 33 1 4.5148 -2.4470 0.5180 34 1 6.7389 -2.9301 -0.9248 35 1 5.8379 -3.4209 -3.5392 36 1 6.7825 -1.9127 -3.5752 37 1 8.2834 -4.9875 -1.4237 38 1 7.4848 -8.0499 -0.3571 39 1 9.1851 -1.9197 -3.0801 40 1 8.8084 -2.5202 -1.4473 41 1 10.2202 -4.5169 -1.8551 42 1 11.1592 -3.0187 -2.0574 43 1 11.6203 -4.6142 -3.8991 44 1 10.8277 -3.1428 -4.5120 45 1 9.4315 -5.7783 -3.8624 46 1 9.8089 -5.1787 -5.4952 47 1 7.4576 -4.6797 -4.8846 48 1 8.3968 -3.1812 -5.0877 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115608580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:53 Heat of formation + Delta-G solvation = -7.035853 kcal Electronic energy + Delta-G solvation = -30439.846628 eV Core-core repulsion = 26338.069069 eV Total energy + Delta-G solvation = -4101.777559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.41751 -40.99427 -39.83080 -38.45153 -36.28809 -35.86474 -35.09064 -33.16259 -32.60017 -31.55124 -30.44980 -29.40476 -27.90052 -26.30466 -25.70848 -23.78333 -23.40328 -22.50934 -21.80674 -21.41939 -19.83972 -19.12362 -18.72605 -18.55034 -17.39680 -17.21837 -17.08274 -16.73252 -16.44364 -16.16940 -15.93034 -15.62284 -15.46102 -15.19434 -14.95909 -14.67598 -14.34355 -14.29446 -13.82507 -13.58960 -13.48591 -13.41323 -13.25903 -13.16867 -12.92593 -12.90814 -12.82112 -12.61258 -12.53287 -12.09864 -11.88130 -11.68483 -11.58833 -11.45092 -11.31399 -11.08277 -10.86053 -10.70857 -10.65404 -9.98250 -9.66718 -8.91923 -7.89830 -5.13511 0.65016 1.09745 1.41786 1.44861 1.48305 1.52463 1.55852 2.16094 2.41569 2.56994 3.43009 3.46141 3.72960 3.81124 3.92509 4.02206 4.06226 4.10621 4.12981 4.14506 4.39409 4.40959 4.48511 4.51326 4.67057 4.72866 4.76759 4.76969 4.81979 4.86661 4.91288 4.96062 4.98499 5.06726 5.18545 5.22939 5.43056 5.49744 5.52059 5.55653 5.60421 5.66812 5.69892 5.81748 6.33849 6.55509 6.60358 6.91658 7.19793 7.43145 8.15586 8.42262 9.32064 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011708 B = 0.003489 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.968630 B = 8024.052408 C = 9676.688300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.558 5.558 3 C 0.278 3.722 4 N -0.308 5.308 5 N -0.444 5.444 6 C 0.144 3.856 7 C 0.491 3.509 8 O -0.586 6.586 9 N -0.690 5.690 10 C 0.124 3.876 11 C 0.191 3.809 12 N -0.708 5.708 13 C -0.209 4.209 14 H 0.057 0.943 15 C -0.058 4.058 16 N -0.956 5.956 17 Si 0.941 3.059 18 H -0.283 1.283 19 H -0.295 1.295 20 H -0.298 1.298 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.107 4.107 24 C -0.106 4.106 25 C -0.114 4.114 26 C 0.626 3.374 27 O -0.605 6.605 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.294 0.706 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.411 0.589 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.379 0.621 38 H 0.247 0.753 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.040 0.960 46 H 0.056 0.944 47 H 0.035 0.965 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 21.690 2.491 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.286 5.286 3 C -0.019 4.019 4 N -0.129 5.129 5 N -0.262 5.262 6 C 0.018 3.982 7 C 0.276 3.724 8 O -0.467 6.467 9 N -0.340 5.340 10 C -0.002 4.002 11 C 0.100 3.900 12 N -0.349 5.349 13 C -0.341 4.341 14 H 0.075 0.925 15 C -0.251 4.251 16 N -0.607 5.607 17 Si 0.773 3.227 18 H -0.210 1.210 19 H -0.221 1.221 20 H -0.225 1.225 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.154 4.154 26 C 0.325 3.675 27 O -0.482 6.482 28 H 0.110 0.890 29 H 0.152 0.848 30 H 0.082 0.918 31 H 0.309 0.691 32 H 0.179 0.821 33 H 0.141 0.859 34 H 0.248 0.752 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.213 0.787 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.053 0.947 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.598 21.333 1.757 21.705 hybrid contribution -1.386 -2.209 0.145 2.612 sum -4.984 19.123 1.902 19.854 Atomic orbital electron populations 1.22174 0.71787 1.05828 1.05003 1.46105 1.10204 1.05856 1.66424 1.27180 0.84342 0.96092 0.94300 1.76943 1.20515 0.89909 1.25509 1.48331 1.05207 1.04293 1.68365 1.21334 0.86696 0.96072 0.94067 1.21329 0.80428 0.78422 0.92189 1.90644 1.54476 1.54194 1.47371 1.45643 1.28562 1.49896 1.09942 1.21743 0.97835 0.98412 0.82233 1.20019 0.91415 0.86630 0.91933 1.42453 1.44351 1.19392 1.28701 1.19105 1.09206 0.95291 1.10537 0.92524 1.25082 1.01061 0.99471 0.99486 1.69720 1.41720 1.25994 1.23246 0.85711 0.79572 0.80149 0.77274 1.20996 1.22120 1.22529 1.21666 0.93724 0.97830 1.01243 1.21441 0.96934 0.99534 0.97093 1.21448 0.97151 0.99595 0.96277 1.21303 0.94691 0.98651 0.99734 1.21781 0.97465 0.99434 0.96727 1.17159 0.83060 0.85558 0.81708 1.91052 1.78586 1.17754 1.60801 0.89034 0.84795 0.91837 0.69081 0.82079 0.85921 0.75248 0.95684 0.91490 0.78681 0.94378 0.89822 0.91543 0.93766 0.90477 0.92225 0.90749 0.94080 0.92576 0.94659 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 11.05 127.77 1.41 2.48 16 2 N -0.56 -11.74 3.14 -683.69 -2.15 -13.89 16 3 C 0.28 4.11 12.66 179.83 2.28 6.38 16 4 N -0.31 -7.37 12.53 -59.42 -0.74 -8.11 16 5 N -0.44 -13.69 3.11 -481.77 -1.50 -15.19 16 6 C 0.14 4.18 6.87 85.63 0.59 4.77 16 7 C 0.49 17.89 7.90 87.66 0.69 18.58 16 8 O -0.59 -26.09 16.43 -3.04 -0.05 -26.14 16 9 N -0.69 -23.85 5.09 -463.05 -2.36 -26.21 16 10 C 0.12 4.58 4.37 86.38 0.38 4.95 16 11 C 0.19 6.66 0.41 3.60 0.00 6.66 16 12 N -0.71 -31.15 3.40 -303.36 -1.03 -32.18 16 13 C -0.21 -10.96 8.70 84.03 0.73 -10.23 16 14 H 0.06 3.08 6.77 -2.91 -0.02 3.06 16 15 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 16 N -0.96 -55.62 13.07 21.65 0.28 -55.33 16 17 Si 0.94 47.57 29.55 68.60 2.03 49.59 16 18 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 20 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 21 C -0.11 -2.93 4.65 30.60 0.14 -2.79 16 22 C -0.11 -3.08 5.75 30.60 0.18 -2.91 16 23 C -0.11 -2.86 5.92 30.60 0.18 -2.68 16 24 C -0.11 -3.52 5.77 30.60 0.18 -3.35 16 25 C -0.11 -3.92 4.52 30.59 0.14 -3.78 16 26 C 0.63 21.18 8.60 178.99 1.54 22.72 16 27 O -0.60 -26.24 17.71 -4.70 -0.08 -26.32 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.13 0.30 8.14 -2.38 -0.02 0.29 16 30 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 31 H 0.29 -0.09 8.06 -2.91 -0.02 -0.12 16 32 H 0.16 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.12 3.62 8.11 -2.39 -0.02 3.60 16 34 H 0.41 13.18 7.39 -92.71 -0.69 12.49 16 35 H 0.02 1.11 7.50 -2.39 -0.02 1.09 16 36 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.38 17.76 6.63 -92.71 -0.61 17.14 16 38 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.73 7.28 -2.38 -0.02 1.71 16 41 H 0.04 1.50 6.92 -2.39 -0.02 1.48 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.71 7.60 -2.38 -0.02 1.70 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 47 H 0.03 1.39 7.23 -2.39 -0.02 1.37 16 48 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -85.79 389.32 2.98 -82.81 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: -0.31 Total: 32.93 kcal Atomic # 6 Polarization: 29.14 SS G_CDS: 8.90 Total: 38.04 kcal Atomic # 7 Polarization: -143.42 SS G_CDS: -7.50 Total: -150.91 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -0.13 Total: -52.46 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.59 kcal Total: -85.79 2.98 -82.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115608580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.775 kcal (2) G-P(sol) polarization free energy of solvation -85.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds