Wall clock time and date at job start Tue Mar 31 2020 21:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00320 * 2 1 4 4 C 1.34782 * 119.99836 * 180.02562 * 2 1 3 5 5 O 1.21281 * 119.99893 * 0.02562 * 4 2 1 6 6 C 1.50697 * 120.00040 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.47311 * 179.97438 * 6 4 2 8 8 C 1.35815 * 126.05337 * 124.97395 * 7 6 4 9 9 C 1.35751 * 107.55952 * 180.02562 * 8 7 6 10 10 N 1.40770 * 126.07492 * 180.26537 * 9 8 7 11 11 C 1.34782 * 119.99708 * 179.71700 * 10 9 8 12 12 O 1.21300 * 120.00112 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99579 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.47378 * 319.99385 * 13 11 10 15 15 N 1.46907 * 109.46841 * 200.00266 * 13 11 10 16 16 C 1.52999 * 109.47311 * 80.00394 * 13 11 10 17 17 C 1.52998 * 109.46901 * 185.00080 * 16 13 11 18 18 C 1.52999 * 109.46901 * 180.02562 * 17 16 13 19 19 C 1.50698 * 109.47371 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99890 * 359.97438 * 19 18 17 21 21 C 1.37882 * 120.00287 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99624 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00031 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47247 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46952 * 120.00202 * 23 21 19 26 26 H 1.48497 * 109.47552 * 240.00349 * 23 21 19 27 27 C 1.40255 * 107.84376 * 0.02562 * 9 8 7 28 28 N 1.30831 * 108.33384 * 359.97438 * 27 9 8 29 29 H 1.09002 * 109.47278 * 270.00358 * 1 2 3 30 30 H 1.09005 * 109.46977 * 29.99877 * 1 2 3 31 31 H 1.08997 * 109.47522 * 149.99967 * 1 2 3 32 32 H 1.09007 * 109.47050 * 240.00348 * 3 2 1 33 33 H 1.08998 * 109.47011 * 359.97438 * 3 2 1 34 34 H 1.08992 * 109.47528 * 120.00068 * 3 2 1 35 35 H 1.09006 * 109.46931 * 60.00117 * 6 4 2 36 36 H 1.09001 * 109.47489 * 300.00743 * 6 4 2 37 37 H 1.07997 * 126.21692 * 0.02562 * 8 7 6 38 38 H 0.96996 * 120.00414 * 359.71294 * 10 9 8 39 39 H 1.00905 * 110.99628 * 299.99775 * 15 13 11 40 40 H 1.00892 * 110.99920 * 63.95050 * 15 13 11 41 41 H 1.09003 * 109.46690 * 304.99415 * 16 13 11 42 42 H 1.08990 * 109.47342 * 64.99326 * 16 13 11 43 43 H 1.09003 * 109.46905 * 299.99203 * 17 16 13 44 44 H 1.08997 * 109.47952 * 59.99759 * 17 16 13 45 45 H 1.09007 * 109.47141 * 299.99543 * 18 17 16 46 46 H 1.08995 * 109.47749 * 59.99118 * 18 17 16 47 47 H 0.97007 * 119.99702 * 179.97438 * 22 21 19 48 48 H 1.08000 * 125.83288 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 -0.0005 5 8 1.5324 -2.2176 -0.0015 6 6 3.6458 -1.1673 -0.0011 7 7 4.1342 -2.5485 -0.0010 8 6 4.9937 -3.0925 -0.9009 9 6 5.1898 -4.3887 -0.5482 10 7 6.0168 -5.3129 -1.2141 11 6 6.1261 -6.5743 -0.7520 12 8 5.5116 -6.9132 0.2373 13 6 7.0119 -7.5636 -1.4646 14 1 6.9096 -7.4328 -2.5418 15 7 6.6148 -8.9295 -1.0974 16 6 8.4682 -7.3292 -1.0582 17 6 9.3795 -8.2486 -1.8738 18 6 10.8357 -8.0147 -1.4670 19 6 11.7333 -8.9207 -2.2698 20 1 11.3077 -9.5962 -2.9971 21 6 13.0980 -8.8874 -2.0758 22 7 13.6163 -8.0653 -1.1898 23 14 14.2105 -10.0110 -3.0704 24 1 13.3867 -10.8336 -3.9923 25 1 15.1652 -9.1909 -3.8586 26 1 14.9642 -10.9013 -2.1515 27 6 4.4262 -4.6416 0.6008 28 7 3.7965 -3.5421 0.9268 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.8242 1.3264 -0.8901 33 1 1.4893 2.0972 -0.0005 34 1 2.8242 1.3264 0.8899 35 1 4.0095 -0.6537 0.8889 36 1 4.0089 -0.6532 -0.8910 37 1 5.4399 -2.5860 -1.7439 38 1 6.5079 -5.0421 -2.0055 39 1 6.7009 -9.0760 -0.1028 40 1 5.6779 -9.1307 -1.4128 41 1 8.7359 -6.2900 -1.2492 42 1 8.5888 -7.5463 0.0030 43 1 9.1118 -9.2879 -1.6828 44 1 9.2590 -8.0315 -2.9351 45 1 11.1038 -6.9755 -1.6575 46 1 10.9560 -8.2321 -0.4057 47 1 14.5764 -8.0421 -1.0530 48 1 4.3681 -5.5832 1.1266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118322785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:36 Heat of formation + Delta-G solvation = 10.926238 kcal Electronic energy + Delta-G solvation = -28032.274481 eV Core-core repulsion = 23931.275816 eV Total energy + Delta-G solvation = -4100.998664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58830 -40.27589 -39.61720 -36.11747 -35.81177 -34.95505 -33.38433 -33.20001 -31.33717 -30.02722 -29.07115 -28.03426 -27.50647 -25.91881 -24.93212 -22.76320 -22.00890 -21.06201 -20.33964 -19.99357 -19.49181 -17.78246 -17.70707 -17.09479 -16.79681 -16.40547 -16.25599 -15.88557 -15.64103 -15.18446 -14.76433 -14.44502 -14.34470 -14.19219 -13.98491 -13.83269 -13.58887 -13.38890 -13.28437 -13.05286 -12.91979 -12.68104 -12.56331 -12.39002 -11.73875 -11.51484 -11.13983 -11.00269 -10.84848 -10.74511 -10.56242 -10.44078 -10.40718 -10.13889 -9.59136 -9.50116 -9.30814 -9.21117 -9.01680 -8.58494 -8.28528 -7.86379 -5.94119 -3.95518 1.50834 1.94905 2.03993 2.34526 2.51899 3.05954 3.12718 3.34948 3.42439 3.47192 3.78433 4.12791 4.37895 4.47787 4.49351 4.51594 4.59622 4.65677 4.73478 4.80879 4.95005 5.00351 5.03415 5.17648 5.28586 5.38440 5.41478 5.41955 5.50512 5.78737 5.93591 6.05274 6.13934 6.45623 6.53732 6.71600 6.80081 6.84026 7.02806 7.10311 7.26255 7.33941 7.52770 7.56177 7.60923 7.76861 7.92117 8.07750 8.10255 8.51170 9.12501 9.68271 11.17318 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.001657 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.508115 B =16895.533695 C =17660.024753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.625 5.625 3 C 0.073 3.927 4 C 0.497 3.503 5 O -0.503 6.503 6 C 0.129 3.871 7 N -0.369 5.369 8 C 0.011 3.989 9 C 0.012 3.988 10 N -0.643 5.643 11 C 0.484 3.516 12 O -0.537 6.537 13 C 0.083 3.917 14 H 0.103 0.897 15 N -0.810 5.810 16 C -0.104 4.104 17 C -0.100 4.100 18 C 0.018 3.982 19 C -0.516 4.516 20 H 0.056 0.944 21 C 0.054 3.946 22 N -0.897 5.897 23 Si 0.890 3.110 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.051 3.949 28 N -0.259 5.259 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.124 0.876 37 H 0.177 0.823 38 H 0.412 0.588 39 H 0.351 0.649 40 H 0.339 0.661 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.012 0.988 46 H 0.014 0.986 47 H 0.258 0.742 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.914 22.385 -0.242 33.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.361 5.361 3 C -0.070 4.070 4 C 0.282 3.718 5 O -0.375 6.375 6 C 0.003 3.997 7 N -0.155 5.155 8 C -0.135 4.135 9 C -0.092 4.092 10 N -0.288 5.288 11 C 0.271 3.729 12 O -0.413 6.413 13 C -0.034 4.034 14 H 0.120 0.880 15 N -0.339 5.339 16 C -0.143 4.143 17 C -0.138 4.138 18 C -0.019 4.019 19 C -0.554 4.554 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.537 5.537 23 Si 0.718 3.282 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.211 1.211 27 C -0.138 4.138 28 N -0.079 5.079 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.194 0.806 38 H 0.248 0.752 39 H 0.166 0.834 40 H 0.151 0.849 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.068 0.932 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -25.729 21.981 0.874 33.852 hybrid contribution 0.780 0.072 -0.961 1.239 sum -24.950 22.053 -0.087 33.299 Atomic orbital electron populations 1.21687 0.78556 1.03256 1.02120 1.47733 1.07404 1.06088 1.74924 1.21902 0.97672 0.85362 1.02030 1.20678 0.89954 0.83821 0.77312 1.90819 1.69359 1.30597 1.46773 1.21370 0.92333 0.79993 1.06013 1.47642 1.36456 1.09058 1.22300 1.21817 0.99627 0.93667 0.98371 1.17820 1.02572 0.89993 0.98850 1.43099 1.45350 1.10007 1.30359 1.22730 0.82354 0.82649 0.85209 1.90557 1.46529 1.78094 1.26140 1.21756 0.95418 0.86234 0.99945 0.87956 1.59050 1.31197 1.21144 1.22467 1.21674 0.90073 1.00888 1.01622 1.21539 0.96227 0.98606 0.97387 1.19133 0.89309 0.96728 0.96715 1.21326 0.91470 1.21334 1.21262 0.92584 1.25033 0.98365 0.95741 0.95468 1.69982 1.11737 1.37604 1.34386 0.86564 0.80726 0.80757 0.80119 1.19707 1.21159 1.21093 1.24541 0.95007 0.98364 0.95842 1.77493 1.21233 0.96244 1.12934 0.92543 0.91004 0.90468 0.91732 0.89885 0.91637 0.86871 0.85823 0.80558 0.75246 0.83428 0.84866 0.91856 0.91772 0.91777 0.93638 0.96955 0.96739 0.93198 0.77853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 10.41 59.85 0.62 1.06 16 2 N -0.62 -3.52 3.27 -189.52 -0.62 -4.14 16 3 C 0.07 0.10 9.74 59.85 0.58 0.68 16 4 C 0.50 4.50 7.70 -10.98 -0.08 4.41 16 5 O -0.50 -7.22 15.29 5.56 0.08 -7.14 16 6 C 0.13 0.83 5.81 -5.20 -0.03 0.80 16 7 N -0.37 -4.06 3.42 -62.21 -0.21 -4.27 16 8 C 0.01 0.11 11.52 -16.68 -0.19 -0.09 16 9 C 0.01 0.16 6.90 -83.88 -0.58 -0.42 16 10 N -0.64 -7.28 5.47 -10.04 -0.05 -7.33 16 11 C 0.48 6.53 7.04 -10.98 -0.08 6.46 16 12 O -0.54 -8.64 13.41 5.54 0.07 -8.57 16 13 C 0.08 1.08 3.15 -68.86 -0.22 0.87 16 14 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 15 N -0.81 -10.85 8.44 -5.65 -0.05 -10.90 16 16 C -0.10 -1.67 4.84 -26.73 -0.13 -1.80 16 17 C -0.10 -2.00 5.04 -26.73 -0.13 -2.13 16 18 C 0.02 0.47 4.97 -27.88 -0.14 0.33 16 19 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 23 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.05 0.76 10.84 -17.22 -0.19 0.57 16 28 N -0.26 -3.84 11.63 30.70 0.36 -3.48 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.17 7.92 -51.93 -0.41 -0.24 16 31 H 0.08 0.55 7.42 -51.93 -0.39 0.16 16 32 H 0.06 0.00 7.85 -51.93 -0.41 -0.41 16 33 H 0.08 0.00 7.79 -51.93 -0.40 -0.40 16 34 H 0.07 0.04 7.85 -51.93 -0.41 -0.37 16 35 H 0.11 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.12 0.30 7.80 -51.93 -0.40 -0.11 16 37 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.41 3.40 8.83 -40.82 -0.36 3.04 16 39 H 0.35 4.89 8.58 -39.29 -0.34 4.55 16 40 H 0.34 3.97 9.06 -39.30 -0.36 3.61 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.21 3.23 5.92 -52.49 -0.31 2.92 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -39.57 403.36 -7.12 -46.69 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.52 Total: 5.51 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.97 Total: -2.79 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.16 Total: -56.58 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.16 Total: -15.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -39.57 -7.12 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118322785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.612 kcal (2) G-P(sol) polarization free energy of solvation -39.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds